PDB Chemical Component OCY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OCY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.446 |
1.469 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.019 |
1.008 |
| CA |
CB |
1.519 |
1.529 |
| CA |
C |
1.524 |
1.506 |
| CA |
HA |
1.115 |
1.091 |
| CB |
SG |
1.752 |
1.812 |
| CB |
HB2 |
1.115 |
1.091 |
| CB |
HB3 |
1.114 |
1.090 |
| SG |
CD |
1.802 |
1.813 |
| CD |
CE |
1.528 |
1.529 |
| CD |
HD2 |
1.115 |
1.090 |
| CD |
HD3 |
1.116 |
1.090 |
| CE |
OZ |
1.419 |
1.429 |
| CE |
HE2 |
1.115 |
1.090 |
| CE |
HE3 |
1.115 |
1.089 |
| OZ |
HZ |
0.950 |
0.967 |
| C |
O |
1.220 |
1.209 |
| C |
OXT |
1.333 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for OCY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
111.8 |
106.7 |
| CA |
N |
H2 |
111.4 |
106.7 |
| N |
CA |
CB |
111.8 |
109.5 |
| N |
CA |
C |
110.4 |
109.5 |
| N |
CA |
HA |
107.2 |
109.4 |
| H |
N |
H2 |
111.4 |
106.7 |
| CB |
CA |
C |
109.2 |
109.6 |
| CB |
CA |
HA |
108.4 |
109.4 |
| CA |
CB |
SG |
122.2 |
109.5 |
| CA |
CB |
HB2 |
107.7 |
109.4 |
| CA |
CB |
HB3 |
107.7 |
109.5 |
| C |
CA |
HA |
109.8 |
109.4 |
| CA |
C |
O |
121.5 |
120.0 |
| CA |
C |
OXT |
116.3 |
120.1 |
| SG |
CB |
HB2 |
107.7 |
109.4 |
| SG |
CB |
HB3 |
107.7 |
109.5 |
| CB |
SG |
CD |
114.6 |
100.1 |
| HB2 |
CB |
HB3 |
102.2 |
109.4 |
| SG |
CD |
CE |
109.8 |
109.5 |
| SG |
CD |
HD2 |
112.0 |
109.5 |
| SG |
CD |
HD3 |
112.0 |
109.5 |
| CE |
CD |
HD2 |
112.1 |
109.5 |
| CE |
CD |
HD3 |
112.1 |
109.5 |
| CD |
CE |
OZ |
109.8 |
109.5 |
| CD |
CE |
HE2 |
112.1 |
109.5 |
| CD |
CE |
HE3 |
112.0 |
109.4 |
| HD2 |
CD |
HD3 |
98.3 |
109.4 |
| OZ |
CE |
HE2 |
112.1 |
109.4 |
| OZ |
CE |
HE3 |
112.1 |
109.4 |
| CE |
OZ |
HZ |
109.8 |
106.9 |
| HE2 |
CE |
HE3 |
98.4 |
109.5 |
| O |
C |
OXT |
122.2 |
119.9 |
| C |
OXT |
HXT |
116.3 |
120.1 |
Torsion Angles for OCY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.4 |
113.7 |
| CB |
CA |
N |
C |
238.2 |
239.9 |
| CB |
CA |
N |
HA |
118.7 |
120.0 |
| N |
CA |
CB |
SG |
67.2 |
300.1 |
| N |
CA |
CB |
HB2 |
192.4 |
60.1 |
| N |
CA |
CB |
HB3 |
301.9 |
179.9 |
| C |
CA |
N |
HA |
240.4 |
240.1 |
| N |
CA |
C |
O |
164.5 |
329.9 |
| N |
CA |
C |
OXT |
342.6 |
150.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
CB |
180.1 |
53.7 |
| H |
N |
CA |
C |
301.9 |
173.8 |
| H |
N |
CA |
HA |
61.4 |
293.7 |
| CA |
N |
H2 |
H |
125.5 |
113.8 |
| H2 |
N |
CA |
CB |
54.7 |
299.9 |
| H2 |
N |
CA |
C |
176.5 |
60.1 |
| H2 |
N |
CA |
HA |
296.1 |
180.0 |
| CB |
CA |
N |
H |
180.1 |
53.7 |
| CB |
CA |
N |
H2 |
54.7 |
299.9 |
| N |
CA |
CB |
C |
122.5 |
120.1 |
| N |
CA |
CB |
HA |
242.1 |
240.1 |
| C |
CA |
CB |
HA |
119.6 |
120.0 |
| CB |
CA |
C |
O |
287.8 |
90.0 |
| CB |
CA |
C |
OXT |
105.8 |
270.1 |
| SG |
CB |
CA |
HB2 |
234.8 |
240.0 |
| SG |
CB |
CA |
HB3 |
125.3 |
120.1 |
| CA |
CB |
SG |
CD |
303.9 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.1 |
| C |
CA |
N |
H |
301.9 |
173.8 |
| C |
CA |
N |
H2 |
176.5 |
60.1 |
| N |
CA |
C |
CB |
236.7 |
239.9 |
| N |
CA |
C |
HA |
118.0 |
119.9 |
| CB |
CA |
C |
HA |
241.2 |
240.0 |
| C |
CA |
CB |
SG |
304.7 |
180.0 |
| C |
CA |
CB |
HB2 |
69.9 |
300.0 |
| C |
CA |
CB |
HB3 |
179.5 |
59.8 |
| O |
C |
CA |
OXT |
182.0 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
61.4 |
293.7 |
| HA |
CA |
N |
H2 |
296.1 |
180.0 |
| N |
CA |
HA |
CB |
120.8 |
120.0 |
| N |
CA |
HA |
C |
240.1 |
240.1 |
| CB |
CA |
HA |
C |
119.3 |
120.1 |
| HA |
CA |
CB |
SG |
185.1 |
60.0 |
| HA |
CA |
CB |
HB2 |
310.3 |
180.0 |
| HA |
CA |
CB |
HB3 |
59.9 |
299.9 |
| HA |
CA |
C |
O |
46.6 |
210.0 |
| HA |
CA |
C |
OXT |
224.6 |
30.1 |
| SG |
CB |
CA |
C |
304.7 |
180.0 |
| SG |
CB |
CA |
HA |
185.1 |
60.0 |
| CA |
CB |
SG |
HB2 |
125.2 |
120.0 |
| CA |
CB |
SG |
HB3 |
234.7 |
239.9 |
| HB2 |
CB |
SG |
HB3 |
109.5 |
119.9 |
| CB |
SG |
CD |
CE |
315.4 |
180.0 |
| CB |
SG |
CD |
HD2 |
80.8 |
300.0 |
| CB |
SG |
CD |
HD3 |
190.2 |
59.9 |
| HB2 |
CB |
CA |
C |
69.9 |
300.0 |
| HB2 |
CB |
CA |
HA |
310.3 |
180.0 |
| CA |
CB |
HB2 |
SG |
226.5 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
113.3 |
120.0 |
| SG |
CB |
HB2 |
HB3 |
246.7 |
240.0 |
| HB2 |
CB |
SG |
CD |
178.6 |
60.0 |
| HB3 |
CB |
CA |
C |
179.5 |
59.8 |
| HB3 |
CB |
CA |
HA |
59.9 |
299.9 |
| CA |
CB |
HB3 |
SG |
133.5 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
246.7 |
240.1 |
| SG |
CB |
HB3 |
HB2 |
113.2 |
119.9 |
| HB3 |
CB |
SG |
CD |
69.1 |
300.1 |
| CD |
SG |
CB |
HB2 |
178.6 |
60.0 |
| CD |
SG |
CB |
HB3 |
69.1 |
300.1 |
| CE |
CD |
SG |
HD2 |
234.7 |
240.0 |
| CE |
CD |
SG |
HD3 |
125.3 |
120.1 |
| SG |
CD |
CE |
OZ |
257.8 |
180.0 |
| SG |
CD |
CE |
HE2 |
23.0 |
300.0 |
| SG |
CD |
CE |
HE3 |
132.5 |
60.0 |
| HD2 |
CD |
SG |
HD3 |
250.6 |
240.1 |
| SG |
CD |
CE |
HD2 |
125.3 |
120.0 |
| SG |
CD |
CE |
HD3 |
234.7 |
239.9 |
| HD2 |
CD |
CE |
HD3 |
109.5 |
119.9 |
| OZ |
CE |
CD |
HE2 |
234.7 |
240.0 |
| OZ |
CE |
CD |
HE3 |
125.3 |
120.0 |
| CD |
CE |
OZ |
HZ |
180.0 |
180.0 |
| HE2 |
CE |
CD |
HE3 |
250.5 |
240.0 |
| SG |
CD |
HD2 |
CE |
235.9 |
239.9 |
| SG |
CD |
HD2 |
HD3 |
117.9 |
120.0 |
| CE |
CD |
HD2 |
HD3 |
242.0 |
240.1 |
| HD2 |
CD |
CE |
OZ |
132.5 |
59.9 |
| HD2 |
CD |
CE |
HE2 |
257.8 |
179.9 |
| HD2 |
CD |
CE |
HE3 |
7.2 |
299.9 |
| SG |
CD |
HD3 |
CE |
124.0 |
120.1 |
| SG |
CD |
HD3 |
HD2 |
242.1 |
240.1 |
| CE |
CD |
HD3 |
HD2 |
118.0 |
119.9 |
| HD3 |
CD |
CE |
OZ |
23.0 |
300.1 |
| HD3 |
CD |
CE |
HE2 |
148.3 |
60.1 |
| HD3 |
CD |
CE |
HE3 |
257.8 |
180.1 |
| OZ |
CE |
CD |
HD2 |
132.5 |
59.9 |
| OZ |
CE |
CD |
HD3 |
23.0 |
300.1 |
| CD |
CE |
OZ |
HE2 |
125.2 |
120.0 |
| CD |
CE |
OZ |
HE3 |
234.8 |
240.0 |
| HE2 |
CE |
OZ |
HE3 |
109.5 |
120.0 |
| HE2 |
CE |
CD |
HD2 |
257.8 |
179.9 |
| HE2 |
CE |
CD |
HD3 |
148.3 |
60.1 |
| CD |
CE |
HE2 |
OZ |
236.0 |
239.9 |
| CD |
CE |
HE2 |
HE3 |
118.0 |
120.0 |
| OZ |
CE |
HE2 |
HE3 |
241.9 |
240.0 |
| HE2 |
CE |
OZ |
HZ |
54.8 |
60.0 |
| HE3 |
CE |
CD |
HD2 |
7.2 |
299.9 |
| HE3 |
CE |
CD |
HD3 |
257.8 |
180.1 |
| CD |
CE |
HE3 |
OZ |
123.9 |
120.1 |
| CD |
CE |
HE3 |
HE2 |
242.0 |
240.0 |
| OZ |
CE |
HE3 |
HE2 |
118.1 |
120.0 |
| HE3 |
CE |
OZ |
HZ |
305.2 |
300.0 |
| HZ |
OZ |
CE |
HE2 |
54.8 |
60.0 |
| HZ |
OZ |
CE |
HE3 |
305.2 |
300.0 |
| O |
C |
CA |
HA |
46.6 |
210.0 |
| CA |
C |
O |
OXT |
177.9 |
180.1 |
| O |
C |
OXT |
HXT |
358.1 |
0.1 |
| OXT |
C |
CA |
HA |
224.6 |
30.1 |
| CA |
C |
OXT |
O |
182.0 |
179.9 |