PDB Chemical Component OD1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OD1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N3	C17	1.467	1.469
C17	C16	1.503	1.531
C16	C15	1.516	1.530
C15	N2	1.459	1.465
N2	C14	1.335	1.348
O2	C14	1.231	1.217
C14	C13	1.486	1.465
C13	C12	1.364	1.367
C13	S2	1.723	1.759
C12	C11	1.402	1.367
S2	C10	1.724	1.758
C11	C10	1.366	1.366
C10	C5	1.471	1.475
C5	C4	1.382	1.385
C5	C6	1.411	1.428
C4	C3	1.384	1.385
C8	C6	1.449	1.400
C8	C7	1.364	1.339
N1	C9	1.318	1.348
C6	C1	1.411	1.399
C7	C9	1.484	1.469
C7	S1	1.743	1.755
C3	C2	1.376	1.376
C9	O1	1.235	1.216
C1	C2	1.399	1.400
C1	S1	1.733	1.760
C4	H1	1.080	1.080
C11	H2	1.081	1.080
C8	H4	1.080	1.080
C12	H6	1.080	1.080
N1	H9	1.000	0.970
N1	H10	1.000	0.970
N2	H11	1.000	0.970
C3	H12	1.080	1.080
N3	H13	1.000	1.009
N3	H14	1.000	1.010
C2	H16	1.080	1.080
C15	H17	1.100	1.091
C15	H18	1.100	1.089
C16	H19	1.100	1.090
C16	H20	1.100	1.090
C17	H21	1.100	1.090
C17	H22	1.101	1.091

Bond Angles for OD1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N3	C17	C16	112.3	109.5
C17	N3	H13	109.5	111.0
C17	N3	H14	109.5	111.0
N3	C17	H21	108.8	109.5
N3	C17	H22	108.8	109.4
C17	C16	H19	108.4	109.4
C17	C16	H20	108.4	109.5
C16	C15	H17	108.8	109.4
C16	C15	H18	108.8	109.5
C15	N2	H11	118.8	120.1
C14	C13	C12	131.6	125.2
C14	C13	S2	118.2	125.2
C13	C12	H6	123.9	122.6
C12	C11	H2	123.5	122.6
C10	C11	H2	123.5	122.6
C5	C4	C3	121.8	120.4
C5	C4	H1	119.1	119.8
C5	C6	C1	118.9	118.5
C4	C3	C2	120.8	120.4
C3	C4	H1	119.1	119.8
C4	C3	H12	119.6	119.8
C8	C6	C1	111.3	112.7
C8	C7	C9	127.5	124.7
C8	C7	S1	112.8	110.6
N1	C9	O1	123.4	120.0
C6	C1	C2	121.2	120.0
C6	C1	S1	111.9	109.5
C9	C7	S1	119.7	124.7
C7	C9	O1	119.2	120.0
C7	S1	C1	91.3	91.6
C3	C2	C1	118.6	120.6
C2	C3	H12	119.6	119.8
C3	C2	H16	120.7	119.7
C2	C1	S1	126.9	130.4
C1	C2	H16	120.7	119.7
H9	N1	H10	120.0	120.0
H13	N3	H14	109.5	111.0
H17	C15	H18	109.5	109.5
H19	C16	H20	109.5	109.4
H21	C17	H22	109.5	109.5

Torsion Angles for OD1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N3	C17	C16	H19	291.8	60.0
N3	C17	C16	H20	50.6	300.1
H13	N3	C17	H14	240.0	236.1
H21	C17	N3	H22	240.8	239.9
C16	C17	N3	H13	180.0	180.0
C16	C17	N3	H14	300.0	303.9
N3	C17	C16	H21	120.4	120.1
N3	C17	C16	H22	239.6	240.1
C17	C16	C15	H17	327.9	60.1
C17	C16	C15	H18	87.1	300.0
H19	C16	C17	H20	241.3	120.0
N3	C17	C16	C15	171.2	180.0
C16	C15	N2	H11	321.5	0.1
H17	C15	C16	H18	240.8	120.0
N2	C14	C13	S2	166.9	0.3
C14	C13	C12	H6	18.7	359.9
C14	C13	C12	S2	181.2	180.2
C13	C12	C11	H2	166.0	180.3
C14	C13	S2	C12	179.0	179.8
S2	C13	C12	H6	197.5	179.8
C14	C13	C12	C11	198.7	180.0
C10	C11	C12	H2	180.0	179.7
C14	C13	S2	C10	165.9	180.1
S2	C10	C11	H2	183.8	179.9
C12	C11	C10	H2	180.0	180.3
C10	C5	C4	C3	179.7	179.9
C10	C5	C4	H1	359.7	359.7
C10	C5	C6	C1	180.1	180.0
C5	C4	C3	C2	0.5	359.7
C3	C4	C5	H1	180.0	180.3
C5	C4	C3	H12	180.5	179.6
C6	C5	C4	C3	359.7	0.1
C6	C5	C4	H1	179.7	179.8
C8	C6	C5	C1	180.0	180.1
C5	C6	C1	C2	0.1	0.3
C5	C6	C1	S1	179.9	180.1
C5	C4	C3	H1	180.0	179.7
C4	C3	C2	C1	359.7	0.5
C2	C3	C4	H12	180.0	180.1
C4	C3	C2	H16	179.7	179.9
C5	C6	C8	C1	180.0	179.9
C8	C6	C1	C2	180.1	180.2
C8	C6	C1	S1	359.9	0.0
C7	C8	C6	C1	1.7	360.0
C9	C7	C8	S1	180.4	179.9
C8	C7	C9	O1	171.9	0.1
C8	C7	S1	C1	2.2	360.0
N1	C9	C7	S1	172.7	360.0
C7	C9	N1	O1	179.6	180.1
C7	S1	C1	C6	358.9	360.0
C3	C2	C1	C6	0.0	359.4
C2	C1	C6	S1	180.2	180.2
C6	C1	C2	H16	180.0	180.0
C8	C7	C9	S1	179.6	180.1
N1	C9	C7	O1	180.4	179.9
C9	C7	S1	C1	181.8	180.1
C8	C7	S1	C9	180.4	179.9
C6	C1	S1	C7	358.9	360.0
S1	C7	C9	O1	352.3	180.1
C2	C1	S1	C7	178.7	179.7
C2	C3	C4	H1	180.5	180.0
C4	C3	C2	H12	180.0	179.9
C6	C1	C2	C3	0.0	359.4
C3	C2	C1	S1	180.2	179.7
C1	C2	C3	H16	180.0	180.6
O1	C9	C7	S1	352.3	180.1
C6	C1	C2	S1	179.8	179.7
C7	S1	C1	C2	178.7	179.7
C1	C2	C3	H12	179.7	180.6
C3	C2	C1	H16	180.0	179.4
C6	C1	S1	C2	180.2	180.3
S1	C1	C2	H16	0.3	0.3
C5	C4	H1	C3	180.0	180.3
H1	C4	C3	C2	180.5	180.0
H1	C4	C3	H12	0.5	359.9
H4	C8	C6	C1	181.7	180.0
H4	C8	C7	C9	357.8	359.9
H4	C8	C7	S1	177.4	180.0
H6	C12	C11	H2	346.0	0.3
H9	N1	C9	O1	0.0	180.0
H10	N1	C9	O1	180.0	359.9
C4	C3	H12	C2	180.0	180.1
H12	C3	C4	H1	0.5	359.9
H12	C3	C2	C1	179.7	180.6
H12	C3	C2	H16	359.7	0.0
H13	N3	C17	C16	180.0	180.0
C17	N3	H13	H14	120.0	123.9
H13	N3	C17	H21	300.4	300.0
H13	N3	C17	H22	59.6	60.1
H14	N3	C17	C16	300.0	303.9
C17	N3	H14	H13	240.0	236.1
H14	N3	C17	H21	60.4	63.9
H14	N3	C17	H22	179.6	184.0
C3	C2	H16	C1	180.0	180.6
H16	C2	C3	H12	359.7	0.0
H16	C2	C1	S1	0.3	0.3
C16	C15	H17	H18	118.7	240.0
H17	C15	N2	H11	201.1	120.0
C16	C15	H18	H17	241.2	120.0
H18	C15	N2	H11	81.8	240.1
C17	C16	H19	H20	118.1	240.0
H19	C16	C15	H17	207.3	180.0
H19	C16	C15	H18	326.5	60.0
C17	C16	H20	H19	241.9	119.9
H20	C16	C15	H17	88.5	300.0
H20	C16	C15	H18	207.7	180.0
N3	C17	H21	C16	237.4	240.0
H21	C17	N3	H13	300.4	300.0
H21	C17	N3	H14	60.4	63.9
N3	C17	H21	H22	118.7	120.0
H21	C17	C16	H19	171.4	300.0
H21	C17	C16	H20	290.2	180.0
N3	C17	H22	C16	122.6	120.0
H22	C17	N3	H13	59.6	60.1
H22	C17	N3	H14	179.6	184.0
N3	C17	H22	H21	241.3	239.9
H22	C17	C16	H19	52.3	179.9
H22	C17	C16	H20	171.0	60.0