PDB Chemical Component OAG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for OAG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C10 C1 1.541 1.507
C1 N1 1.453 1.465
C1 H1 1.100 1.090
C1 H1A 1.099 1.090
N1 C1' 1.312 1.398
N1 HN1 1.000 0.971
C11 CL2 1.722 1.737
CL5 C5' 1.753 1.737
C4A C9 1.413 1.399
C9 C10 1.399 1.370
C9 H9 1.080 1.080
C6' C1' 1.381 1.388
C1' C11 1.365 1.390
C2' N1' 1.384 1.319
N1' C8A 1.340 1.341
C7' C10 1.365 1.390
C11 C3' 1.388 1.382
C5' C12 1.390 1.383
C12 C3' 1.407 1.383
C12 H12 1.080 1.080
N2' C2' 1.346 1.381
C2' N3' 1.320 1.331
N2' HN2' 1.000 0.970
N2' HN2A 1.000 0.970
C3' H3' 1.080 1.079
N3' C4' 1.347 1.326
C4' C4A 1.392 1.417
C4' N4' 1.320 1.377
N4' HN4' 1.000 0.970
N4' HN4A 1.000 0.970
C8A C4A 1.367 1.417
C6' C5' 1.363 1.383
C6' H6' 1.080 1.080
N8' C7' 1.335 1.314
C7' H7' 1.080 1.080
C8A N8' 1.318 1.333

Bond Angles for OAG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C10 C1 H1 104.7 109.5
C10 C1 H1A 104.7 109.5
N1 C1 H1 104.6 109.5
N1 C1 H1A 104.6 109.4
C1 N1 C1' 140.9 120.0
C1 N1 HN1 100.1 120.0
H1 C1 H1A 113.8 109.4
C1' N1 HN1 100.1 120.0
N1 C1' C11 125.2 120.0
CL5 C5' C12 123.2 120.0
C4A C9 H9 120.8 121.0
C10 C9 H9 120.8 121.0
C1' C11 C3' 121.0 119.9
C2' N1' C8A 118.8 120.6
N1' C8A C4A 121.1 118.5
N1' C8A N8' 117.0 121.8
C11 C3' C12 118.9 120.0
C11 C3' H3' 120.5 120.0
C5' C12 H12 120.2 119.9
C3' C12 H12 120.2 119.9
C12 C3' H3' 120.5 120.0
N2' C2' N3' 120.5 118.5
C2' N3' C4' 120.4 121.3
HN2' N2' HN2A 109.5 120.0
N3' C4' C4A 120.1 118.2
N3' C4' N4' 116.1 120.8
N4' C4' C4A 123.7 120.9
C4' N4' HN4' 109.5 120.1
C4' N4' HN4A 109.4 120.0
HN4' N4' HN4A 109.5 119.9
N8' C7' H7' 121.3 119.2

Torsion Angles for OAG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C10 H1 240.0 120.1
N1 C1 C10 H1A 120.0 240.0
C10 C1 N1 HN1 160.9 0.0
H1 C1 C10 H1A 240.0 119.9
C10 C1 N1 H1 120.0 239.9
C10 C1 N1 H1A 240.0 120.0
H1 C1 N1 H1A 120.0 240.1
C1' N1 C1 HN1 240.0 180.0
C1 N1 C1' C11 45.1 180.0
C10 C1 H1 H1A 113.7 240.0
N1 C1 H1 H1A 246.4 119.9
H1 C1 N1 C1' 280.9 300.1
H1 C1 N1 HN1 40.9 120.1
C10 C1 H1A H1 246.3 120.0
N1 C1 H1A H1 113.6 240.0
H1A C1 N1 C1' 160.9 60.0
H1A C1 N1 HN1 280.9 240.0
C1' N1 C1 H1 280.9 300.1
C1' N1 C1 H1A 160.9 60.0
C1 N1 C1' HN1 120.0 180.0
N1 C1' C11 C3' 175.2 180.0
HN1 N1 C1 H1 40.9 120.1
HN1 N1 C1 H1A 280.9 240.0
C1 N1 HN1 C1' 213.7 180.0
HN1 N1 C1' C11 285.0 360.0
N1 C1' C11 CL2 354.7 360.0
CL5 C5' C12 H12 359.5 359.8
C10 C9 C4A H9 180.0 179.8
C9 C10 C1 H1 353.0 329.9
C9 C10 C1 H1A 113.0 210.0
C4A C9 C10 H9 180.0 180.2
C6' C1' N1 HN1 97.6 179.7
C11 C1' N1 HN1 285.0 360.0
C1' C11 C3' C12 359.5 0.0
C1' C11 C3' H3' 179.5 180.0
C2' N1' C8A C4A 2.1 360.0
C2' N1' C8A N8' 181.4 180.5
C7' C10 C1 H1 176.2 150.0
C7' C10 C1 H1A 296.2 30.0
C7' C10 C9 H9 177.6 180.0
C11 C3' C12 H12 178.8 179.9
C12 C3' C11 H3' 180.0 180.0
C3' C12 C5' H12 180.0 180.2
C5' C12 C3' H3' 178.8 179.7
CL5 C5' C12 C3' 179.5 180.0
C11 C3' C12 H3' 180.0 180.0
C5' C12 C3' H12 180.0 179.8
H12 C12 C3' H3' 358.8 359.9
N2' C2' N1' C8A 178.8 180.0
N2' C2' N3' C4' 178.1 180.0
N3' C2' N1' C8A 0.6 0.0
C2' N3' C4' C4A 4.0 0.0
C2' N3' C4' N4' 180.5 180.0
HN2' N2' C2' N3' 178.2 180.1
HN2A N2' C2' N3' 298.3 0.0
C11 C3' H3' C12 180.0 180.0
H3' C3' C12 H12 358.8 359.9
N4' C4' N3' C4A 176.4 180.0
N3' C4' N4' HN4' 0.0 0.0
N3' C4' N4' HN4A 120.0 180.0
C4' C4A C9 H9 1.1 0.2
N1' C8A C4A C4' 358.2 0.0
N3' C4' C4A N4' 176.2 180.0
C4A C4' N4' HN4' 176.3 180.0
C4A C4' N4' HN4A 296.3 360.0
N3' C4' N4' C4A 183.7 180.0
HN4' N4' C4' HN4A 240.0 180.0
HN4' N4' C4' C4A 176.3 180.0
C4' N4' HN4' HN4A 120.0 180.0
HN4A N4' C4' C4A 296.3 360.0
C4' N4' HN4A HN4' 240.0 180.0
C8A C4A C9 H9 182.4 180.2
N1' C8A C4A N8' 179.3 180.6
C6' C5' C12 H12 180.4 180.1
N1' C8A N8' C7' 182.7 180.2
N1' C8A N8' C4A 180.7 179.4
C8A N8' C7' H7' 178.2 179.5