PDB Chemical Component ODA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ODA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.436 1.470
N H 1.000 1.008
N H2 1.000 1.009
CA CB 1.530 1.601
CA C2 1.531 1.490
CA HA 1.100 1.090
CB CG 1.501 1.597
CB HB2 1.100 1.090
CB HB3 1.100 1.090
CG CD 1.535 1.489
CG HG2 1.100 1.089
CG HG3 1.100 1.090
CD OE1 1.247 1.214
CD NE2 1.349 1.289
NE2 N2 1.455 1.465
NE2 CD2 1.471 1.450
C2 O2 1.248 1.213
C2 N2 1.325 1.289
N2 CA2 1.458 1.452
CA2 CB2 1.540 1.532
CA2 C 1.523 1.507
CA2 HA2 1.100 1.089
CB2 CG2 1.515 1.531
CB2 HB23 1.100 1.090
CB2 HB22 1.100 1.091
CG2 CD2 1.517 1.533
CG2 HG23 1.100 1.089
CG2 HG22 1.100 1.090
CD2 HD22 1.100 1.090
CD2 HD23 1.100 1.089
C O 1.223 1.208
C OXT 1.328 1.343
OXT HXT 0.950 0.967

Bond Angles for ODA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 111.0
CA N H2 109.5 111.0
N CA CB 112.9 109.8
N CA C2 103.5 109.8
N CA HA 111.9 109.8
H N H2 109.5 111.0
CB CA C2 111.5 107.8
CB CA HA 104.0 109.8
CA CB CG 112.6 94.6
CA CB HB2 108.5 112.3
CA CB HB3 108.4 112.3
C2 CA HA 113.3 109.8
CA C2 O2 121.9 117.7
CA C2 N2 116.6 124.6
CG CB HB2 108.4 112.3
CG CB HB3 108.5 112.3
CB CG CD 113.5 108.1
CB CG HG2 108.2 109.8
CB CG HG3 108.2 109.7
HB2 CB HB3 110.4 111.9
CD CG HG2 108.2 109.7
CD CG HG3 108.1 109.7
CG CD OE1 118.6 118.3
CG CD NE2 118.2 123.4
HG2 CG HG3 110.7 109.8
OE1 CD NE2 123.1 118.3
CD NE2 N2 122.9 112.2
CD NE2 CD2 123.2 129.5
N2 NE2 CD2 113.8 118.3
NE2 N2 C2 123.1 112.9
NE2 N2 CA2 117.9 118.1
NE2 CD2 CG2 109.9 109.7
NE2 CD2 HD22 109.3 109.4
NE2 CD2 HD23 109.3 109.4
O2 C2 N2 121.5 117.7
C2 N2 CA2 119.0 129.0
N2 CA2 CB2 110.8 109.7
N2 CA2 C 113.4 109.4
N2 CA2 HA2 106.7 109.4
CB2 CA2 C 111.9 109.4
CB2 CA2 HA2 108.3 109.4
CA2 CB2 CG2 115.0 109.2
CA2 CB2 HB23 107.7 109.5
CA2 CB2 HB22 107.7 109.5
C CA2 HA2 105.3 109.4
CA2 C O 120.6 120.0
CA2 C OXT 116.7 120.0
CG2 CB2 HB23 107.7 109.5
CG2 CB2 HB22 107.7 109.5
CB2 CG2 CD2 110.0 109.1
CB2 CG2 HG23 109.3 109.6
CB2 CG2 HG22 109.3 109.6
HB23 CB2 HB22 111.2 109.5
CD2 CG2 HG23 109.3 109.5
CD2 CG2 HG22 109.3 109.5
CG2 CD2 HD22 109.3 109.4
CG2 CD2 HD23 109.3 109.4
HG23 CG2 HG22 109.7 109.5
HD22 CD2 HD23 109.6 109.4
O C OXT 122.1 120.0
C OXT HXT 109.5 117.0

Torsion Angles for ODA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 240.0 236.0
CB CA N C2 239.3 241.6
CB CA N HA 116.9 120.7
N CA CB CG 165.3 75.5
N CA CB HB2 285.3 191.9
N CA CB HB3 45.2 319.1
C2 CA N HA 237.6 239.2
N CA C2 O2 342.8 156.9
N CA C2 N2 162.3 336.8
CA N H H2 120.0 123.9
H N CA CB 180.0 54.9
H N CA C2 300.7 173.3
H N CA HA 63.1 294.2
CA N H2 H 240.0 236.1
H2 N CA CB 300.0 178.9
H2 N CA C2 60.7 297.3
H2 N CA HA 183.1 58.1
CB CA N H 180.0 54.9
CB CA N H2 300.0 178.9
N CA CB C2 116.1 119.6
N CA CB HA 238.5 239.3
C2 CA CB HA 122.4 119.6
CB CA C2 O2 104.5 276.5
CB CA C2 N2 284.0 96.4
CG CB CA HB2 240.0 243.7
CG CB CA HB3 120.0 116.4
CA CB CG CD 36.7 315.6
CA CB CG HG2 156.8 75.2
CA CB CG HG3 276.8 196.0
HB2 CB CA HB3 240.0 232.8
C2 CA N H 300.7 173.3
C2 CA N H2 60.7 297.3
N CA C2 CB 238.3 240.4
N CA C2 HA 121.4 120.8
CB CA C2 HA 243.1 240.4
C2 CA CB CG 49.2 315.9
C2 CA CB HB2 169.2 72.2
C2 CA CB HB3 289.1 199.5
NE2 N2 C2 CA 2.8 346.5
O2 C2 CA N2 180.5 180.0
CA C2 N2 CA2 182.3 167.3
HA CA N H 63.1 294.2
HA CA N H2 183.1 58.1
N CA HA CB 122.2 120.7
N CA HA C2 243.4 239.2
CB CA HA C2 121.2 118.4
HA CA CB CG 286.7 196.3
HA CA CB HB2 46.7 312.6
HA CA CB HB3 166.7 79.8
HA CA C2 O2 221.4 36.1
HA CA C2 N2 40.9 216.0
CG CB CA C2 49.2 315.9
CG CB CA HA 286.7 196.3
CA CB CG HB2 120.0 116.4
CA CB CG HB3 240.0 243.6
HB2 CB CG HB3 120.0 127.2
CD CG CB HG2 240.0 240.4
CD CG CB HG3 120.0 119.6
CB CG CD OE1 106.3 279.2
CB CG CD NE2 288.5 99.2
HG2 CG CB HG3 240.0 239.2
HB2 CB CA C2 169.2 72.2
HB2 CB CA HA 46.7 312.6
CA CB HB2 CG 237.5 254.8
CA CB HB2 HB3 118.7 127.4
CG CB HB2 HB3 241.3 232.6
HB2 CB CG CD 276.7 199.2
HB2 CB CG HG2 36.7 318.8
HB2 CB CG HG3 156.7 79.6
HB3 CB CA C2 289.1 199.5
HB3 CB CA HA 166.7 79.8
CA CB HB3 CG 122.5 105.2
CA CB HB3 HB2 241.3 232.6
CG CB HB3 HB2 118.7 127.4
HB3 CB CG CD 156.7 72.0
HB3 CB CG HG2 276.8 191.7
HB3 CB CG HG3 36.8 312.4
CD CG CB HB2 276.7 199.2
CD CG CB HB3 156.7 72.0
CB CG CD HG2 120.0 119.7
CB CG CD HG3 240.0 240.4
HG2 CG CD HG3 120.0 120.7
OE1 CD CG NE2 177.8 180.0
CG CD NE2 N2 5.0 343.8
CG CD NE2 CD2 181.0 164.5
HG2 CG CB HB2 36.7 318.8
HG2 CG CB HB3 276.8 191.7
CB CG HG2 CD 236.7 241.3
CB CG HG2 HG3 118.4 120.7
CD CG HG2 HG3 241.7 239.4
HG2 CG CD OE1 346.3 159.5
HG2 CG CD NE2 168.5 339.6
HG3 CG CB HB2 156.7 79.6
HG3 CG CB HB3 36.8 312.4
CB CG HG3 CD 123.3 118.6
CB CG HG3 HG2 241.6 239.3
CD CG HG3 HG2 118.4 120.6
HG3 CG CD OE1 226.3 38.8
HG3 CG CD NE2 48.5 218.9
OE1 CD CG HG2 346.3 159.5
OE1 CD CG HG3 226.3 38.8
CG CD OE1 NE2 182.4 180.0
OE1 CD NE2 N2 187.3 163.8
OE1 CD NE2 CD2 3.3 344.5
NE2 CD CG HG2 168.5 339.6
NE2 CD CG HG3 48.5 218.9
CG CD NE2 OE1 177.7 180.0
N2 NE2 CD CD2 184.0 179.3
CD NE2 N2 C2 46.2 321.9
CD NE2 N2 CA2 226.7 141.3
CD NE2 CD2 CG2 128.0 222.9
CD NE2 CD2 HD22 248.0 343.0
CD NE2 CD2 HD23 8.0 102.9
CA C2 N2 NE2 2.8 346.5
CD NE2 N2 CD2 176.4 180.6
N2 NE2 CD2 CG2 304.4 43.6
N2 NE2 CD2 HD22 64.3 163.7
N2 NE2 CD2 HD23 184.4 283.6
O2 C2 N2 NE2 182.3 166.5
C2 N2 NE2 CA2 179.5 180.7
NE2 N2 CA2 CB2 317.9 43.7
NE2 N2 CA2 C 84.8 163.7
NE2 N2 CA2 HA2 200.3 283.6
CD NE2 CD2 N2 183.7 179.3
CD2 NE2 N2 C2 229.9 141.3
CD2 NE2 N2 CA2 50.4 320.7
CB2 CG2 CD2 NE2 56.2 304.0
NE2 CD2 CG2 HG23 296.2 184.0
NE2 CD2 CG2 HG22 176.2 63.9
CG2 CD2 NE2 HD22 240.0 239.9
CG2 CD2 NE2 HD23 120.0 120.0
HD22 CD2 NE2 HD23 240.0 240.1
O2 C2 CA HA 221.4 36.1
CA C2 O2 N2 179.5 180.0
NE2 N2 C2 O2 182.3 166.5
O2 C2 N2 CA2 1.8 347.3
N2 C2 CA HA 40.9 216.0
CA C2 N2 O2 180.5 180.0
C2 N2 NE2 CD2 229.9 141.3
NE2 N2 C2 CA2 180.5 179.3
C2 N2 CA2 CB2 138.4 222.9
C2 N2 CA2 C 265.3 342.9
C2 N2 CA2 HA2 20.7 102.8
CA2 N2 NE2 CD2 50.4 320.7
NE2 N2 CA2 C2 179.5 180.8
CB2 CA2 N2 C 233.2 240.0
CB2 CA2 N2 HA2 117.7 120.1
N2 CA2 CB2 CG2 43.5 303.8
N2 CA2 CB2 HB23 163.5 63.7
N2 CA2 CB2 HB22 283.5 183.9
C CA2 N2 HA2 244.5 240.1
N2 CA2 C O 337.3 318.5
N2 CA2 C OXT 148.9 138.5
N2 CA2 CB2 C 127.7 120.0
N2 CA2 CB2 HA2 243.3 239.9
C CA2 CB2 HA2 115.7 119.9
CB2 CA2 C O 103.5 78.8
CB2 CA2 C OXT 275.2 258.8
CG2 CB2 CA2 HB23 240.0 240.1
CG2 CB2 CA2 HB22 120.0 119.9
CA2 CB2 CG2 CD2 308.3 63.8
CA2 CB2 CG2 HG23 68.3 183.7
CA2 CB2 CG2 HG22 188.3 304.0
HB23 CB2 CA2 HB22 240.0 239.8
N2 CA2 C CB2 233.8 239.7
N2 CA2 C HA2 116.3 119.9
CB2 CA2 C HA2 242.5 240.1
C CA2 CB2 CG2 275.8 183.8
C CA2 CB2 HB23 35.8 303.7
C CA2 CB2 HB22 155.8 63.9
O C CA2 OXT 188.4 180.0
CA2 C OXT HXT 188.5 180.1
N2 CA2 HA2 CB2 119.3 120.3
N2 CA2 HA2 C 239.2 240.1
CB2 CA2 HA2 C 119.9 119.9
HA2 CA2 CB2 CG2 160.1 63.9
HA2 CA2 CB2 HB23 280.1 183.8
HA2 CA2 CB2 HB22 40.2 304.0
HA2 CA2 C O 221.0 198.6
HA2 CA2 C OXT 32.6 18.7
NE2 CD2 CG2 CB2 56.2 304.0
CG2 CB2 CA2 C 275.8 183.8
CG2 CB2 CA2 HA2 160.1 63.9
CA2 CB2 CG2 HB23 120.0 119.9
CA2 CB2 CG2 HB22 240.0 240.1
HB23 CB2 CG2 HB22 120.0 120.1
CD2 CG2 CB2 HG23 240.0 240.1
CD2 CG2 CB2 HG22 120.0 119.9
CB2 CG2 CD2 HD22 296.2 183.9
CB2 CG2 CD2 HD23 176.2 64.0
HG23 CG2 CB2 HG22 240.0 239.8
HB23 CB2 CA2 C 35.8 303.7
HB23 CB2 CA2 HA2 280.1 183.8
CA2 CB2 HB23 CG2 235.5 240.3
CA2 CB2 HB23 HB22 117.8 120.1
CG2 CB2 HB23 HB22 242.2 239.9
HB23 CB2 CG2 CD2 188.3 303.9
HB23 CB2 CG2 HG23 308.3 63.8
HB23 CB2 CG2 HG22 68.3 184.0
HB22 CB2 CA2 C 155.8 63.9
HB22 CB2 CA2 HA2 40.2 304.0
CA2 CB2 HB22 CG2 124.5 119.7
CA2 CB2 HB22 HB23 242.2 239.8
CG2 CB2 HB22 HB23 117.8 120.1
HB22 CB2 CG2 CD2 68.2 183.7
HB22 CB2 CG2 HG23 188.2 303.6
HB22 CB2 CG2 HG22 308.3 63.9
NE2 CD2 CG2 HD22 120.0 120.1
NE2 CD2 CG2 HD23 240.0 239.9
CD2 CG2 CB2 HB23 188.3 303.9
CD2 CG2 CB2 HB22 68.2 183.7
CB2 CG2 CD2 HG23 120.0 120.0
CB2 CG2 CD2 HG22 240.0 240.1
HG23 CG2 CD2 HG22 120.0 120.1
HD22 CD2 CG2 HD23 120.0 119.9
HG23 CG2 CB2 HB23 308.3 63.8
HG23 CG2 CB2 HB22 188.2 303.6
CB2 CG2 HG23 CD2 239.6 240.3
CB2 CG2 HG23 HG22 119.8 120.2
CD2 CG2 HG23 HG22 240.2 239.9
HG23 CG2 CD2 HD22 176.2 63.9
HG23 CG2 CD2 HD23 56.2 304.1
HG22 CG2 CB2 HB23 68.3 184.0
HG22 CG2 CB2 HB22 308.3 63.9
CB2 CG2 HG22 CD2 120.4 119.6
CB2 CG2 HG22 HG23 240.2 239.7
CD2 CG2 HG22 HG23 119.8 120.1
HG22 CG2 CD2 HD22 56.2 303.8
HG22 CG2 CD2 HD23 296.2 183.9
NE2 CD2 HD22 CG2 239.6 239.7
NE2 CD2 HD22 HD23 119.8 119.9
HD22 CD2 CG2 HG23 176.2 63.9
HD22 CD2 CG2 HG22 56.2 303.8
CG2 CD2 HD22 HD23 240.2 240.1
NE2 CD2 HD23 CG2 120.4 120.3
NE2 CD2 HD23 HD22 240.2 240.2
HD23 CD2 CG2 HG23 56.2 304.1
HD23 CD2 CG2 HG22 296.2 183.9
CG2 CD2 HD23 HD22 119.8 119.9
O C CA2 HA2 221.0 198.6
CA2 C O OXT 171.1 180.0
O C OXT HXT 360.0 0.1
OXT C CA2 HA2 32.6 18.7
CA2 C OXT O 188.5 180.0