Atom Nomenclature for O96

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O96

Atom Name (V3) Atom Name (V2)
N1 N1
C4 C4
C5 C5
C6 C6
N8 N8
C10 C10
C11 C11
C12 C12
C14 C14
C16 C16
C17 C17
C18 C18
CL19 CL19
C20 C20
F21 F21
F22 F22
F23 F23
O24 O24
C25 C25
C28 C28
N29 N29
C30 C30
C32 C32
C34 C34
C36 C36
O38 O38
C39 C39
C42 C42
O46 O46
O47 O47
HN1 HN1
HN1A HN1A
H6 H6
HN8 HN8
H12 H12
H14 H14
H25 H25
H25A H25A
H30 H30
H32 H32
H34 H34
H36 H36
H39 H39
H39A H39A
H42 H42
H42A H42A
H42B H42B