PDB Chemical Component OAH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OAH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2P |
P |
1.610 |
1.481 |
| O3P |
P |
1.479 |
1.609 |
| P |
O5' |
1.610 |
1.610 |
| P |
O1P |
1.610 |
1.610 |
| C2 |
N1 |
1.322 |
1.320 |
| N1 |
C6 |
1.340 |
1.329 |
| C2 |
N3 |
1.321 |
1.316 |
| C2 |
H2 |
1.080 |
1.081 |
| N3 |
C4 |
1.341 |
1.329 |
| C4 |
N9 |
1.330 |
1.372 |
| C4 |
C5 |
1.388 |
1.406 |
| C6 |
C5 |
1.390 |
1.406 |
| C5 |
N7 |
1.329 |
1.355 |
| C6 |
N6 |
1.330 |
1.384 |
| N6 |
HN6 |
1.000 |
0.970 |
| N6 |
HN6A |
1.000 |
0.969 |
| C8 |
N7 |
1.331 |
1.301 |
| N9 |
C8 |
1.332 |
1.363 |
| C8 |
H8 |
1.081 |
1.080 |
| C1' |
N9 |
1.481 |
1.465 |
| O4' |
C1' |
1.435 |
1.437 |
| C1' |
C2' |
1.527 |
1.541 |
| C1' |
H1' |
1.100 |
1.090 |
| O1P |
HO1P |
0.950 |
0.966 |
| C3' |
C2' |
1.528 |
1.548 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.100 |
1.090 |
| C4' |
C3' |
1.532 |
1.550 |
| C3' |
O3' |
1.430 |
1.429 |
| C3' |
H3' |
1.100 |
1.089 |
| O3' |
HO3' |
0.950 |
0.967 |
| O3P |
HO3P |
0.950 |
0.967 |
| C5' |
C4' |
1.530 |
1.531 |
| C4' |
O4' |
1.439 |
1.444 |
| C4' |
H4' |
1.100 |
1.090 |
| O5' |
C5' |
1.429 |
1.429 |
| C5' |
H5' |
1.100 |
1.091 |
| C5' |
H5'A |
1.100 |
1.090 |
Bond Angles for OAH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2P |
P |
O5' |
106.1 |
109.5 |
| O3P |
P |
O5' |
112.7 |
109.5 |
| O1P |
P |
O5' |
105.7 |
109.4 |
| P |
O5' |
C5' |
119.9 |
123.0 |
| P |
O1P |
HO1P |
109.5 |
114.0 |
| C2 |
N1 |
C6 |
121.0 |
121.1 |
| N1 |
C6 |
C5 |
119.0 |
118.5 |
| N1 |
C6 |
N6 |
120.5 |
120.8 |
| N3 |
C2 |
H2 |
119.2 |
118.8 |
| C2 |
N3 |
C4 |
120.5 |
120.7 |
| N3 |
C4 |
N9 |
133.4 |
135.0 |
| N3 |
C4 |
C5 |
119.5 |
119.0 |
| C5 |
C4 |
N9 |
107.1 |
106.0 |
| C4 |
N9 |
C8 |
108.0 |
107.5 |
| C4 |
C5 |
N7 |
107.4 |
107.2 |
| C6 |
C5 |
N7 |
134.3 |
134.7 |
| C6 |
N6 |
HN6 |
109.5 |
119.9 |
| C6 |
N6 |
HN6A |
109.5 |
120.0 |
| HN6 |
N6 |
HN6A |
109.4 |
120.0 |
| N9 |
C8 |
H8 |
125.2 |
125.0 |
| O4' |
C1' |
H1' |
115.1 |
110.0 |
| C2' |
C1' |
H1' |
112.5 |
109.9 |
| C1' |
C2' |
H2' |
113.6 |
110.5 |
| C1' |
C2' |
H2'A |
113.6 |
110.5 |
| C3' |
C2' |
H2' |
113.6 |
110.5 |
| C3' |
C2' |
H2'A |
113.6 |
110.6 |
| H2' |
C2' |
H2'A |
105.1 |
110.4 |
| C4' |
C3' |
H3' |
113.6 |
111.0 |
| O3' |
C3' |
H3' |
106.5 |
110.8 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C5' |
C4' |
H4' |
108.2 |
110.7 |
| O4' |
C4' |
H4' |
111.0 |
110.6 |
| O5' |
C5' |
H5' |
108.9 |
109.5 |
| O5' |
C5' |
H5'A |
108.9 |
109.5 |
| H5' |
C5' |
H5'A |
110.0 |
109.4 |
Torsion Angles for OAH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3P |
P |
O2P |
O5' |
236.0 |
120.0 |
| O1P |
P |
O2P |
O5' |
112.0 |
240.1 |
| O2P |
P |
O5' |
C5' |
65.8 |
305.0 |
| O2P |
P |
O1P |
HO1P |
0.0 |
180.0 |
| O2P |
P |
O3P |
O5' |
120.3 |
240.0 |
| O1P |
P |
O3P |
O5' |
240.4 |
120.0 |
| O3P |
P |
O5' |
C5' |
190.0 |
185.0 |
| O3P |
P |
O1P |
HO1P |
235.9 |
300.0 |
| O5' |
P |
O1P |
HO1P |
112.3 |
60.1 |
| P |
O5' |
C5' |
H5' |
55.4 |
60.0 |
| P |
O5' |
C5' |
H5'A |
295.4 |
300.0 |
| O2P |
P |
O1P |
O5' |
247.7 |
120.0 |
| O3P |
P |
O1P |
O5' |
123.6 |
240.0 |
| O1P |
P |
O5' |
C5' |
313.6 |
65.0 |
| C2 |
N1 |
C6 |
C5 |
0.1 |
0.0 |
| C2 |
N1 |
C6 |
N6 |
180.8 |
180.0 |
| N1 |
C6 |
C5 |
N7 |
180.0 |
180.0 |
| N1 |
C6 |
N6 |
HN6 |
0.0 |
0.0 |
| N1 |
C6 |
N6 |
HN6A |
120.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
360.0 |
0.0 |
| C2 |
N3 |
C4 |
N9 |
179.8 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
360.0 |
0.0 |
| H2 |
C2 |
N1 |
C6 |
180.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
180.0 |
180.0 |
| C5 |
C4 |
N3 |
N9 |
180.2 |
180.1 |
| N3 |
C4 |
N9 |
C8 |
179.9 |
180.0 |
| N3 |
C4 |
C5 |
N7 |
180.0 |
180.0 |
| N3 |
C4 |
N9 |
C5 |
180.2 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
0.1 |
0.0 |
| C4 |
N9 |
C8 |
H8 |
180.3 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
359.8 |
360.0 |
| N3 |
C4 |
C5 |
N9 |
179.8 |
180.0 |
| C5 |
C4 |
N9 |
C8 |
359.7 |
360.0 |
| C6 |
C5 |
C4 |
N7 |
180.1 |
180.0 |
| N1 |
C6 |
C5 |
N6 |
180.6 |
180.0 |
| C6 |
C5 |
C4 |
N9 |
180.3 |
180.0 |
| C4 |
C5 |
C6 |
N7 |
179.8 |
180.0 |
| N7 |
C5 |
C4 |
N9 |
0.1 |
0.0 |
| N1 |
C6 |
N6 |
C5 |
179.4 |
180.0 |
| N6 |
C6 |
C5 |
N7 |
359.4 |
0.1 |
| HN6 |
N6 |
C6 |
HN6A |
240.0 |
180.0 |
| C6 |
N6 |
HN6 |
HN6A |
120.0 |
180.0 |
| C6 |
N6 |
HN6A |
HN6 |
240.0 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
0.3 |
0.0 |
| C1' |
N9 |
C8 |
H8 |
1.2 |
0.0 |
| C2' |
C1' |
O4' |
H1' |
121.7 |
119.5 |
| O4' |
C1' |
C2' |
H2' |
69.5 |
120.8 |
| O4' |
C1' |
C2' |
H2'A |
189.5 |
243.3 |
| O4' |
C1' |
C2' |
H1' |
236.5 |
240.5 |
| C3' |
C2' |
C1' |
H2' |
240.0 |
241.3 |
| C3' |
C2' |
C1' |
H2'A |
120.0 |
118.8 |
| H2' |
C2' |
C1' |
H2'A |
240.0 |
237.5 |
| H1' |
C1' |
C2' |
H2' |
193.0 |
240.3 |
| H1' |
C1' |
C2' |
H2'A |
313.0 |
2.8 |
| HO1P |
O1P |
P |
O5' |
112.3 |
60.1 |
| C3' |
C2' |
C1' |
H1' |
73.0 |
121.6 |
| C1' |
C2' |
C3' |
H2' |
120.0 |
118.7 |
| C1' |
C2' |
C3' |
H2'A |
240.0 |
241.3 |
| H2' |
C2' |
C3' |
H2'A |
120.0 |
122.6 |
| H2' |
C2' |
C1' |
H1' |
193.0 |
240.3 |
| C1' |
C2' |
H2' |
H2'A |
124.7 |
122.5 |
| C3' |
C2' |
H2' |
H2'A |
235.3 |
237.3 |
| H2'A |
C2' |
C1' |
H1' |
313.0 |
2.8 |
| C1' |
C2' |
H2'A |
H2' |
235.3 |
237.5 |
| C3' |
C2' |
H2'A |
H2' |
124.7 |
122.6 |
| C4' |
C3' |
C2' |
H2' |
275.7 |
262.2 |
| C4' |
C3' |
C2' |
H2'A |
155.7 |
139.6 |
| O3' |
C3' |
C4' |
H3' |
240.7 |
236.4 |
| C4' |
C3' |
O3' |
HO3' |
66.7 |
185.9 |
| O3' |
C3' |
C2' |
H2' |
158.1 |
144.0 |
| O3' |
C3' |
C2' |
H2'A |
38.1 |
21.4 |
| C4' |
C3' |
O3' |
H3' |
123.5 |
123.7 |
| H3' |
C3' |
C2' |
H2' |
38.8 |
20.4 |
| H3' |
C3' |
C2' |
H2'A |
278.8 |
257.9 |
| H3' |
C3' |
O3' |
HO3' |
303.1 |
62.2 |
| HO3' |
O3' |
C3' |
H3' |
303.1 |
62.2 |
| HO3P |
O3P |
P |
O5' |
239.7 |
180.0 |
| P |
O5' |
C5' |
C4' |
175.4 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
108.8 |
86.3 |
| O4' |
C4' |
C5' |
H4' |
121.6 |
123.0 |
| C4' |
O4' |
C1' |
H1' |
284.7 |
213.9 |
| O4' |
C4' |
C3' |
H3' |
227.5 |
204.7 |
| C5' |
C4' |
O4' |
H4' |
240.1 |
237.0 |
| H4' |
C4' |
C3' |
H3' |
348.9 |
323.3 |
| O5' |
C5' |
C4' |
H4' |
59.8 |
308.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
179.8 |
68.0 |
| O5' |
C5' |
H5' |
H5'A |
240.6 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
299.8 |
187.9 |
| O5' |
C5' |
H5'A |
H5' |
119.4 |
120.0 |