PDB Chemical Component OB5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OB5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O02	C14	1.359	1.358
C14	C13	1.341	1.389
C14	C15	1.348	1.389
C13	C12	1.342	1.378
C12	C10	1.347	1.399
C15	C16	1.346	1.378
C16	C10	1.352	1.398
C10	C08	1.357	1.473
O01	C02	1.358	1.358
C01	C02	1.342	1.390
C01	C06	1.340	1.377
C02	C03	1.338	1.389
C08	C07	1.357	1.357
C08	C09	1.535	1.531
C06	C05	1.346	1.398
C03	C04	1.339	1.378
C05	C04	1.347	1.398
C05	C07	1.346	1.473
C07	C11	1.523	1.531
C09	O03	1.403	1.467
C09	C18	1.538	1.561
O03	C11	1.410	1.464
C11	C17	1.532	1.561
C20	C26	1.536	1.530
C20	N01	1.504	1.465
C18	C17	1.542	1.559
C18	S01	1.857	1.814
O05	S01	1.458	1.421
N01	S01	1.694	1.656
N01	C19	1.284	1.400
S01	O04	1.461	1.421
C21	C19	1.350	1.389
C21	C22	1.343	1.381
C19	C25	1.350	1.388
C22	C23	1.346	1.387
C25	C24	1.343	1.381
C23	C24	1.345	1.388
C23	O06	1.375	1.359
O06	C27	1.409	1.430
C01	H1	1.080	1.080
C03	H2	1.080	1.080
C04	H3	1.080	1.080
C06	H4	1.080	1.081
O01	H5	0.950	0.968
C09	H6	1.100	1.091
C11	H7	1.100	1.090
C12	H8	1.080	1.080
C13	H9	1.080	1.080
C15	H10	1.080	1.081
C16	H11	1.080	1.080
O02	H12	0.950	0.968
C17	H13	1.100	1.090
C17	H14	1.100	1.090
C18	H15	1.100	1.090
C20	H16	1.100	1.090
C20	H17	1.100	1.091
C21	H18	1.080	1.080
C22	H19	1.080	1.080
C24	H20	1.080	1.080
C25	H21	1.080	1.079
C26	H22	1.100	1.091
C26	H23	1.099	1.090
C26	H24	1.100	1.090
C27	H25	1.100	1.089
C27	H26	1.100	1.090
C27	H27	1.100	1.090

Bond Angles for OB5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C14	C13	H9	119.4	119.9
C14	C15	C16	121.3	120.1
C14	C15	H10	119.3	120.0
C13	C12	H8	118.6	120.1
C16	C15	H10	119.4	119.9
C15	C16	H11	118.9	120.1
C02	C01	C06	121.4	120.1
C01	C02	C03	116.9	120.1
C02	C01	H1	119.3	119.9
C01	C06	C05	122.2	119.9
C06	C01	H1	119.3	120.0
C01	C06	H4	118.9	120.1
C02	C03	C04	121.6	120.2
C02	C03	H2	119.2	119.9
C08	C07	C11	104.1	106.0
C08	C09	O03	103.1	100.7
C08	C09	C18	109.0	105.1
C08	C09	H6	113.7	115.6
C06	C05	C07	123.4	120.1
C04	C03	H2	119.2	119.9
C03	C04	H3	118.9	120.1
C05	C04	H3	119.0	120.1
C05	C07	C11	119.7	127.0
C07	C11	C17	103.4	105.1
C07	C11	H7	114.1	115.6
C18	C09	O03	99.8	101.1
C09	O03	C11	96.0	97.2
O03	C09	H6	116.1	116.0
C09	C18	C17	100.6	101.7
C09	C18	S01	114.9	110.9
C18	C09	H6	113.7	116.1
C09	C18	H15	110.4	110.9
O03	C11	H7	116.2	116.6
C17	C11	H7	114.0	115.6
C11	C17	H13	112.0	110.9
C11	C17	H14	112.0	111.0
C26	C20	H16	108.4	109.5
C26	C20	H17	108.4	109.5
C20	C26	H22	109.5	109.5
C20	C26	H23	109.5	109.5
C20	C26	H24	109.5	109.5
C18	C17	H13	112.0	111.1
C18	C17	H14	112.0	110.8
C18	S01	O04	92.5	110.5
S01	C18	H15	106.7	110.9
N01	S01	O04	117.6	104.3
N01	C19	C25	119.8	120.0
C21	C19	C25	114.0	120.0
C21	C22	C23	122.9	120.1
C22	C21	H18	118.7	120.1
C21	C22	H19	118.6	120.0
C19	C25	C24	123.5	120.0
C19	C25	H21	118.3	120.1
C22	C23	C24	114.9	120.0
C22	C23	O06	119.4	120.0
C23	C22	H19	118.5	119.9
C25	C24	H20	119.0	120.0
C24	C23	O06	125.7	120.0
C23	C24	H20	119.0	119.9
C23	O06	C27	118.3	117.0
O06	C27	H25	109.5	109.5
O06	C27	H26	109.5	109.4
O06	C27	H27	109.5	109.4
H13	C17	H14	109.4	110.8
H16	C20	H17	109.5	109.4
H22	C26	H23	109.5	109.5
H22	C26	H24	109.4	109.4
H23	C26	H24	109.5	109.5
H25	C27	H26	109.4	109.5
H25	C27	H27	109.5	109.5
H26	C27	H27	109.5	109.5

Torsion Angles for OB5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O02	C14	C13	H9	360.0	360.0
O02	C14	C15	H10	359.9	360.0
C14	C13	C12	H8	179.6	180.0
C15	C14	C13	H9	180.0	180.0
C16	C15	C14	H10	180.0	179.7
C14	C15	C16	H11	180.4	180.0
C14	C15	C16	H10	180.0	180.3
C10	C08	C07	C11	181.0	180.2
C10	C08	C09	O03	146.4	147.9
C10	C08	C09	C18	251.8	252.6
C10	C08	C09	H6	19.8	22.1
O01	C02	C01	H1	359.7	359.7
O01	C02	C03	H2	0.2	0.0
C02	C01	C06	C05	359.4	360.0
C06	C01	C02	H1	180.0	180.3
C02	C01	C06	H4	179.4	180.0
C01	C02	C03	C04	0.1	360.0
C01	C02	C03	H2	180.1	180.0
C06	C01	C02	C03	359.8	0.0
C02	C01	C06	H1	180.0	179.7
C01	C06	C05	C07	178.2	180.0
C03	C02	C01	C06	359.8	0.0
C03	C02	C01	H1	179.8	179.7
C04	C03	C02	H2	180.0	180.0
C02	C03	C04	H3	180.8	179.9
C05	C07	C08	C11	183.4	179.7
C08	C07	C11	C17	284.6	287.2
C08	C07	C11	H7	160.2	158.4
C09	C08	C07	C11	359.0	0.3
C18	C09	C08	O03	105.4	104.7
C08	C09	O03	C11	51.2	50.4
O03	C09	C08	H6	126.6	125.8
C08	C09	C18	C17	296.2	290.1
C08	C09	C18	S01	173.4	172.2
C18	C09	C08	H6	232.0	230.5
C08	C09	C18	H15	52.7	48.5
C05	C06	C01	H1	179.4	180.3
C01	C06	C05	H4	180.0	180.0
C06	C05	C04	H3	178.5	180.1
C06	C05	C07	C11	225.1	64.9
C02	C03	C04	H2	180.0	180.0
C05	C04	C03	H3	180.0	180.1
C01	C06	C05	C04	1.4	0.0
C05	C04	C03	H2	180.8	180.0
C03	C04	C05	H3	180.0	179.9
C08	C07	C05	C11	176.2	180.4
C07	C05	C04	H3	1.6	0.1
C05	C07	C11	C17	101.9	107.5
C05	C07	C11	H7	337.5	338.7
C09	O03	C11	C07	308.1	309.7
O03	C11	C07	H7	233.3	233.4
C17	C11	C07	H7	124.4	128.8
C07	C11	C17	H13	198.6	187.8
C07	C11	C17	H14	321.9	311.4
C08	C09	O03	C18	112.3	107.9
C08	C09	O03	H6	234.9	234.4
O03	C09	C18	C17	43.9	34.5
O03	C09	C18	S01	281.1	276.6
C18	C09	O03	H6	122.6	126.5
O03	C09	C18	H15	160.4	152.9
C09	O03	C11	H7	182.8	183.7
C08	C09	C18	O03	252.4	255.6
C08	C09	C18	H6	128.0	129.2
C18	C09	O03	C11	298.9	302.5
O03	C09	C18	H6	235.6	233.6
C09	C18	C17	H13	232.0	242.0
C09	C18	C17	H14	108.7	118.4
C09	C18	S01	O04	161.1	292.5
S01	C18	C09	H15	120.7	123.7
C07	C11	O03	H7	125.4	126.0
C11	O03	C09	H6	176.3	176.0
C17	C11	O03	H7	233.2	233.9
O03	C11	C17	H13	91.2	83.3
O03	C11	C17	H14	214.6	206.9
C07	C11	C17	H7	235.5	231.2
C09	O03	C11	C17	55.9	57.6
C09	C18	C17	C11	350.4	0.3
O03	C11	C17	H7	128.2	126.7
C18	C17	C11	H13	241.7	241.7
C18	C17	C11	H14	118.3	118.0
H13	C17	C11	H14	236.7	236.4
H16	C20	C26	H17	241.3	119.9
H22	C26	C20	H23	240.0	239.9
H22	C26	C20	H24	120.0	119.9
H23	C26	C20	H24	240.0	240.0
C20	N01	C19	C25	229.3	335.0
C17	C18	C09	O03	43.9	34.5
C09	C18	C17	S01	236.5	242.0
C17	C18	C09	H6	168.2	160.9
C09	C18	C17	H15	116.5	118.2
C18	C17	C11	H7	204.7	198.2
C11	C17	C18	H13	118.3	118.2
C11	C17	C18	H14	241.7	241.9
H13	C17	C18	H14	123.3	123.6
S01	C18	C09	O03	281.1	276.6
C09	C18	S01	C17	115.4	112.2
S01	C18	C09	H6	45.4	43.0
C09	C18	S01	H15	237.3	236.3
S01	C18	C17	H13	355.5	0.0
S01	C18	C17	H14	232.2	236.4
N01	S01	C18	O04	239.9	248.4
O05	S01	C18	H15	44.5	193.0
C18	S01	N01	O04	102.6	116.0
N01	S01	C18	H15	163.7	304.7
C19	N01	S01	O04	345.5	328.2
C21	C19	N01	C25	180.3	180.3
N01	C19	C25	C24	180.1	179.8
N01	C19	C25	H21	0.1	0.0
O04	S01	C18	H15	283.8	56.3
N01	C19	C21	C25	179.7	179.7
C21	C19	C25	C24	359.8	359.5
C21	C19	C25	H21	179.8	179.8
C22	C21	C19	C25	0.0	0.2
C21	C22	C23	C24	359.9	360.0
C21	C22	C23	O06	180.0	180.0
C23	C22	C21	H19	180.0	180.0
C19	C25	C24	H20	180.2	180.3
C23	C22	C21	H18	180.1	180.0
C21	C22	C23	H19	180.0	180.0
C24	C23	C22	O06	179.9	180.0
C22	C23	C24	H20	179.9	179.9
C22	C23	O06	C27	77.0	180.0
C19	C25	C24	H21	180.0	180.3
C25	C24	C23	O06	179.9	179.7
C23	C24	C25	H20	180.0	180.2
C19	C25	C24	C23	0.2	0.5
C22	C23	C24	O06	180.1	180.0
C24	C23	C22	H19	179.9	180.0
C25	C24	C23	H20	180.0	179.8
C24	C23	O06	C27	257.0	0.0
C22	C23	O06	C24	179.9	180.0
O06	C23	C22	H19	360.0	0.0
O06	C23	C24	H20	359.9	359.9
C23	O06	C27	H25	180.0	180.0
C23	O06	C27	H26	300.0	300.0
C23	O06	C27	H27	60.0	60.0
H25	C27	O06	H26	240.0	239.9
H25	C27	O06	H27	120.0	120.0
H26	C27	O06	H27	240.0	240.1
C02	C01	H1	C06	180.0	180.3
H1	C01	C02	C03	179.8	179.7
H1	C01	C06	C05	179.4	180.3
H1	C01	C06	H4	359.4	0.3
C02	C03	H2	C04	180.0	180.0
H2	C03	C04	H3	0.8	359.9
H3	C04	C03	H2	0.8	359.9
C01	C06	H4	C05	180.0	180.0
H4	C06	C01	H1	359.4	0.3
H4	C06	C05	C07	358.3	360.0
C08	C09	H6	O03	119.4	117.6
C08	C09	H6	C18	234.5	236.1
C18	C09	H6	O03	245.0	241.5
H6	C09	O03	C11	176.3	176.0
H6	C09	C18	C17	168.2	160.9
H6	C09	C18	S01	45.4	43.0
H6	C09	C18	H15	284.7	279.3
C07	C11	H7	C17	118.5	123.4
H7	C11	C17	H13	323.0	316.6
H7	C11	C17	H14	86.4	80.2
H9	C13	C12	H8	359.7	0.1
C14	C15	H10	C16	180.0	179.7
H10	C15	C16	H11	0.4	359.7
H11	C16	C15	H10	0.4	359.7
H13	C17	C11	H7	323.0	316.6
C11	C17	H13	H14	124.7	123.7
C18	C17	H13	H14	235.3	236.4
H14	C17	C11	H7	86.4	80.2
C11	C17	H14	H13	235.3	236.3
C18	C17	H14	H13	124.7	123.8
H15	C18	C09	O03	160.4	152.9
C09	C18	H15	C17	249.7	247.5
C09	C18	H15	S01	125.5	123.7
H15	C18	C09	H6	284.7	279.3
H15	C18	C17	H13	115.5	123.9
H15	C18	C17	H14	352.1	0.2
H15	C18	S01	O04	283.8	56.3
C26	C20	H16	H17	118.0	240.0
H16	C20	C26	H22	300.6	175.1
H16	C20	C26	H23	60.7	295.1
H16	C20	C26	H24	180.7	55.1
C26	C20	H17	H16	242.0	119.9
H17	C20	C26	H22	59.3	55.1
H17	C20	C26	H23	179.4	175.2
H17	C20	C26	H24	299.3	295.2
H18	C21	C19	C25	180.0	180.2
H18	C21	C22	C23	180.1	180.0
H18	C21	C22	H19	0.1	0.0
C21	C22	H19	C23	180.0	180.0
H19	C22	C21	H18	0.1	0.0
H19	C22	C23	C24	179.9	180.0
H19	C22	C23	O06	360.0	0.0
H20	C24	C23	O06	359.9	359.9
C19	C25	H21	C24	180.0	179.7
H21	C25	C24	H20	0.2	0.1
H22	C26	C20	H16	300.6	175.1
H22	C26	C20	H17	59.3	55.1
C20	C26	H22	H23	120.0	120.1
C20	C26	H22	H24	240.0	240.0
H23	C26	H22	H24	120.0	120.0
H23	C26	C20	H16	60.7	295.1
H23	C26	C20	H17	179.4	175.2
C20	C26	H23	H22	240.0	240.0
C20	C26	H23	H24	120.0	120.0
H22	C26	H23	H24	240.0	240.0
H24	C26	C20	H16	180.7	55.1
H24	C26	C20	H17	299.3	295.2
C20	C26	H24	H22	120.0	120.0
C20	C26	H24	H23	240.0	240.0
H22	C26	H24	H23	120.0	120.0
O06	C27	H25	H26	120.0	120.0
O06	C27	H25	H27	240.0	240.0
H26	C27	H25	H27	120.0	120.0
O06	C27	H26	H25	240.0	239.9
O06	C27	H26	H27	120.0	119.9
H25	C27	H26	H27	240.0	240.0
O06	C27	H27	H25	120.0	120.0
O06	C27	H27	H26	240.0	240.1
H25	C27	H27	H26	120.0	120.1