PDB Chemical Component OB9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OB9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C23 |
C24 |
1.338 |
1.382 |
| C23 |
C22 |
1.340 |
1.383 |
| C24 |
C25 |
1.343 |
1.381 |
| C22 |
C21 |
1.342 |
1.381 |
| C25 |
C19 |
1.353 |
1.389 |
| C21 |
C19 |
1.351 |
1.390 |
| O05 |
S01 |
1.458 |
1.421 |
| C19 |
N01 |
1.284 |
1.397 |
| O04 |
S01 |
1.460 |
1.421 |
| S01 |
N01 |
1.703 |
1.656 |
| S01 |
C17 |
1.867 |
1.814 |
| F02 |
C26 |
1.302 |
1.399 |
| N01 |
C20 |
1.511 |
1.465 |
| F03 |
C26 |
1.299 |
1.398 |
| C20 |
C26 |
1.493 |
1.530 |
| C26 |
F01 |
1.305 |
1.399 |
| C17 |
C18 |
1.547 |
1.576 |
| C17 |
C11 |
1.543 |
1.560 |
| C18 |
C09 |
1.535 |
1.560 |
| C11 |
O03 |
1.405 |
1.464 |
| C11 |
C07 |
1.526 |
1.531 |
| O03 |
C09 |
1.404 |
1.468 |
| C09 |
C08 |
1.527 |
1.531 |
| C07 |
C05 |
1.351 |
1.473 |
| C07 |
C08 |
1.355 |
1.357 |
| C04 |
C03 |
1.343 |
1.378 |
| C04 |
C05 |
1.348 |
1.399 |
| C03 |
C02 |
1.340 |
1.389 |
| C05 |
C06 |
1.347 |
1.398 |
| C02 |
O01 |
1.359 |
1.359 |
| C02 |
C01 |
1.343 |
1.389 |
| C06 |
C01 |
1.342 |
1.378 |
| C08 |
C10 |
1.348 |
1.473 |
| C10 |
C16 |
1.348 |
1.399 |
| C10 |
C12 |
1.348 |
1.398 |
| C16 |
C15 |
1.342 |
1.378 |
| C12 |
C13 |
1.343 |
1.378 |
| C15 |
C14 |
1.342 |
1.389 |
| C13 |
C14 |
1.342 |
1.389 |
| C14 |
O02 |
1.359 |
1.358 |
| C01 |
H1 |
1.080 |
1.079 |
| C03 |
H2 |
1.080 |
1.079 |
| C04 |
H3 |
1.080 |
1.080 |
| C06 |
H4 |
1.080 |
1.081 |
| O01 |
H5 |
0.951 |
0.967 |
| C09 |
H6 |
1.100 |
1.090 |
| C11 |
H7 |
1.100 |
1.090 |
| C12 |
H8 |
1.080 |
1.080 |
| C13 |
H9 |
1.080 |
1.081 |
| C15 |
H10 |
1.080 |
1.080 |
| C16 |
H11 |
1.080 |
1.080 |
| O02 |
H12 |
0.950 |
0.967 |
| C17 |
H13 |
1.100 |
1.090 |
| C18 |
H14 |
1.100 |
1.090 |
| C18 |
H15 |
1.100 |
1.090 |
| C20 |
H16 |
1.100 |
1.091 |
| C20 |
H17 |
1.100 |
1.090 |
| C21 |
H18 |
1.080 |
1.079 |
| C22 |
H19 |
1.080 |
1.080 |
| C23 |
H20 |
1.080 |
1.080 |
| C24 |
H21 |
1.080 |
1.079 |
| C25 |
H22 |
1.080 |
1.080 |
Bond Angles for OB9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C23 |
C24 |
C25 |
120.0 |
120.1 |
| C24 |
C23 |
H20 |
120.7 |
120.0 |
| C23 |
C24 |
H21 |
120.0 |
120.0 |
| C23 |
C22 |
H19 |
119.7 |
120.0 |
| C25 |
C24 |
H21 |
120.0 |
119.9 |
| C24 |
C25 |
H22 |
118.3 |
120.1 |
| C22 |
C21 |
H18 |
118.6 |
120.1 |
| C19 |
N01 |
C20 |
116.6 |
120.0 |
| S01 |
N01 |
C20 |
119.9 |
120.0 |
| S01 |
C17 |
H13 |
105.7 |
110.8 |
| N01 |
C20 |
C26 |
116.9 |
109.5 |
| N01 |
C20 |
H16 |
107.6 |
109.4 |
| N01 |
C20 |
H17 |
107.6 |
109.5 |
| C20 |
C26 |
F01 |
110.8 |
109.5 |
| C26 |
C20 |
H16 |
107.6 |
109.5 |
| C26 |
C20 |
H17 |
107.6 |
109.5 |
| C18 |
C17 |
H13 |
109.1 |
111.0 |
| C17 |
C18 |
H14 |
111.7 |
110.9 |
| C17 |
C18 |
H15 |
111.6 |
111.0 |
| C17 |
C11 |
O03 |
103.4 |
101.1 |
| C17 |
C11 |
H7 |
113.7 |
116.2 |
| C18 |
C09 |
H6 |
113.5 |
115.7 |
| O03 |
C11 |
H7 |
116.2 |
115.9 |
| O03 |
C09 |
H6 |
115.8 |
115.9 |
| C09 |
C08 |
C10 |
121.4 |
127.0 |
| C07 |
C08 |
C10 |
134.5 |
127.0 |
| C04 |
C03 |
H2 |
119.3 |
119.9 |
| C04 |
C05 |
C06 |
115.5 |
119.8 |
| C05 |
C04 |
H3 |
118.8 |
120.1 |
| C03 |
C02 |
O01 |
121.2 |
119.8 |
| C05 |
C06 |
H4 |
118.9 |
120.0 |
| C02 |
O01 |
H5 |
109.5 |
114.0 |
| C02 |
C01 |
H1 |
119.2 |
120.0 |
| C06 |
C01 |
H1 |
119.2 |
120.0 |
| C08 |
C10 |
C16 |
120.7 |
120.1 |
| C08 |
C10 |
C12 |
123.3 |
120.1 |
| C12 |
C10 |
C16 |
116.0 |
119.8 |
| C10 |
C16 |
C15 |
122.0 |
119.9 |
| C10 |
C16 |
H11 |
119.0 |
120.0 |
| C10 |
C12 |
C13 |
122.1 |
119.9 |
| C10 |
C12 |
H8 |
118.9 |
120.0 |
| C16 |
C15 |
H10 |
119.3 |
120.0 |
| C12 |
C13 |
C14 |
121.3 |
120.1 |
| C13 |
C12 |
H8 |
119.0 |
120.1 |
| C12 |
C13 |
H9 |
119.3 |
119.9 |
| C15 |
C14 |
O02 |
121.0 |
119.9 |
| C13 |
C14 |
O02 |
121.9 |
119.9 |
| C14 |
C13 |
H9 |
119.3 |
119.9 |
| C14 |
O02 |
H12 |
109.5 |
114.0 |
| H14 |
C18 |
H15 |
109.5 |
110.8 |
| H16 |
C20 |
H17 |
109.5 |
109.4 |
Torsion Angles for OB9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C24 |
C23 |
C22 |
H19 |
179.7 |
180.0 |
| C25 |
C24 |
C23 |
H21 |
180.0 |
179.7 |
| C23 |
C24 |
C25 |
H22 |
179.6 |
180.0 |
| C23 |
C22 |
C21 |
H18 |
180.5 |
180.0 |
| C25 |
C24 |
C23 |
H20 |
180.2 |
180.0 |
| C23 |
C24 |
C25 |
H21 |
180.0 |
180.3 |
| O05 |
S01 |
N01 |
C20 |
197.1 |
212.3 |
| O05 |
S01 |
C17 |
H13 |
346.7 |
315.6 |
| S01 |
N01 |
C19 |
C20 |
181.3 |
180.0 |
| C19 |
N01 |
C20 |
C26 |
140.6 |
275.0 |
| C19 |
N01 |
C20 |
H16 |
261.6 |
35.1 |
| C19 |
N01 |
C20 |
H17 |
19.5 |
155.0 |
| O04 |
S01 |
N01 |
C20 |
45.8 |
340.2 |
| O04 |
S01 |
C17 |
H13 |
105.7 |
178.9 |
| C19 |
N01 |
S01 |
C20 |
178.7 |
180.0 |
| N01 |
S01 |
C17 |
H13 |
227.5 |
67.2 |
| S01 |
N01 |
C20 |
C26 |
319.3 |
95.0 |
| S01 |
N01 |
C20 |
H16 |
80.4 |
215.0 |
| S01 |
N01 |
C20 |
H17 |
198.3 |
334.9 |
| C18 |
C17 |
S01 |
H13 |
238.5 |
236.3 |
| S01 |
C17 |
C18 |
H14 |
348.2 |
123.5 |
| S01 |
C17 |
C18 |
H15 |
111.1 |
359.8 |
| S01 |
C17 |
C11 |
O03 |
94.7 |
83.4 |
| S01 |
C17 |
C11 |
H7 |
327.9 |
317.0 |
| F02 |
C26 |
C20 |
H16 |
155.1 |
60.0 |
| F02 |
C26 |
C20 |
H17 |
37.2 |
300.0 |
| N01 |
C20 |
C26 |
F01 |
157.5 |
60.0 |
| C26 |
C20 |
N01 |
H16 |
238.9 |
240.0 |
| C26 |
C20 |
N01 |
H17 |
121.0 |
120.0 |
| H16 |
C20 |
N01 |
H17 |
242.1 |
240.1 |
| F03 |
C26 |
C20 |
H16 |
275.8 |
180.0 |
| F03 |
C26 |
C20 |
H17 |
157.9 |
60.0 |
| N01 |
C20 |
C26 |
H16 |
121.0 |
120.0 |
| N01 |
C20 |
C26 |
H17 |
238.9 |
239.9 |
| H16 |
C20 |
C26 |
H17 |
117.9 |
120.0 |
| F01 |
C26 |
C20 |
H16 |
36.4 |
300.0 |
| F01 |
C26 |
C20 |
H17 |
278.5 |
180.0 |
| S01 |
C17 |
C18 |
H13 |
119.7 |
123.6 |
| C18 |
C17 |
C11 |
O03 |
328.3 |
325.1 |
| C18 |
C17 |
C11 |
H7 |
201.5 |
198.7 |
| C17 |
C18 |
C09 |
H6 |
164.3 |
161.1 |
| H14 |
C18 |
C17 |
H15 |
237.0 |
123.7 |
| O03 |
C11 |
C17 |
H7 |
126.8 |
126.4 |
| O03 |
C09 |
C18 |
H6 |
235.0 |
233.5 |
| C17 |
C11 |
O03 |
H7 |
234.8 |
233.5 |
| C11 |
O03 |
C09 |
H6 |
176.5 |
175.9 |
| C18 |
C09 |
O03 |
H6 |
123.4 |
126.4 |
| C07 |
C08 |
C09 |
C10 |
180.5 |
179.9 |
| C09 |
C08 |
C10 |
C16 |
35.4 |
244.9 |
| C09 |
C08 |
C10 |
C12 |
216.7 |
65.2 |
| C07 |
C05 |
C04 |
H3 |
0.4 |
360.0 |
| C07 |
C05 |
C06 |
H4 |
359.3 |
359.8 |
| C09 |
C08 |
C07 |
C10 |
179.4 |
180.1 |
| C07 |
C08 |
C10 |
C16 |
214.6 |
65.0 |
| C07 |
C08 |
C10 |
C12 |
36.0 |
245.3 |
| C04 |
C03 |
C02 |
O01 |
179.9 |
180.0 |
| C05 |
C04 |
C03 |
H2 |
180.5 |
180.0 |
| C04 |
C05 |
C06 |
H4 |
180.4 |
180.0 |
| C03 |
C02 |
O01 |
H5 |
180.0 |
270.0 |
| C03 |
C02 |
C01 |
H1 |
179.8 |
180.0 |
| C06 |
C05 |
C04 |
H3 |
179.3 |
179.8 |
| C05 |
C06 |
C01 |
H1 |
180.0 |
179.7 |
| O01 |
C02 |
C01 |
H1 |
359.9 |
0.1 |
| C06 |
C01 |
C02 |
H1 |
180.0 |
180.3 |
| C02 |
C01 |
C06 |
H1 |
180.0 |
179.7 |
| C12 |
C10 |
C08 |
C16 |
181.4 |
180.3 |
| C08 |
C10 |
C16 |
C15 |
180.5 |
179.7 |
| C08 |
C10 |
C16 |
H11 |
0.6 |
0.0 |
| C08 |
C10 |
C12 |
C13 |
179.3 |
180.0 |
| C08 |
C10 |
C12 |
H8 |
359.3 |
360.0 |
| C08 |
C10 |
C16 |
C12 |
181.3 |
180.3 |
| C16 |
C10 |
C12 |
C13 |
0.7 |
0.3 |
| C16 |
C10 |
C12 |
H8 |
180.6 |
180.3 |
| C10 |
C16 |
C15 |
H10 |
180.5 |
180.3 |
| C08 |
C10 |
C12 |
C16 |
178.7 |
179.7 |
| C12 |
C10 |
C16 |
C15 |
359.3 |
359.4 |
| C12 |
C10 |
C16 |
H11 |
179.3 |
179.7 |
| C10 |
C12 |
C13 |
C14 |
359.7 |
360.0 |
| C13 |
C12 |
C10 |
H8 |
180.0 |
180.0 |
| C10 |
C12 |
C13 |
H9 |
179.7 |
180.0 |
| C10 |
C16 |
C15 |
H11 |
180.0 |
180.3 |
| C16 |
C15 |
C14 |
O02 |
179.9 |
179.7 |
| C13 |
C12 |
C10 |
C16 |
0.7 |
0.3 |
| C10 |
C12 |
C13 |
H8 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
O02 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H9 |
180.0 |
179.9 |
| C10 |
C16 |
C15 |
C14 |
0.5 |
0.5 |
| C13 |
C14 |
C15 |
O02 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H9 |
180.0 |
179.9 |
| C15 |
C14 |
O02 |
H12 |
180.0 |
270.0 |
| C14 |
C13 |
C12 |
H8 |
179.7 |
180.0 |
| C12 |
C13 |
C14 |
H9 |
180.0 |
180.1 |
| C15 |
C14 |
C13 |
O02 |
180.0 |
180.0 |
| C13 |
C14 |
O02 |
H12 |
0.0 |
90.0 |
| O02 |
C14 |
C13 |
H9 |
360.0 |
360.0 |
| H2 |
C03 |
C02 |
O01 |
359.9 |
359.9 |
| H3 |
C04 |
C03 |
H2 |
0.5 |
0.0 |
| H3 |
C04 |
C05 |
C06 |
179.3 |
179.8 |
| H4 |
C06 |
C01 |
H1 |
360.0 |
0.2 |
| H6 |
C09 |
C08 |
C10 |
20.8 |
22.2 |
| C17 |
C11 |
H7 |
O03 |
119.8 |
118.5 |
| H8 |
C12 |
C10 |
C16 |
180.6 |
180.3 |
| C10 |
C12 |
H8 |
C13 |
180.0 |
180.0 |
| H8 |
C12 |
C13 |
C14 |
179.7 |
180.0 |
| H8 |
C12 |
C13 |
H9 |
359.7 |
0.1 |
| C12 |
C13 |
H9 |
C14 |
180.0 |
179.9 |
| H9 |
C13 |
C12 |
H8 |
359.7 |
0.1 |
| H9 |
C13 |
C14 |
O02 |
360.0 |
360.0 |
| H10 |
C15 |
C14 |
O02 |
359.9 |
359.9 |
| C10 |
C16 |
H11 |
C15 |
180.0 |
179.7 |
| H11 |
C16 |
C15 |
H10 |
0.5 |
0.0 |
| H13 |
C17 |
C18 |
H14 |
228.5 |
359.8 |
| H13 |
C17 |
C18 |
H15 |
351.4 |
236.2 |
| H13 |
C17 |
C11 |
O03 |
214.0 |
206.9 |
| H13 |
C17 |
C11 |
H7 |
87.2 |
80.6 |
| H14 |
C18 |
C17 |
H13 |
228.5 |
359.8 |
| C17 |
C18 |
H14 |
H15 |
124.2 |
236.3 |
| H14 |
C18 |
C09 |
H6 |
45.7 |
279.0 |
| H15 |
C18 |
C17 |
H13 |
351.4 |
236.2 |
| C17 |
C18 |
H15 |
H14 |
235.8 |
123.7 |
| H15 |
C18 |
C09 |
H6 |
282.8 |
43.4 |
| N01 |
C20 |
H16 |
C26 |
233.3 |
240.0 |
| N01 |
C20 |
H16 |
H17 |
116.6 |
120.0 |
| H16 |
C20 |
C26 |
F01 |
36.4 |
300.0 |
| C26 |
C20 |
H16 |
H17 |
243.4 |
240.0 |
| N01 |
C20 |
H17 |
C26 |
126.7 |
120.1 |
| N01 |
C20 |
H17 |
H16 |
243.4 |
240.1 |
| H17 |
C20 |
C26 |
F01 |
278.5 |
180.0 |
| C26 |
C20 |
H17 |
H16 |
116.6 |
120.0 |
| H19 |
C22 |
C21 |
H18 |
0.5 |
360.0 |
| H20 |
C23 |
C24 |
C25 |
180.2 |
180.0 |
| H20 |
C23 |
C24 |
H21 |
0.2 |
0.3 |
| H20 |
C23 |
C22 |
H19 |
359.7 |
359.8 |
| C23 |
C24 |
H21 |
C25 |
180.0 |
179.7 |
| H21 |
C24 |
C23 |
H20 |
0.2 |
0.3 |
| H21 |
C24 |
C25 |
H22 |
359.6 |
359.7 |
| H22 |
C25 |
C24 |
H21 |
359.6 |
359.7 |