PDB Chemical Component OAG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for OAG
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C10 |
C1 |
1.541 |
1.507 |
C1 |
N1 |
1.453 |
1.465 |
C1 |
H1 |
1.100 |
1.090 |
C1 |
H1A |
1.099 |
1.090 |
N1 |
C1' |
1.312 |
1.398 |
N1 |
HN1 |
1.000 |
0.971 |
C11 |
CL2 |
1.722 |
1.737 |
CL5 |
C5' |
1.753 |
1.737 |
C4A |
C9 |
1.413 |
1.399 |
C9 |
C10 |
1.399 |
1.370 |
C9 |
H9 |
1.080 |
1.080 |
C6' |
C1' |
1.381 |
1.388 |
C1' |
C11 |
1.365 |
1.390 |
C2' |
N1' |
1.384 |
1.319 |
N1' |
C8A |
1.340 |
1.341 |
C7' |
C10 |
1.365 |
1.390 |
C11 |
C3' |
1.388 |
1.382 |
C5' |
C12 |
1.390 |
1.383 |
C12 |
C3' |
1.407 |
1.383 |
C12 |
H12 |
1.080 |
1.080 |
N2' |
C2' |
1.346 |
1.381 |
C2' |
N3' |
1.320 |
1.331 |
N2' |
HN2' |
1.000 |
0.970 |
N2' |
HN2A |
1.000 |
0.970 |
C3' |
H3' |
1.080 |
1.079 |
N3' |
C4' |
1.347 |
1.326 |
C4' |
C4A |
1.392 |
1.417 |
C4' |
N4' |
1.320 |
1.377 |
N4' |
HN4' |
1.000 |
0.970 |
N4' |
HN4A |
1.000 |
0.970 |
C8A |
C4A |
1.367 |
1.417 |
C6' |
C5' |
1.363 |
1.383 |
C6' |
H6' |
1.080 |
1.080 |
N8' |
C7' |
1.335 |
1.314 |
C7' |
H7' |
1.080 |
1.080 |
C8A |
N8' |
1.318 |
1.333 |
Bond Angles for OAG
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C10 |
C1 |
H1 |
104.7 |
109.5 |
C10 |
C1 |
H1A |
104.7 |
109.5 |
N1 |
C1 |
H1 |
104.6 |
109.5 |
N1 |
C1 |
H1A |
104.6 |
109.4 |
C1 |
N1 |
C1' |
140.9 |
120.0 |
C1 |
N1 |
HN1 |
100.1 |
120.0 |
H1 |
C1 |
H1A |
113.8 |
109.4 |
C1' |
N1 |
HN1 |
100.1 |
120.0 |
N1 |
C1' |
C11 |
125.2 |
120.0 |
CL5 |
C5' |
C12 |
123.2 |
120.0 |
C4A |
C9 |
H9 |
120.8 |
121.0 |
C10 |
C9 |
H9 |
120.8 |
121.0 |
C1' |
C11 |
C3' |
121.0 |
119.9 |
C2' |
N1' |
C8A |
118.8 |
120.6 |
N1' |
C8A |
C4A |
121.1 |
118.5 |
N1' |
C8A |
N8' |
117.0 |
121.8 |
C11 |
C3' |
C12 |
118.9 |
120.0 |
C11 |
C3' |
H3' |
120.5 |
120.0 |
C5' |
C12 |
H12 |
120.2 |
119.9 |
C3' |
C12 |
H12 |
120.2 |
119.9 |
C12 |
C3' |
H3' |
120.5 |
120.0 |
N2' |
C2' |
N3' |
120.5 |
118.5 |
C2' |
N3' |
C4' |
120.4 |
121.3 |
HN2' |
N2' |
HN2A |
109.5 |
120.0 |
N3' |
C4' |
C4A |
120.1 |
118.2 |
N3' |
C4' |
N4' |
116.1 |
120.8 |
N4' |
C4' |
C4A |
123.7 |
120.9 |
C4' |
N4' |
HN4' |
109.5 |
120.1 |
C4' |
N4' |
HN4A |
109.4 |
120.0 |
HN4' |
N4' |
HN4A |
109.5 |
119.9 |
N8' |
C7' |
H7' |
121.3 |
119.2 |
Torsion Angles for OAG
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C1 |
C10 |
H1 |
240.0 |
120.1 |
N1 |
C1 |
C10 |
H1A |
120.0 |
240.0 |
C10 |
C1 |
N1 |
HN1 |
160.9 |
0.0 |
H1 |
C1 |
C10 |
H1A |
240.0 |
119.9 |
C10 |
C1 |
N1 |
H1 |
120.0 |
239.9 |
C10 |
C1 |
N1 |
H1A |
240.0 |
120.0 |
H1 |
C1 |
N1 |
H1A |
120.0 |
240.1 |
C1' |
N1 |
C1 |
HN1 |
240.0 |
180.0 |
C1 |
N1 |
C1' |
C11 |
45.1 |
180.0 |
C10 |
C1 |
H1 |
H1A |
113.7 |
240.0 |
N1 |
C1 |
H1 |
H1A |
246.4 |
119.9 |
H1 |
C1 |
N1 |
C1' |
280.9 |
300.1 |
H1 |
C1 |
N1 |
HN1 |
40.9 |
120.1 |
C10 |
C1 |
H1A |
H1 |
246.3 |
120.0 |
N1 |
C1 |
H1A |
H1 |
113.6 |
240.0 |
H1A |
C1 |
N1 |
C1' |
160.9 |
60.0 |
H1A |
C1 |
N1 |
HN1 |
280.9 |
240.0 |
C1' |
N1 |
C1 |
H1 |
280.9 |
300.1 |
C1' |
N1 |
C1 |
H1A |
160.9 |
60.0 |
C1 |
N1 |
C1' |
HN1 |
120.0 |
180.0 |
N1 |
C1' |
C11 |
C3' |
175.2 |
180.0 |
HN1 |
N1 |
C1 |
H1 |
40.9 |
120.1 |
HN1 |
N1 |
C1 |
H1A |
280.9 |
240.0 |
C1 |
N1 |
HN1 |
C1' |
213.7 |
180.0 |
HN1 |
N1 |
C1' |
C11 |
285.0 |
360.0 |
N1 |
C1' |
C11 |
CL2 |
354.7 |
360.0 |
CL5 |
C5' |
C12 |
H12 |
359.5 |
359.8 |
C10 |
C9 |
C4A |
H9 |
180.0 |
179.8 |
C9 |
C10 |
C1 |
H1 |
353.0 |
329.9 |
C9 |
C10 |
C1 |
H1A |
113.0 |
210.0 |
C4A |
C9 |
C10 |
H9 |
180.0 |
180.2 |
C6' |
C1' |
N1 |
HN1 |
97.6 |
179.7 |
C11 |
C1' |
N1 |
HN1 |
285.0 |
360.0 |
C1' |
C11 |
C3' |
C12 |
359.5 |
0.0 |
C1' |
C11 |
C3' |
H3' |
179.5 |
180.0 |
C2' |
N1' |
C8A |
C4A |
2.1 |
360.0 |
C2' |
N1' |
C8A |
N8' |
181.4 |
180.5 |
C7' |
C10 |
C1 |
H1 |
176.2 |
150.0 |
C7' |
C10 |
C1 |
H1A |
296.2 |
30.0 |
C7' |
C10 |
C9 |
H9 |
177.6 |
180.0 |
C11 |
C3' |
C12 |
H12 |
178.8 |
179.9 |
C12 |
C3' |
C11 |
H3' |
180.0 |
180.0 |
C3' |
C12 |
C5' |
H12 |
180.0 |
180.2 |
C5' |
C12 |
C3' |
H3' |
178.8 |
179.7 |
CL5 |
C5' |
C12 |
C3' |
179.5 |
180.0 |
C11 |
C3' |
C12 |
H3' |
180.0 |
180.0 |
C5' |
C12 |
C3' |
H12 |
180.0 |
179.8 |
H12 |
C12 |
C3' |
H3' |
358.8 |
359.9 |
N2' |
C2' |
N1' |
C8A |
178.8 |
180.0 |
N2' |
C2' |
N3' |
C4' |
178.1 |
180.0 |
N3' |
C2' |
N1' |
C8A |
0.6 |
0.0 |
C2' |
N3' |
C4' |
C4A |
4.0 |
0.0 |
C2' |
N3' |
C4' |
N4' |
180.5 |
180.0 |
HN2' |
N2' |
C2' |
N3' |
178.2 |
180.1 |
HN2A |
N2' |
C2' |
N3' |
298.3 |
0.0 |
C11 |
C3' |
H3' |
C12 |
180.0 |
180.0 |
H3' |
C3' |
C12 |
H12 |
358.8 |
359.9 |
N4' |
C4' |
N3' |
C4A |
176.4 |
180.0 |
N3' |
C4' |
N4' |
HN4' |
0.0 |
0.0 |
N3' |
C4' |
N4' |
HN4A |
120.0 |
180.0 |
C4' |
C4A |
C9 |
H9 |
1.1 |
0.2 |
N1' |
C8A |
C4A |
C4' |
358.2 |
0.0 |
N3' |
C4' |
C4A |
N4' |
176.2 |
180.0 |
C4A |
C4' |
N4' |
HN4' |
176.3 |
180.0 |
C4A |
C4' |
N4' |
HN4A |
296.3 |
360.0 |
N3' |
C4' |
N4' |
C4A |
183.7 |
180.0 |
HN4' |
N4' |
C4' |
HN4A |
240.0 |
180.0 |
HN4' |
N4' |
C4' |
C4A |
176.3 |
180.0 |
C4' |
N4' |
HN4' |
HN4A |
120.0 |
180.0 |
HN4A |
N4' |
C4' |
C4A |
296.3 |
360.0 |
C4' |
N4' |
HN4A |
HN4' |
240.0 |
180.0 |
C8A |
C4A |
C9 |
H9 |
182.4 |
180.2 |
N1' |
C8A |
C4A |
N8' |
179.3 |
180.6 |
C6' |
C5' |
C12 |
H12 |
180.4 |
180.1 |
N1' |
C8A |
N8' |
C7' |
182.7 |
180.2 |
N1' |
C8A |
N8' |
C4A |
180.7 |
179.4 |
C8A |
N8' |
C7' |
H7' |
178.2 |
179.5 |