Atom Nomenclature for O75

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O75

Atom Name (V3) Atom Name (V2)
C1 C1
N2 N2
C3 C3
N4 N4
C5 C5
C6 C6
C7 C7
N8 N8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
F19 F19
F20 F20
F21 F21
C22 C22
O23 O23
N24 N24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
N34 N34
C35 C35
C36 C36
H6 H6
H9 H9
H9A H9A
H10 H10
H10A H10A
H11 H11
H11A H11A
H11B H11B
H13 H13
H15 H15
H17 H17
H25 H25
H25A H25A
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H32A H32A
H33 H33
H33A H33A
H35 H35
H35A H35A
H35B H35B
H36 H36
H36A H36A
H36B H36B