PDB Chemical Component OC9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OC9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
CAC |
1.530 |
1.530 |
| CAA |
HAA1 |
1.115 |
1.090 |
| CAA |
HAA2 |
1.115 |
1.090 |
| CAA |
HAA3 |
1.115 |
1.091 |
| CAC |
CAE |
1.531 |
1.530 |
| CAC |
HAC1 |
1.115 |
1.090 |
| CAC |
HAC2 |
1.115 |
1.090 |
| CAE |
CAG |
1.530 |
1.530 |
| CAE |
HAE1 |
1.115 |
1.091 |
| CAE |
HAE2 |
1.115 |
1.090 |
| CAG |
CAI |
1.530 |
1.530 |
| CAG |
HAG1 |
1.115 |
1.090 |
| CAG |
HAG2 |
1.115 |
1.090 |
| CAI |
CAH |
1.529 |
1.530 |
| CAI |
HAI1 |
1.115 |
1.091 |
| CAI |
HAI2 |
1.115 |
1.090 |
| CAH |
CAF |
1.532 |
1.530 |
| CAH |
HAH1 |
1.115 |
1.090 |
| CAH |
HAH2 |
1.115 |
1.090 |
| CAF |
CAD |
1.531 |
1.530 |
| CAF |
HAF1 |
1.115 |
1.090 |
| CAF |
HAF2 |
1.115 |
1.090 |
| CAD |
OAB |
1.428 |
1.429 |
| CAD |
HAD1 |
1.115 |
1.091 |
| CAD |
HAD2 |
1.115 |
1.090 |
| OAB |
HAB |
0.950 |
0.967 |
Bond Angles for OC9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAC |
CAA |
HAA1 |
111.7 |
109.5 |
| CAC |
CAA |
HAA2 |
110.9 |
109.5 |
| CAC |
CAA |
HAA3 |
111.7 |
109.4 |
| CAA |
CAC |
CAE |
110.9 |
109.5 |
| CAA |
CAC |
HAC1 |
111.7 |
109.5 |
| CAA |
CAC |
HAC2 |
111.7 |
109.5 |
| HAA1 |
CAA |
HAA2 |
111.7 |
109.5 |
| HAA1 |
CAA |
HAA3 |
98.8 |
109.4 |
| HAA2 |
CAA |
HAA3 |
111.6 |
109.5 |
| CAE |
CAC |
HAC1 |
111.7 |
109.4 |
| CAE |
CAC |
HAC2 |
111.7 |
109.4 |
| CAC |
CAE |
CAG |
111.4 |
109.5 |
| CAC |
CAE |
HAE1 |
111.5 |
109.5 |
| CAC |
CAE |
HAE2 |
111.5 |
109.5 |
| HAC1 |
CAC |
HAC2 |
98.7 |
109.5 |
| CAG |
CAE |
HAE1 |
111.5 |
109.5 |
| CAG |
CAE |
HAE2 |
111.5 |
109.5 |
| CAE |
CAG |
CAI |
113.5 |
109.5 |
| CAE |
CAG |
HAG1 |
110.7 |
109.5 |
| CAE |
CAG |
HAG2 |
110.7 |
109.5 |
| HAE1 |
CAE |
HAE2 |
98.9 |
109.4 |
| CAI |
CAG |
HAG1 |
110.7 |
109.4 |
| CAI |
CAG |
HAG2 |
110.7 |
109.4 |
| CAG |
CAI |
CAH |
110.1 |
109.5 |
| CAG |
CAI |
HAI1 |
112.0 |
109.4 |
| CAG |
CAI |
HAI2 |
112.0 |
109.5 |
| HAG1 |
CAG |
HAG2 |
99.6 |
109.5 |
| CAH |
CAI |
HAI1 |
112.0 |
109.5 |
| CAH |
CAI |
HAI2 |
112.0 |
109.5 |
| CAI |
CAH |
CAF |
111.6 |
109.5 |
| CAI |
CAH |
HAH1 |
111.5 |
109.4 |
| CAI |
CAH |
HAH2 |
111.4 |
109.4 |
| HAI1 |
CAI |
HAI2 |
98.4 |
109.4 |
| CAF |
CAH |
HAH1 |
111.4 |
109.5 |
| CAF |
CAH |
HAH2 |
111.4 |
109.5 |
| CAH |
CAF |
CAD |
111.8 |
109.5 |
| CAH |
CAF |
HAF1 |
111.3 |
109.5 |
| CAH |
CAF |
HAF2 |
111.3 |
109.5 |
| HAH1 |
CAH |
HAH2 |
98.9 |
109.5 |
| CAD |
CAF |
HAF1 |
111.3 |
109.4 |
| CAD |
CAF |
HAF2 |
111.3 |
109.4 |
| CAF |
CAD |
OAB |
111.3 |
109.5 |
| CAF |
CAD |
HAD1 |
111.5 |
109.5 |
| CAF |
CAD |
HAD2 |
111.5 |
109.5 |
| HAF1 |
CAF |
HAF2 |
99.1 |
109.5 |
| OAB |
CAD |
HAD1 |
111.5 |
109.4 |
| OAB |
CAD |
HAD2 |
111.5 |
109.5 |
| CAD |
OAB |
HAB |
111.3 |
106.8 |
| HAD1 |
CAD |
HAD2 |
98.8 |
109.4 |
Torsion Angles for OC9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAA1 |
CAA |
CAC |
HAA2 |
234.8 |
239.9 |
| HAA1 |
CAA |
CAC |
HAA3 |
109.5 |
120.0 |
| HAA2 |
CAA |
CAC |
HAA3 |
234.8 |
240.0 |
| CAE |
CAC |
CAA |
HAC1 |
125.2 |
240.0 |
| CAE |
CAC |
CAA |
HAC2 |
234.7 |
120.0 |
| CAA |
CAC |
CAE |
CAG |
196.8 |
180.0 |
| CAA |
CAC |
CAE |
HAE1 |
71.5 |
300.0 |
| CAA |
CAC |
CAE |
HAE2 |
322.0 |
60.0 |
| HAC1 |
CAC |
CAA |
HAC2 |
109.5 |
239.9 |
| CAC |
CAA |
HAA1 |
HAA2 |
124.8 |
120.1 |
| CAC |
CAA |
HAA1 |
HAA3 |
242.4 |
240.0 |
| HAA1 |
CAA |
CAC |
CAE |
54.8 |
300.0 |
| HAA1 |
CAA |
CAC |
HAC1 |
289.5 |
59.9 |
| HAA1 |
CAA |
CAC |
HAC2 |
180.1 |
180.0 |
| HAA2 |
CAA |
HAA1 |
HAA3 |
117.6 |
120.0 |
| CAC |
CAA |
HAA2 |
HAA1 |
234.8 |
239.9 |
| CAC |
CAA |
HAA2 |
HAA3 |
125.2 |
120.0 |
| HAA2 |
CAA |
CAC |
CAE |
180.0 |
60.0 |
| HAA2 |
CAA |
CAC |
HAC1 |
54.8 |
180.0 |
| HAA2 |
CAA |
CAC |
HAC2 |
305.3 |
300.1 |
| HAA1 |
CAA |
HAA2 |
HAA3 |
250.5 |
240.0 |
| CAC |
CAA |
HAA3 |
HAA1 |
117.6 |
120.0 |
| CAC |
CAA |
HAA3 |
HAA2 |
235.2 |
240.0 |
| HAA3 |
CAA |
CAC |
CAE |
305.2 |
180.0 |
| HAA3 |
CAA |
CAC |
HAC1 |
180.0 |
300.0 |
| HAA3 |
CAA |
CAC |
HAC2 |
70.5 |
60.0 |
| HAA1 |
CAA |
HAA3 |
HAA2 |
117.6 |
120.0 |
| CAE |
CAC |
CAA |
HAA1 |
54.8 |
300.0 |
| CAE |
CAC |
CAA |
HAA2 |
180.0 |
60.0 |
| CAE |
CAC |
CAA |
HAA3 |
305.2 |
180.0 |
| CAA |
CAC |
CAE |
HAC1 |
234.7 |
120.0 |
| CAA |
CAC |
CAE |
HAC2 |
125.3 |
240.0 |
| HAC1 |
CAC |
CAE |
HAC2 |
250.5 |
120.0 |
| CAG |
CAE |
CAC |
HAE1 |
125.3 |
240.0 |
| CAG |
CAE |
CAC |
HAE2 |
234.8 |
120.0 |
| CAC |
CAE |
CAG |
CAI |
284.3 |
180.0 |
| CAC |
CAE |
CAG |
HAG1 |
159.1 |
300.0 |
| CAC |
CAE |
CAG |
HAG2 |
49.6 |
60.0 |
| HAE1 |
CAE |
CAC |
HAE2 |
109.5 |
240.0 |
| HAC1 |
CAC |
CAA |
HAA1 |
289.5 |
59.9 |
| HAC1 |
CAC |
CAA |
HAA2 |
54.8 |
180.0 |
| HAC1 |
CAC |
CAA |
HAA3 |
180.0 |
300.0 |
| CAA |
CAC |
HAC1 |
CAE |
124.8 |
240.0 |
| CAA |
CAC |
HAC1 |
HAC2 |
242.4 |
120.1 |
| CAE |
CAC |
HAC1 |
HAC2 |
117.6 |
240.0 |
| HAC1 |
CAC |
CAE |
CAG |
322.1 |
60.0 |
| HAC1 |
CAC |
CAE |
HAE1 |
196.8 |
180.0 |
| HAC1 |
CAC |
CAE |
HAE2 |
87.3 |
300.0 |
| HAC2 |
CAC |
CAA |
HAA1 |
180.1 |
180.0 |
| HAC2 |
CAC |
CAA |
HAA2 |
305.3 |
300.1 |
| HAC2 |
CAC |
CAA |
HAA3 |
70.5 |
60.0 |
| CAA |
CAC |
HAC2 |
CAE |
235.2 |
120.0 |
| CAA |
CAC |
HAC2 |
HAC1 |
117.6 |
239.9 |
| CAE |
CAC |
HAC2 |
HAC1 |
242.4 |
120.0 |
| HAC2 |
CAC |
CAE |
CAG |
71.5 |
300.0 |
| HAC2 |
CAC |
CAE |
HAE1 |
306.3 |
60.0 |
| HAC2 |
CAC |
CAE |
HAE2 |
196.8 |
180.0 |
| CAG |
CAE |
CAC |
HAC1 |
322.1 |
60.0 |
| CAG |
CAE |
CAC |
HAC2 |
71.5 |
300.0 |
| CAC |
CAE |
CAG |
HAE1 |
234.7 |
120.0 |
| CAC |
CAE |
CAG |
HAE2 |
125.2 |
240.0 |
| HAE1 |
CAE |
CAG |
HAE2 |
250.5 |
119.9 |
| CAI |
CAG |
CAE |
HAG1 |
125.3 |
240.0 |
| CAI |
CAG |
CAE |
HAG2 |
234.7 |
120.0 |
| CAE |
CAG |
CAI |
CAH |
169.7 |
180.0 |
| CAE |
CAG |
CAI |
HAI1 |
44.5 |
300.0 |
| CAE |
CAG |
CAI |
HAI2 |
295.0 |
59.9 |
| HAG1 |
CAG |
CAE |
HAG2 |
109.5 |
240.0 |
| HAE1 |
CAE |
CAC |
HAC1 |
196.8 |
180.0 |
| HAE1 |
CAE |
CAC |
HAC2 |
306.3 |
60.0 |
| CAC |
CAE |
HAE1 |
CAG |
125.2 |
240.0 |
| CAC |
CAE |
HAE1 |
HAE2 |
242.6 |
120.0 |
| CAG |
CAE |
HAE1 |
HAE2 |
117.4 |
240.1 |
| HAE1 |
CAE |
CAG |
CAI |
49.6 |
60.0 |
| HAE1 |
CAE |
CAG |
HAG1 |
284.4 |
179.9 |
| HAE1 |
CAE |
CAG |
HAG2 |
174.9 |
300.0 |
| HAE2 |
CAE |
CAC |
HAC1 |
87.3 |
300.0 |
| HAE2 |
CAE |
CAC |
HAC2 |
196.8 |
180.0 |
| CAC |
CAE |
HAE2 |
CAG |
234.8 |
120.0 |
| CAC |
CAE |
HAE2 |
HAE1 |
117.4 |
240.0 |
| CAG |
CAE |
HAE2 |
HAE1 |
242.6 |
119.9 |
| HAE2 |
CAE |
CAG |
CAI |
159.1 |
300.0 |
| HAE2 |
CAE |
CAG |
HAG1 |
33.8 |
60.0 |
| HAE2 |
CAE |
CAG |
HAG2 |
284.4 |
180.1 |
| CAI |
CAG |
CAE |
HAE1 |
49.6 |
60.0 |
| CAI |
CAG |
CAE |
HAE2 |
159.1 |
300.0 |
| CAE |
CAG |
CAI |
HAG1 |
234.7 |
120.0 |
| CAE |
CAG |
CAI |
HAG2 |
125.3 |
240.0 |
| HAG1 |
CAG |
CAI |
HAG2 |
250.5 |
120.0 |
| CAH |
CAI |
CAG |
HAI1 |
125.2 |
240.0 |
| CAH |
CAI |
CAG |
HAI2 |
234.7 |
120.1 |
| CAG |
CAI |
CAH |
CAF |
166.3 |
180.0 |
| CAG |
CAI |
CAH |
HAH1 |
41.1 |
300.0 |
| CAG |
CAI |
CAH |
HAH2 |
291.6 |
60.0 |
| HAI1 |
CAI |
CAG |
HAI2 |
109.5 |
240.1 |
| HAG1 |
CAG |
CAE |
HAE1 |
284.4 |
179.9 |
| HAG1 |
CAG |
CAE |
HAE2 |
33.8 |
60.0 |
| CAE |
CAG |
HAG1 |
CAI |
126.8 |
240.0 |
| CAE |
CAG |
HAG1 |
HAG2 |
243.4 |
120.0 |
| CAI |
CAG |
HAG1 |
HAG2 |
116.6 |
240.1 |
| HAG1 |
CAG |
CAI |
CAH |
295.0 |
60.0 |
| HAG1 |
CAG |
CAI |
HAI1 |
169.8 |
180.0 |
| HAG1 |
CAG |
CAI |
HAI2 |
60.3 |
299.9 |
| HAG2 |
CAG |
CAE |
HAE1 |
174.9 |
300.0 |
| HAG2 |
CAG |
CAE |
HAE2 |
284.4 |
180.1 |
| CAE |
CAG |
HAG2 |
CAI |
233.2 |
120.0 |
| CAE |
CAG |
HAG2 |
HAG1 |
116.6 |
240.0 |
| CAI |
CAG |
HAG2 |
HAG1 |
243.4 |
119.9 |
| HAG2 |
CAG |
CAI |
CAH |
44.5 |
300.0 |
| HAG2 |
CAG |
CAI |
HAI1 |
279.2 |
60.1 |
| HAG2 |
CAG |
CAI |
HAI2 |
169.8 |
180.0 |
| CAH |
CAI |
CAG |
HAG1 |
295.0 |
60.0 |
| CAH |
CAI |
CAG |
HAG2 |
44.5 |
300.0 |
| CAG |
CAI |
CAH |
HAI1 |
234.8 |
120.0 |
| CAG |
CAI |
CAH |
HAI2 |
125.3 |
240.0 |
| HAI1 |
CAI |
CAH |
HAI2 |
250.5 |
120.0 |
| CAF |
CAH |
CAI |
HAH1 |
125.3 |
240.0 |
| CAF |
CAH |
CAI |
HAH2 |
234.7 |
120.0 |
| CAI |
CAH |
CAF |
CAD |
159.0 |
180.0 |
| CAI |
CAH |
CAF |
HAF1 |
33.8 |
300.0 |
| CAI |
CAH |
CAF |
HAF2 |
284.3 |
60.0 |
| HAH1 |
CAH |
CAI |
HAH2 |
109.5 |
240.0 |
| HAI1 |
CAI |
CAG |
HAG1 |
169.8 |
180.0 |
| HAI1 |
CAI |
CAG |
HAG2 |
279.2 |
60.1 |
| CAG |
CAI |
HAI1 |
CAH |
124.2 |
240.0 |
| CAG |
CAI |
HAI1 |
HAI2 |
242.1 |
119.9 |
| CAH |
CAI |
HAI1 |
HAI2 |
117.9 |
240.0 |
| HAI1 |
CAI |
CAH |
CAF |
291.6 |
60.0 |
| HAI1 |
CAI |
CAH |
HAH1 |
166.3 |
180.0 |
| HAI1 |
CAI |
CAH |
HAH2 |
56.8 |
300.0 |
| HAI2 |
CAI |
CAG |
HAG1 |
60.3 |
299.9 |
| HAI2 |
CAI |
CAG |
HAG2 |
169.8 |
180.0 |
| CAG |
CAI |
HAI2 |
CAH |
235.8 |
120.1 |
| CAG |
CAI |
HAI2 |
HAI1 |
117.9 |
240.1 |
| CAH |
CAI |
HAI2 |
HAI1 |
242.1 |
120.0 |
| HAI2 |
CAI |
CAH |
CAF |
41.0 |
300.0 |
| HAI2 |
CAI |
CAH |
HAH1 |
275.8 |
60.0 |
| HAI2 |
CAI |
CAH |
HAH2 |
166.3 |
180.0 |
| CAF |
CAH |
CAI |
HAI1 |
291.6 |
60.0 |
| CAF |
CAH |
CAI |
HAI2 |
41.0 |
300.0 |
| CAI |
CAH |
CAF |
HAH1 |
234.7 |
120.0 |
| CAI |
CAH |
CAF |
HAH2 |
125.3 |
240.0 |
| HAH1 |
CAH |
CAF |
HAH2 |
250.6 |
120.1 |
| CAD |
CAF |
CAH |
HAF1 |
125.2 |
240.0 |
| CAD |
CAF |
CAH |
HAF2 |
234.8 |
120.0 |
| CAH |
CAF |
CAD |
OAB |
51.4 |
180.0 |
| CAH |
CAF |
CAD |
HAD1 |
286.1 |
300.0 |
| CAH |
CAF |
CAD |
HAD2 |
176.7 |
60.0 |
| HAF1 |
CAF |
CAH |
HAF2 |
109.5 |
239.9 |
| HAH1 |
CAH |
CAI |
HAI1 |
166.3 |
180.0 |
| HAH1 |
CAH |
CAI |
HAI2 |
275.8 |
60.0 |
| CAI |
CAH |
HAH1 |
CAF |
125.3 |
240.0 |
| CAI |
CAH |
HAH1 |
HAH2 |
242.7 |
120.0 |
| CAF |
CAH |
HAH1 |
HAH2 |
117.3 |
240.0 |
| HAH1 |
CAH |
CAF |
CAD |
284.3 |
60.0 |
| HAH1 |
CAH |
CAF |
HAF1 |
159.1 |
180.0 |
| HAH1 |
CAH |
CAF |
HAF2 |
49.6 |
300.1 |
| HAH2 |
CAH |
CAI |
HAI1 |
56.8 |
300.0 |
| HAH2 |
CAH |
CAI |
HAI2 |
166.3 |
180.0 |
| CAI |
CAH |
HAH2 |
CAF |
234.7 |
120.0 |
| CAI |
CAH |
HAH2 |
HAH1 |
117.3 |
240.0 |
| CAF |
CAH |
HAH2 |
HAH1 |
242.7 |
120.0 |
| HAH2 |
CAH |
CAF |
CAD |
33.8 |
300.0 |
| HAH2 |
CAH |
CAF |
HAF1 |
268.5 |
59.9 |
| HAH2 |
CAH |
CAF |
HAF2 |
159.0 |
180.0 |
| CAD |
CAF |
CAH |
HAH1 |
284.3 |
60.0 |
| CAD |
CAF |
CAH |
HAH2 |
33.8 |
300.0 |
| CAH |
CAF |
CAD |
HAF1 |
234.8 |
120.0 |
| CAH |
CAF |
CAD |
HAF2 |
125.3 |
240.0 |
| HAF1 |
CAF |
CAD |
HAF2 |
250.5 |
120.0 |
| OAB |
CAD |
CAF |
HAD1 |
125.3 |
240.0 |
| OAB |
CAD |
CAF |
HAD2 |
234.7 |
120.0 |
| CAF |
CAD |
OAB |
HAB |
180.0 |
180.0 |
| HAD1 |
CAD |
CAF |
HAD2 |
109.4 |
240.0 |
| HAF1 |
CAF |
CAH |
HAH1 |
159.1 |
180.0 |
| HAF1 |
CAF |
CAH |
HAH2 |
268.5 |
59.9 |
| CAH |
CAF |
HAF1 |
CAD |
125.5 |
240.0 |
| CAH |
CAF |
HAF1 |
HAF2 |
242.7 |
120.0 |
| CAD |
CAF |
HAF1 |
HAF2 |
117.2 |
240.0 |
| HAF1 |
CAF |
CAD |
OAB |
176.6 |
60.0 |
| HAF1 |
CAF |
CAD |
HAD1 |
51.3 |
180.0 |
| HAF1 |
CAF |
CAD |
HAD2 |
301.9 |
300.0 |
| HAF2 |
CAF |
CAH |
HAH1 |
49.6 |
300.1 |
| HAF2 |
CAF |
CAH |
HAH2 |
159.0 |
180.0 |
| CAH |
CAF |
HAF2 |
CAD |
234.5 |
120.0 |
| CAH |
CAF |
HAF2 |
HAF1 |
117.3 |
240.0 |
| CAD |
CAF |
HAF2 |
HAF1 |
242.8 |
120.0 |
| HAF2 |
CAF |
CAD |
OAB |
286.1 |
300.0 |
| HAF2 |
CAF |
CAD |
HAD1 |
160.8 |
60.0 |
| HAF2 |
CAF |
CAD |
HAD2 |
51.4 |
180.0 |
| OAB |
CAD |
CAF |
HAF1 |
176.6 |
60.0 |
| OAB |
CAD |
CAF |
HAF2 |
286.1 |
300.0 |
| CAF |
CAD |
OAB |
HAD1 |
234.7 |
120.0 |
| CAF |
CAD |
OAB |
HAD2 |
125.3 |
239.9 |
| HAD1 |
CAD |
OAB |
HAD2 |
250.5 |
119.9 |
| HAD1 |
CAD |
CAF |
HAF1 |
51.3 |
180.0 |
| HAD1 |
CAD |
CAF |
HAF2 |
160.8 |
60.0 |
| CAF |
CAD |
HAD1 |
OAB |
125.2 |
239.9 |
| CAF |
CAD |
HAD1 |
HAD2 |
242.6 |
120.0 |
| OAB |
CAD |
HAD1 |
HAD2 |
117.5 |
240.1 |
| HAD1 |
CAD |
OAB |
HAB |
305.3 |
60.0 |
| HAD2 |
CAD |
CAF |
HAF1 |
301.9 |
300.0 |
| HAD2 |
CAD |
CAF |
HAF2 |
51.4 |
180.0 |
| CAF |
CAD |
HAD2 |
OAB |
234.8 |
120.1 |
| CAF |
CAD |
HAD2 |
HAD1 |
117.4 |
240.0 |
| OAB |
CAD |
HAD2 |
HAD1 |
242.5 |
119.9 |
| HAD2 |
CAD |
OAB |
HAB |
54.7 |
300.1 |
| HAB |
OAB |
CAD |
HAD1 |
305.3 |
60.0 |
| HAB |
OAB |
CAD |
HAD2 |
54.7 |
300.1 |