PDB Chemical Component ODJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ODJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C25	O3	1.428	1.429
N6	C20	1.367	1.307
N6	N5	1.352	1.401
C24	N5	1.344	1.363
C24	C23	1.381	1.356
C20	C18	1.406	1.405
N5	C19	1.424	1.365
O3	C23	1.372	1.361
C23	C22	1.387	1.406
C18	C19	1.386	1.410
C18	C17	1.471	1.465
C19	C21	1.404	1.400
C22	C21	1.386	1.364
C17	N1	1.342	1.347
C17	O2	1.229	1.217
N1	C1	1.413	1.401
C2	C1	1.398	1.389
C2	C3	1.385	1.381
C1	C6	1.411	1.389
C3	C4	1.392	1.389
C6	C16	1.512	1.507
C6	C5	1.390	1.381
C4	C5	1.395	1.389
C4	N2	1.413	1.400
N2	C7	1.365	1.348
C13	C14	1.389	1.366
C13	C12	1.389	1.389
C14	C10	1.394	1.392
C7	O1	1.235	1.216
C7	C8	1.509	1.474
C12	C11	1.388	1.366
C10	C8	1.449	1.469
C10	C9	1.401	1.409
C8	N3	1.333	1.316
C11	C9	1.392	1.391
C9	N4	1.363	1.370
N3	N4	1.376	1.284
N4	C15	1.458	1.465
C13	H1	1.080	1.081
C16	H2	1.100	1.090
C16	H3	1.100	1.089
C16	H4	1.100	1.090
C15	H5	1.099	1.090
C15	H6	1.100	1.090
C15	H7	1.100	1.090
C20	H8	1.080	1.080
C21	H9	1.080	1.080
C22	H10	1.080	1.080
C24	H11	1.080	1.080
C11	H12	1.080	1.079
C12	H13	1.080	1.080
N1	H14	1.000	0.970
C2	H15	1.080	1.080
C3	H16	1.080	1.080
C5	H17	1.080	1.079
N2	H18	1.000	0.970
C14	H19	1.080	1.079
C25	H21	1.100	1.090
C25	H22	1.100	1.090
C25	H23	1.100	1.090

Bond Angles for ODJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N6	C20	H8	123.3	125.6
N5	C24	H11	120.2	119.6
C23	C22	H10	120.2	120.3
C17	C18	C19	124.1	126.6
C18	C19	C21	137.2	132.7
C18	C17	N1	115.6	120.0
C18	C17	O2	120.9	120.0
C19	C21	H9	119.9	120.4
C22	C21	H9	119.9	120.3
N1	C17	O2	123.5	120.0
C17	N1	C1	124.1	120.0
C17	N1	H14	117.9	120.0
N1	C1	C6	118.6	120.0
C1	N1	H14	117.9	120.0
C2	C1	C6	120.8	120.1
C2	C3	C4	120.2	120.0
C3	C2	H15	120.1	120.0
C2	C3	H16	119.9	120.0
C1	C6	C5	118.1	120.0
C3	C4	C5	119.7	120.0
C3	C4	N2	120.7	120.0
C4	C3	H16	119.9	120.0
C6	C16	H2	109.5	109.4
C6	C16	H3	109.5	109.5
C6	C16	H4	109.5	109.4
C6	C5	H17	119.3	120.0
C5	C4	N2	119.5	120.0
C4	C5	H17	119.3	120.0
C4	N2	C7	128.2	120.0
C4	N2	H18	115.9	120.0
N2	C7	O1	124.5	120.0
N2	C7	C8	114.9	120.0
C7	N2	H18	115.9	120.0
C12	C13	C14	120.7	120.6
C13	C14	C10	119.6	119.5
C14	C13	H1	119.6	119.7
C13	C14	H19	120.2	120.3
C13	C12	C11	120.7	120.9
C12	C13	H1	119.6	119.7
C13	C12	H13	119.6	119.5
O1	C7	C8	120.5	120.0
C7	C8	N3	122.1	126.8
C12	C11	C9	118.2	119.8
C12	C11	H12	120.9	120.1
C8	N3	N4	106.8	111.9
C11	C9	N4	131.8	134.7
C9	C11	H12	120.9	120.1
N4	C15	H5	109.5	109.4
N4	C15	H6	109.4	109.5
N4	C15	H7	109.5	109.5
H2	C16	H3	109.5	109.5
H2	C16	H4	109.4	109.5
H3	C16	H4	109.5	109.5
H5	C15	H6	109.5	109.5
H5	C15	H7	109.4	109.4
H6	C15	H7	109.5	109.4
H21	C25	H22	109.5	109.5
H21	C25	H23	109.4	109.4
H22	C25	H23	109.5	109.5

Torsion Angles for ODJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N5	N6	C20	H8	179.8	179.8
N6	N5	C24	H11	356.3	0.5
C24	C23	C22	H10	181.6	180.0
C20	C18	C19	C21	176.1	180.2
C20	C18	C17	N1	12.1	359.8
C20	C18	C17	O2	192.7	179.8
N5	C19	C21	H9	180.8	180.0
O3	C23	C22	H10	3.9	360.0
C23	C22	C21	H9	178.0	180.0
C19	C18	C17	N1	189.7	180.0
C19	C18	C17	O2	10.4	0.0
C18	C19	C21	H9	4.6	360.0
C17	C18	C19	C21	357.9	360.0
N1	C17	C18	O2	179.4	180.0
C18	C17	N1	C1	175.9	174.5
C18	C17	N1	H14	355.9	354.4
C22	C21	C19	H9	180.0	180.0
C19	C21	C22	H9	180.0	180.0
N1	C17	C18	C19	189.7	180.0
C18	C17	N1	O2	180.6	180.0
C17	N1	C1	C6	271.6	154.9
C1	N1	C17	H14	180.0	180.1
O2	C17	C18	C19	10.4	0.0
C18	C17	O2	N1	179.3	180.0
O2	C17	N1	C1	355.3	354.5
O2	C17	N1	H14	175.3	174.4
C1	N1	C17	O2	355.3	354.5
C17	N1	C1	H14	180.0	179.9
C2	C1	N1	C6	176.2	180.2
N1	C1	C6	C5	174.0	179.8
N1	C1	C2	C6	183.9	179.8
C2	C1	N1	H14	267.8	155.2
C2	C1	C6	C5	357.8	359.5
C3	C2	C1	C6	1.7	0.2
C2	C3	C4	C5	356.5	360.0
C2	C3	C4	N2	172.7	180.0
C4	C3	C2	H16	180.0	180.1
C6	C1	N1	H14	91.5	335.0
C1	C6	C16	H2	90.9	90.0
C1	C6	C16	H3	211.0	210.0
C1	C6	C16	H4	331.0	330.1
C1	C6	C5	H17	179.8	180.3
C4	C3	C2	H15	181.1	180.0
C2	C3	C4	H16	180.0	179.9
C5	C4	C3	N2	183.8	180.0
C3	C4	C5	H17	183.0	180.0
C3	C4	N2	C7	233.5	35.1
C3	C4	N2	H18	53.5	215.1
H2	C16	C6	H3	240.0	240.0
H2	C16	C6	H4	119.9	119.9
H3	C16	C6	H4	240.0	239.9
C5	C6	C16	H2	269.1	270.2
C5	C6	C16	H3	29.1	30.2
C5	C6	C16	H4	149.1	150.3
C6	C5	C4	N2	186.8	179.8
C4	C5	C6	H17	180.0	180.2
C1	C6	C5	C4	359.9	0.5
C3	C4	C5	N2	176.2	180.0
C5	C4	C3	H16	176.5	180.1
C6	C5	C4	H17	180.0	179.8
C5	C4	N2	C7	49.7	215.0
C5	C4	N2	H18	229.7	35.0
C3	C4	N2	C5	183.8	180.0
N2	C4	C3	H16	352.7	0.1
N2	C4	C5	H17	6.8	0.0
C4	N2	C7	O1	3.6	355.2
C4	N2	C7	C8	184.1	175.2
C7	N2	C4	H18	180.0	180.0
C4	N2	C7	H18	180.0	180.0
O1	C7	N2	C8	179.5	180.0
N2	C7	C8	N3	196.5	0.0
C14	C13	C12	C11	0.6	0.1
C12	C13	C14	H1	180.0	179.7
C14	C13	C12	H13	180.6	179.9
C12	C13	C14	C10	359.1	359.9
C14	C13	C12	H1	180.0	180.3
C12	C13	C14	H19	179.2	179.9
C13	C12	C11	C9	0.7	359.9
C13	C12	C11	H12	180.8	180.0
C10	C14	C13	H1	179.1	180.2
C13	C14	C10	H19	180.0	180.0
N2	C7	O1	C8	180.6	180.0
O1	C7	N2	H18	183.6	175.2
O1	C7	C8	N3	17.0	180.0
N2	C7	C8	O1	179.5	180.0
C8	C7	N2	H18	4.1	355.2
C7	C8	N3	N4	171.8	180.0
C11	C12	C13	C14	0.6	0.1
C11	C12	C13	H1	180.6	179.8
C13	C12	C11	H13	180.0	179.9
C12	C11	C9	N4	176.7	180.0
C9	C11	C12	H12	180.0	180.0
C13	C14	C10	C8	181.3	180.0
C13	C14	C10	C9	359.8	0.1
C10	C9	C11	H12	178.2	180.0
C12	C11	C9	H12	180.0	180.0
N4	C9	C11	H12	356.7	360.0
C9	N4	C15	H5	184.1	270.0
C9	N4	C15	H6	304.1	30.0
C9	N4	C15	H7	64.1	150.0
C11	C9	N4	N3	179.6	180.0
N3	N4	C15	H5	360.0	90.0
N3	N4	C15	H6	120.0	210.0
N3	N4	C15	H7	240.0	330.1
H5	C15	N4	H6	240.0	240.0
H5	C15	N4	H7	120.0	120.0
H6	C15	N4	H7	240.0	240.0
C12	C13	H1	C14	180.0	180.3
H1	C13	C14	C10	179.1	180.2
H1	C13	C14	H19	359.2	0.2
H1	C13	C12	C11	180.6	179.8
H1	C13	C12	H13	0.6	359.7
C6	C16	H2	H3	120.0	120.0
C6	C16	H2	H4	240.0	240.1
H3	C16	H2	H4	120.0	120.1
C6	C16	H3	H2	240.0	240.1
C6	C16	H3	H4	120.0	120.0
H2	C16	H3	H4	240.0	240.0
C6	C16	H4	H2	120.0	119.9
C6	C16	H4	H3	240.0	239.9
H2	C16	H4	H3	120.0	120.0
N4	C15	H5	H6	120.0	120.0
N4	C15	H5	H7	240.0	240.0
H6	C15	H5	H7	120.0	120.0
N4	C15	H6	H5	240.0	240.0
N4	C15	H6	H7	120.0	120.0
H5	C15	H6	H7	240.0	240.0
N4	C15	H7	H5	120.0	120.0
N4	C15	H7	H6	240.0	240.0
H5	C15	H7	H6	120.0	120.0
H10	C22	C21	H9	358.0	0.0
C12	C11	H12	C9	180.0	180.0
H12	C11	C9	N4	356.7	360.0
H13	C12	C13	C14	180.6	179.9
C13	C12	H13	C11	180.0	180.1
H13	C12	C13	H1	0.6	359.7
H13	C12	C11	C9	180.8	180.0
H13	C12	C11	H12	0.8	0.1
H14	N1	C17	O2	175.3	174.4
C17	N1	H14	C1	180.0	180.1
H14	N1	C1	C6	91.5	335.0
H15	C2	C1	C6	181.8	180.2
H15	C2	C3	C4	181.1	180.0
H15	C2	C3	H16	1.1	359.9
C2	C3	H16	C4	180.0	180.1
H16	C3	C2	H15	1.1	359.9
H16	C3	C4	C5	176.5	180.1
H16	C3	C4	N2	352.7	0.1
H17	C5	C4	N2	6.8	0.0
C4	N2	H18	C7	180.0	180.0
H18	N2	C7	O1	183.6	175.2
H18	N2	C7	C8	4.1	355.2
C13	C14	H19	C10	180.0	180.0
H19	C14	C13	H1	359.2	0.2
H22	C25	H21	H23	120.0	120.0
H21	C25	H22	H23	240.0	240.0
H21	C25	H23	H22	120.0	120.0