PDB Chemical Component OAK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OAK

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C8	C9	1.391	1.396
C9	C10	1.394	1.380
C9	H9	1.080	1.081
C10	C11	1.392	1.384
C10	H10	1.080	1.079
C12	C11	1.397	1.384
C11	H11	1.080	1.080
C13	C12	1.400	1.380
C12	H12	1.080	1.079
C8	C13	1.395	1.396
C13	H13	1.080	1.080
C7	C8	1.533	1.478
N1	C7	1.331	1.349
C7	O7	1.229	1.216
C1	N1	1.487	1.465
N1	HN1	1.000	0.970
C2	C1	1.538	1.530
C1	O5	1.470	1.429
C1	H1	1.100	1.090
C5	O5	1.430	1.429
C4	C5	1.549	1.531
C5	C6	1.540	1.530
C5	H5	1.100	1.091
O6	C6	1.429	1.429
C6	H61	1.100	1.090
C6	H62	1.099	1.090
O6	HO6	0.950	0.967
O4	C4	1.420	1.429
C3	C4	1.538	1.532
C4	H4	1.100	1.090
O4	HO4	0.950	0.967
O3	C3	1.428	1.428
C3	C2	1.538	1.532
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
O2	C2	1.438	1.429
C2	H2	1.100	1.090
O2	HO2	0.950	0.967

Bond Angles for OAK

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C8	C9	H9	119.8	120.0
C10	C9	H9	119.8	120.1
C9	C10	C11	120.2	120.1
C9	C10	H10	119.9	119.9
C11	C10	H10	119.9	120.0
C10	C11	H11	120.2	119.9
C12	C11	H11	120.2	119.8
C13	C12	H12	119.9	119.9
C8	C13	H13	120.0	120.1
C1	N1	HN1	120.2	120.1
C2	C1	H1	108.0	109.5
O5	C1	H1	107.7	109.5
C4	C5	H5	106.0	109.4
C6	C5	H5	108.8	109.5
C5	C6	H61	109.4	109.5
C5	C6	H62	109.3	109.5
O6	C6	H61	109.4	109.5
O6	C6	H62	109.3	109.5
H61	C6	H62	109.7	109.4
O4	C4	H4	110.6	109.5
C3	C4	H4	108.0	109.5
O3	C3	C2	109.7	109.6
O3	C3	H3	109.6	109.7
C2	C3	H3	108.6	109.5
C3	C2	H2	108.6	109.4
O2	C2	H2	107.7	109.6

Torsion Angles for OAK

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	C9	C8	H9	180.0	179.7
C8	C9	C10	H10	180.0	180.3
C8	C9	C10	H9	180.0	180.3
C11	C10	C9	H10	180.0	180.1
C9	C10	C11	H11	180.1	180.0
H9	C9	C10	C11	179.9	180.0
H9	C9	C10	H10	360.0	359.9
C11	C10	C9	H9	179.9	180.0
C9	C10	C11	H10	180.0	179.9
C12	C11	C10	H11	180.0	180.0
H10	C10	C9	H9	360.0	359.9
C9	C10	H10	C11	180.0	180.1
H10	C10	C11	H11	0.1	0.1
C12	C11	C10	H10	180.1	180.1
C10	C11	C12	H11	180.0	180.0
H11	C11	C10	H10	0.1	0.1
C13	C12	C11	H11	179.9	180.0
H12	C12	C11	H11	359.9	0.0
C13	C8	C9	H9	180.0	179.7
C8	C13	C12	H12	180.0	179.6
H13	C13	C12	H12	0.0	360.0
C7	C8	C9	H9	0.3	0.3
C7	C8	C13	H13	359.7	359.6
C2	C1	N1	HN1	313.7	325.1
O5	C1	C2	H1	118.4	120.0
O5	C1	N1	HN1	76.5	85.1
C2	C1	O5	H1	241.4	240.0
H1	C1	N1	HN1	195.0	205.1
C5	O5	C1	H1	57.5	58.9
C6	C5	C4	H5	119.3	120.0
C4	C5	C6	H61	173.4	305.0
C4	C5	C6	H62	293.5	65.0
C4	C5	C6	H5	242.2	240.0
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	119.9	120.0
H61	C6	C5	H62	239.9	240.0
H5	C5	C6	H61	291.2	65.0
H5	C5	C6	H62	51.3	184.9
O6	C6	C5	H5	171.2	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.1	240.0
H61	C6	O6	H62	120.1	120.0
H61	C6	C5	H5	291.2	65.0
C5	C6	H61	H62	119.9	120.0
O6	C6	H61	H62	240.1	240.0
H62	C6	C5	H5	51.3	184.9
C5	C6	H62	H61	240.1	240.0
O6	C6	H62	H61	119.9	120.0
HO6	O6	C6	H61	163.5	60.0
HO6	O6	C6	H62	43.4	300.1
O4	C4	C5	H5	304.5	302.4
C3	C4	O4	H4	118.7	120.1
C3	C4	C5	H5	65.6	62.4
O4	C4	C3	H4	239.7	239.8
H4	C4	C5	H5	184.2	182.3
HO4	O4	C4	H4	132.7	300.1
O3	C3	C4	H4	55.4	56.9
C2	C3	O3	H3	240.9	239.8
O3	C3	C2	H2	307.2	303.1
C3	C2	C1	H1	296.0	297.6
C2	C3	C4	H4	294.2	297.0
O3	C3	C2	H3	119.7	120.3
O2	C2	C3	H2	118.3	120.1
H3	C3	C4	H4	175.2	177.2
O3	C3	H3	C2	240.2	239.7
H3	C3	C2	H2	187.5	182.8
HO3	O3	C3	C2	204.7	299.6
HO3	O3	C3	H3	323.8	59.8
O2	C2	C1	H1	58.8	57.5
O2	C2	C3	H3	305.8	302.9
C3	C2	O2	H2	241.2	239.9
H2	C2	C1	H1	177.2	177.7
H2	C2	C3	H3	187.5	182.8
HO2	O2	C2	H2	246.5	300.1