PDB Chemical Component O96
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O96
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C4 |
1.370 |
1.347 |
| N1 |
HN1 |
1.000 |
0.970 |
| N1 |
HN1A |
1.000 |
0.970 |
| C4 |
O47 |
1.221 |
1.214 |
| C5 |
C4 |
1.532 |
1.491 |
| C5 |
C6 |
1.554 |
1.507 |
| C6 |
C39 |
1.542 |
1.529 |
| C6 |
H6 |
1.100 |
1.090 |
| N8 |
C6 |
1.459 |
1.465 |
| N8 |
C10 |
1.374 |
1.348 |
| N8 |
HN8 |
1.000 |
0.970 |
| C10 |
O38 |
1.216 |
1.217 |
| C11 |
C10 |
1.468 |
1.475 |
| C11 |
C12 |
1.398 |
1.398 |
| C12 |
H12 |
1.080 |
1.081 |
| C14 |
C12 |
1.396 |
1.376 |
| C14 |
H14 |
1.080 |
1.080 |
| C16 |
C14 |
1.413 |
1.391 |
| C17 |
C16 |
1.422 |
1.389 |
| C17 |
C18 |
1.408 |
1.379 |
| C18 |
C11 |
1.398 |
1.399 |
| CL19 |
C18 |
1.734 |
1.736 |
| C20 |
C17 |
1.516 |
1.507 |
| C20 |
F23 |
1.362 |
1.399 |
| F21 |
C20 |
1.361 |
1.399 |
| F22 |
C20 |
1.363 |
1.399 |
| O24 |
C16 |
1.368 |
1.357 |
| O24 |
C25 |
1.433 |
1.429 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.090 |
| C28 |
C25 |
1.508 |
1.507 |
| C28 |
C36 |
1.393 |
1.382 |
| N29 |
C28 |
1.365 |
1.318 |
| C30 |
N29 |
1.356 |
1.319 |
| C30 |
C32 |
1.387 |
1.382 |
| C30 |
H30 |
1.080 |
1.080 |
| C32 |
C34 |
1.393 |
1.386 |
| C32 |
H32 |
1.080 |
1.080 |
| C34 |
C36 |
1.389 |
1.387 |
| C34 |
H34 |
1.080 |
1.080 |
| C36 |
H36 |
1.080 |
1.080 |
| C39 |
C42 |
1.525 |
1.530 |
| C39 |
H39 |
1.100 |
1.091 |
| C39 |
H39A |
1.100 |
1.089 |
| C42 |
H42 |
1.100 |
1.090 |
| C42 |
H42A |
1.100 |
1.090 |
| C42 |
H42B |
1.100 |
1.090 |
| O46 |
C5 |
1.430 |
1.209 |
Bond Angles for O96
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
N1 |
HN1 |
120.0 |
120.0 |
| C4 |
N1 |
HN1A |
120.0 |
120.0 |
| N1 |
C4 |
O47 |
120.8 |
120.0 |
| HN1 |
N1 |
HN1A |
120.0 |
120.0 |
| C5 |
C4 |
O47 |
120.3 |
120.0 |
| C5 |
C6 |
C39 |
114.6 |
109.4 |
| C5 |
C6 |
H6 |
107.9 |
109.4 |
| C39 |
C6 |
H6 |
105.1 |
109.5 |
| N8 |
C6 |
C39 |
109.4 |
109.5 |
| C6 |
C39 |
C42 |
111.8 |
109.5 |
| C6 |
C39 |
H39 |
108.7 |
109.5 |
| C6 |
C39 |
H39A |
108.7 |
109.5 |
| N8 |
C6 |
H6 |
113.3 |
109.5 |
| C10 |
N8 |
HN8 |
118.2 |
120.0 |
| N8 |
C10 |
O38 |
125.3 |
120.0 |
| C11 |
C10 |
O38 |
121.1 |
120.0 |
| C11 |
C12 |
H12 |
120.4 |
120.0 |
| C14 |
C12 |
H12 |
120.3 |
120.1 |
| C16 |
C14 |
H14 |
119.7 |
119.9 |
| F21 |
C20 |
F23 |
103.3 |
109.5 |
| F22 |
C20 |
F23 |
104.8 |
109.4 |
| O24 |
C25 |
H25 |
109.7 |
109.4 |
| O24 |
C25 |
H25A |
109.7 |
109.5 |
| H25 |
C25 |
H25A |
109.2 |
109.5 |
| C28 |
C25 |
H25 |
109.7 |
109.4 |
| C28 |
C25 |
H25A |
109.7 |
109.5 |
| N29 |
C28 |
C36 |
122.4 |
120.8 |
| C28 |
C36 |
C34 |
118.5 |
119.1 |
| C28 |
C36 |
H36 |
120.8 |
120.5 |
| C32 |
C30 |
H30 |
118.7 |
119.6 |
| C30 |
C32 |
C34 |
118.7 |
119.2 |
| C30 |
C32 |
H32 |
120.7 |
120.4 |
| C34 |
C32 |
H32 |
120.6 |
120.4 |
| C32 |
C34 |
C36 |
119.8 |
118.4 |
| C32 |
C34 |
H34 |
120.1 |
120.8 |
| C36 |
C34 |
H34 |
120.1 |
120.8 |
| C34 |
C36 |
H36 |
120.8 |
120.4 |
| C42 |
C39 |
H39 |
108.7 |
109.4 |
| C42 |
C39 |
H39A |
108.7 |
109.5 |
| C39 |
C42 |
H42 |
109.5 |
109.5 |
| C39 |
C42 |
H42A |
109.5 |
109.5 |
| C39 |
C42 |
H42B |
109.5 |
109.5 |
| H39 |
C39 |
H39A |
110.3 |
109.5 |
| H42 |
C42 |
H42A |
109.5 |
109.4 |
| H42 |
C42 |
H42B |
109.5 |
109.5 |
| H42A |
C42 |
H42B |
109.5 |
109.5 |
Torsion Angles for O96
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N1 |
C4 |
HN1A |
180.0 |
180.2 |
| C5 |
C4 |
N1 |
O47 |
179.9 |
180.1 |
| C4 |
N1 |
HN1 |
HN1A |
180.0 |
179.8 |
| HN1 |
N1 |
C4 |
O47 |
0.0 |
359.9 |
| C4 |
N1 |
HN1A |
HN1 |
180.0 |
180.2 |
| HN1A |
N1 |
C4 |
O47 |
180.0 |
179.7 |
| O47 |
C4 |
N1 |
HN1 |
0.0 |
359.9 |
| O47 |
C4 |
N1 |
HN1A |
180.0 |
179.7 |
| C5 |
C4 |
N1 |
HN1 |
179.9 |
180.0 |
| C5 |
C4 |
N1 |
HN1A |
359.9 |
359.8 |
| N1 |
C4 |
C5 |
O47 |
180.1 |
179.9 |
| C6 |
C5 |
C4 |
O47 |
309.6 |
0.1 |
| C39 |
C6 |
C5 |
H6 |
243.3 |
240.0 |
| N8 |
C6 |
C5 |
C39 |
238.7 |
240.0 |
| C5 |
C6 |
C39 |
C42 |
156.6 |
175.0 |
| C5 |
C6 |
C39 |
H39 |
276.6 |
295.0 |
| C5 |
C6 |
C39 |
H39A |
36.6 |
55.0 |
| N8 |
C6 |
C5 |
H6 |
122.0 |
120.0 |
| C5 |
C6 |
C39 |
H6 |
118.3 |
119.9 |
| N8 |
C6 |
C39 |
H6 |
238.0 |
239.9 |
| C42 |
C39 |
C6 |
H39 |
240.0 |
240.1 |
| C42 |
C39 |
C6 |
H39A |
120.0 |
120.0 |
| C6 |
C39 |
C42 |
H42 |
180.0 |
300.0 |
| C6 |
C39 |
C42 |
H42A |
300.0 |
59.9 |
| C6 |
C39 |
C42 |
H42B |
60.0 |
180.0 |
| H39 |
C39 |
C6 |
H39A |
240.0 |
240.0 |
| C5 |
C6 |
H6 |
C39 |
237.3 |
240.0 |
| N8 |
C6 |
H6 |
C39 |
119.4 |
120.1 |
| H6 |
C6 |
C39 |
C42 |
38.3 |
55.1 |
| H6 |
C6 |
C39 |
H39 |
158.3 |
175.0 |
| H6 |
C6 |
C39 |
H39A |
278.3 |
295.0 |
| C5 |
C6 |
N8 |
C39 |
124.5 |
120.0 |
| C5 |
C6 |
N8 |
H6 |
241.4 |
240.1 |
| C39 |
C6 |
N8 |
H6 |
116.9 |
120.1 |
| N8 |
C6 |
C39 |
C42 |
276.4 |
295.0 |
| N8 |
C6 |
C39 |
H39 |
36.4 |
54.9 |
| N8 |
C6 |
C39 |
H39A |
156.4 |
174.9 |
| C10 |
N8 |
C6 |
C39 |
115.8 |
85.0 |
| C10 |
N8 |
C6 |
H6 |
358.9 |
324.9 |
| C11 |
C10 |
N8 |
O38 |
177.8 |
179.9 |
| HN8 |
N8 |
C6 |
C39 |
295.8 |
265.1 |
| HN8 |
N8 |
C6 |
H6 |
178.9 |
145.0 |
| HN8 |
N8 |
C10 |
O38 |
180.7 |
180.0 |
| O38 |
C10 |
N8 |
HN8 |
180.7 |
180.0 |
| C11 |
C10 |
N8 |
HN8 |
358.6 |
359.9 |
| N8 |
C10 |
C11 |
O38 |
182.1 |
180.1 |
| C12 |
C11 |
C10 |
O38 |
246.7 |
180.0 |
| C14 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C14 |
H12 |
180.0 |
180.0 |
| H14 |
C14 |
C12 |
H12 |
0.1 |
0.0 |
| C16 |
C14 |
C12 |
H12 |
180.1 |
180.0 |
| C17 |
C16 |
C14 |
H14 |
180.4 |
180.0 |
| C18 |
C11 |
C10 |
O38 |
68.0 |
359.7 |
| C18 |
C11 |
C12 |
H12 |
179.4 |
180.3 |
| F22 |
C20 |
F21 |
F23 |
249.9 |
120.0 |
| F21 |
C20 |
F22 |
F23 |
109.0 |
240.0 |
| O24 |
C16 |
C14 |
H14 |
359.5 |
360.0 |
| H25 |
C25 |
O24 |
H25A |
240.0 |
240.0 |
| C28 |
C25 |
O24 |
H25 |
240.0 |
240.1 |
| C28 |
C25 |
O24 |
H25A |
120.0 |
120.1 |
| O24 |
C25 |
H25 |
H25A |
120.3 |
120.0 |
| C28 |
C25 |
H25 |
H25A |
239.7 |
240.0 |
| O24 |
C25 |
H25A |
H25 |
239.7 |
240.0 |
| C28 |
C25 |
H25A |
H25 |
120.3 |
120.0 |
| O24 |
C25 |
C28 |
H25 |
120.0 |
120.0 |
| O24 |
C25 |
C28 |
H25A |
240.0 |
240.0 |
| H25 |
C25 |
C28 |
H25A |
120.0 |
120.0 |
| C36 |
C28 |
C25 |
H25 |
103.6 |
240.0 |
| C36 |
C28 |
C25 |
H25A |
343.6 |
120.0 |
| C32 |
C34 |
C36 |
C28 |
0.1 |
0.6 |
| C28 |
C36 |
C34 |
H34 |
180.1 |
180.2 |
| C34 |
C36 |
C28 |
H36 |
180.0 |
179.7 |
| N29 |
C28 |
C25 |
H25 |
283.1 |
60.3 |
| N29 |
C28 |
C25 |
H25A |
163.1 |
300.3 |
| N29 |
C28 |
C36 |
C34 |
359.9 |
359.4 |
| N29 |
C28 |
C36 |
H36 |
179.8 |
179.7 |
| C30 |
N29 |
C28 |
C36 |
0.1 |
0.3 |
| C34 |
C32 |
C30 |
H32 |
180.0 |
180.0 |
| C30 |
C32 |
C34 |
C36 |
0.1 |
359.7 |
| C30 |
C32 |
C34 |
H34 |
180.1 |
180.0 |
| H30 |
C30 |
C32 |
C34 |
179.8 |
180.0 |
| H30 |
C30 |
C32 |
H32 |
359.8 |
360.0 |
| C28 |
C36 |
C34 |
C32 |
0.1 |
0.6 |
| C34 |
C32 |
C30 |
H30 |
179.8 |
180.0 |
| C30 |
C32 |
C34 |
H32 |
180.0 |
180.0 |
| C36 |
C34 |
C32 |
H34 |
180.0 |
179.7 |
| C32 |
C34 |
C36 |
H36 |
180.1 |
180.2 |
| H32 |
C32 |
C30 |
H30 |
359.8 |
360.0 |
| C30 |
C32 |
H32 |
C34 |
180.0 |
180.0 |
| H32 |
C32 |
C34 |
C36 |
180.1 |
179.7 |
| H32 |
C32 |
C34 |
H34 |
0.1 |
0.0 |
| C28 |
C36 |
C34 |
H36 |
180.0 |
180.3 |
| C36 |
C34 |
C32 |
H32 |
180.1 |
179.7 |
| C32 |
C34 |
C36 |
H34 |
180.0 |
180.3 |
| H34 |
C34 |
C32 |
H32 |
0.1 |
0.0 |
| C32 |
C34 |
H34 |
C36 |
180.0 |
179.7 |
| H34 |
C34 |
C36 |
H36 |
0.1 |
359.9 |
| C28 |
C36 |
H36 |
C34 |
180.0 |
179.7 |
| H36 |
C36 |
C34 |
H34 |
0.1 |
359.9 |
| C42 |
C39 |
C6 |
H6 |
38.3 |
55.1 |
| C6 |
C39 |
C42 |
H39 |
120.0 |
120.0 |
| C6 |
C39 |
C42 |
H39A |
240.0 |
239.9 |
| H39 |
C39 |
C42 |
H39A |
120.0 |
120.0 |
| H42 |
C42 |
C39 |
H42A |
240.0 |
240.0 |
| H42 |
C42 |
C39 |
H42B |
120.0 |
120.0 |
| H42A |
C42 |
C39 |
H42B |
240.0 |
240.0 |
| H39 |
C39 |
C6 |
H6 |
158.3 |
175.0 |
| C6 |
C39 |
H39 |
C42 |
238.1 |
240.0 |
| C6 |
C39 |
H39 |
H39A |
119.1 |
120.0 |
| C42 |
C39 |
H39 |
H39A |
241.0 |
240.0 |
| H39 |
C39 |
C42 |
H42 |
60.0 |
180.0 |
| H39 |
C39 |
C42 |
H42A |
180.0 |
300.0 |
| H39 |
C39 |
C42 |
H42B |
300.0 |
60.0 |
| H39A |
C39 |
C6 |
H6 |
278.3 |
295.0 |
| C6 |
C39 |
H39A |
C42 |
121.9 |
120.0 |
| C6 |
C39 |
H39A |
H39 |
240.9 |
240.0 |
| C42 |
C39 |
H39A |
H39 |
119.1 |
119.9 |
| H39A |
C39 |
C42 |
H42 |
300.0 |
60.0 |
| H39A |
C39 |
C42 |
H42A |
60.0 |
180.0 |
| H39A |
C39 |
C42 |
H42B |
180.0 |
300.0 |
| H42 |
C42 |
C39 |
H39 |
60.0 |
180.0 |
| H42 |
C42 |
C39 |
H39A |
300.0 |
60.0 |
| C39 |
C42 |
H42 |
H42A |
120.0 |
120.0 |
| C39 |
C42 |
H42 |
H42B |
240.0 |
240.0 |
| H42A |
C42 |
H42 |
H42B |
120.0 |
120.0 |
| H42A |
C42 |
C39 |
H39 |
180.0 |
300.0 |
| H42A |
C42 |
C39 |
H39A |
60.0 |
180.0 |
| C39 |
C42 |
H42A |
H42 |
239.9 |
240.0 |
| C39 |
C42 |
H42A |
H42B |
120.0 |
120.1 |
| H42 |
C42 |
H42A |
H42B |
240.0 |
240.1 |
| H42B |
C42 |
C39 |
H39 |
300.0 |
60.0 |
| H42B |
C42 |
C39 |
H39A |
180.0 |
300.0 |
| C39 |
C42 |
H42B |
H42 |
120.0 |
120.0 |
| C39 |
C42 |
H42B |
H42A |
240.0 |
239.9 |
| H42 |
C42 |
H42B |
H42A |
120.0 |
119.9 |
| O46 |
C5 |
C4 |
O47 |
189.5 |
180.0 |
| O46 |
C5 |
C6 |
H6 |
179.7 |
225.0 |