PDB Chemical Component O6M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O6M
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N2 |
C11 |
1.145 |
1.136 |
| C11 |
C10 |
1.442 |
1.432 |
| C10 |
C9 |
1.389 |
1.396 |
| C10 |
C12 |
1.387 |
1.397 |
| C9 |
C8 |
1.384 |
1.379 |
| C12 |
C6 |
1.384 |
1.378 |
| C8 |
C7 |
1.386 |
1.384 |
| C6 |
C7 |
1.385 |
1.384 |
| C6 |
S1 |
1.759 |
1.762 |
| O2 |
S1 |
1.428 |
1.420 |
| O1 |
S1 |
1.431 |
1.421 |
| S1 |
N1 |
1.634 |
1.656 |
| N1 |
C5 |
1.431 |
1.398 |
| C4 |
C5 |
1.376 |
1.384 |
| C4 |
C3 |
1.395 |
1.387 |
| C5 |
C13 |
1.386 |
1.397 |
| C3 |
C2 |
1.389 |
1.377 |
| C13 |
N3 |
1.377 |
1.381 |
| C13 |
C17 |
1.404 |
1.402 |
| C2 |
C17 |
1.408 |
1.395 |
| C2 |
C1 |
1.500 |
1.507 |
| N3 |
C14 |
1.367 |
1.356 |
| C17 |
C15 |
1.438 |
1.474 |
| C14 |
C15 |
1.379 |
1.363 |
| C15 |
C16 |
1.422 |
1.432 |
| C16 |
N4 |
1.146 |
1.136 |
| C12 |
H1 |
1.080 |
1.080 |
| C14 |
H2 |
1.080 |
1.080 |
| C1 |
H3 |
1.100 |
1.091 |
| C1 |
H4 |
1.100 |
1.091 |
| C1 |
H5 |
1.100 |
1.089 |
| C3 |
H6 |
1.080 |
1.081 |
| C4 |
H7 |
1.080 |
1.080 |
| N1 |
H8 |
1.000 |
0.970 |
| C7 |
H9 |
1.080 |
1.080 |
| C8 |
H10 |
1.080 |
1.080 |
| C9 |
H11 |
1.080 |
1.080 |
| N3 |
H12 |
1.000 |
0.970 |
Bond Angles for O6M
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C9 |
120.6 |
120.2 |
| C11 |
C10 |
C12 |
119.9 |
120.1 |
| C12 |
C10 |
C9 |
119.5 |
119.7 |
| C10 |
C9 |
C8 |
119.8 |
119.9 |
| C10 |
C9 |
H11 |
120.1 |
120.1 |
| C10 |
C12 |
C6 |
120.3 |
119.8 |
| C10 |
C12 |
H1 |
119.8 |
120.0 |
| C9 |
C8 |
H10 |
119.6 |
120.0 |
| C12 |
C6 |
C7 |
120.4 |
120.2 |
| C12 |
C6 |
S1 |
119.3 |
119.9 |
| C6 |
C12 |
H1 |
119.9 |
120.1 |
| C8 |
C7 |
H9 |
120.4 |
119.8 |
| C6 |
C7 |
H9 |
120.4 |
119.8 |
| S1 |
N1 |
H8 |
104.1 |
120.0 |
| N1 |
C5 |
C13 |
118.8 |
120.1 |
| C4 |
C5 |
C13 |
118.3 |
119.8 |
| C5 |
C4 |
H7 |
119.8 |
119.7 |
| C4 |
C3 |
H6 |
119.0 |
119.8 |
| C5 |
C13 |
N3 |
129.8 |
133.2 |
| C5 |
C13 |
C17 |
122.2 |
119.4 |
| C3 |
C2 |
C17 |
117.9 |
119.8 |
| N3 |
C13 |
C17 |
108.0 |
107.5 |
| C13 |
N3 |
H12 |
125.1 |
124.8 |
| C2 |
C17 |
C13 |
119.1 |
120.1 |
| C2 |
C1 |
H3 |
109.5 |
109.4 |
| C2 |
C1 |
H4 |
109.5 |
109.5 |
| C2 |
C1 |
H5 |
109.5 |
109.5 |
| N3 |
C14 |
H2 |
125.7 |
125.1 |
| C14 |
C15 |
C16 |
124.8 |
126.7 |
| C15 |
C14 |
H2 |
125.8 |
125.2 |
| C15 |
C16 |
N4 |
177.8 |
180.0 |
| H3 |
C1 |
H4 |
109.5 |
109.5 |
| H3 |
C1 |
H5 |
109.4 |
109.5 |
| H4 |
C1 |
H5 |
109.5 |
109.5 |
Torsion Angles for O6M
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C10 |
C11 |
C9 |
179.4 |
180.2 |
| C11 |
C10 |
C9 |
C8 |
179.4 |
180.3 |
| C11 |
C10 |
C9 |
H11 |
359.4 |
0.3 |
| C11 |
C10 |
C12 |
C6 |
180.2 |
179.7 |
| C11 |
C10 |
C12 |
H1 |
0.2 |
359.7 |
| C11 |
C10 |
C9 |
C12 |
179.4 |
180.2 |
| C9 |
C10 |
C12 |
C6 |
359.6 |
360.0 |
| C9 |
C10 |
C12 |
H1 |
179.6 |
180.0 |
| C10 |
C9 |
C8 |
H10 |
180.0 |
179.9 |
| C11 |
C10 |
C12 |
C9 |
180.6 |
179.8 |
| C12 |
C10 |
C9 |
C8 |
0.0 |
0.0 |
| C12 |
C10 |
C9 |
H11 |
180.0 |
180.0 |
| C10 |
C12 |
C6 |
C7 |
0.8 |
360.0 |
| C10 |
C12 |
C6 |
S1 |
179.7 |
180.0 |
| C6 |
C12 |
C10 |
H1 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H11 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H9 |
180.4 |
180.0 |
| C6 |
C12 |
C10 |
C9 |
359.6 |
360.0 |
| C10 |
C12 |
C6 |
H1 |
180.0 |
180.0 |
| C12 |
C6 |
C7 |
H9 |
179.2 |
180.0 |
| C10 |
C9 |
C8 |
C7 |
360.0 |
360.0 |
| C6 |
C7 |
C8 |
H9 |
180.0 |
180.0 |
| C12 |
C6 |
C7 |
S1 |
178.9 |
180.0 |
| C7 |
C6 |
C12 |
H1 |
180.7 |
180.0 |
| C8 |
C7 |
C6 |
H9 |
180.0 |
180.0 |
| C12 |
C6 |
S1 |
C7 |
181.0 |
180.0 |
| S1 |
C6 |
C12 |
H1 |
359.7 |
0.0 |
| C6 |
S1 |
N1 |
H8 |
57.4 |
240.4 |
| C12 |
C6 |
S1 |
O2 |
12.0 |
203.5 |
| O2 |
S1 |
N1 |
H8 |
173.8 |
126.8 |
| C12 |
C6 |
S1 |
O1 |
241.7 |
336.5 |
| O1 |
S1 |
N1 |
H8 |
301.8 |
353.9 |
| C12 |
C6 |
S1 |
N1 |
127.9 |
90.0 |
| S1 |
N1 |
C5 |
C13 |
191.4 |
215.5 |
| C4 |
C5 |
N1 |
C13 |
181.0 |
180.0 |
| N1 |
C5 |
C4 |
H7 |
359.2 |
0.0 |
| N1 |
C5 |
C13 |
N3 |
1.0 |
0.0 |
| N1 |
C5 |
C13 |
C17 |
180.8 |
180.0 |
| N1 |
C5 |
C4 |
C13 |
179.0 |
180.0 |
| C5 |
C4 |
C3 |
H6 |
179.7 |
180.0 |
| C4 |
C5 |
C13 |
N3 |
180.0 |
180.0 |
| C4 |
C5 |
C13 |
C17 |
359.9 |
360.0 |
| C4 |
C3 |
C2 |
C17 |
0.3 |
359.9 |
| C13 |
C5 |
C4 |
H7 |
180.2 |
180.0 |
| N3 |
C13 |
C5 |
C17 |
180.2 |
180.0 |
| C5 |
C13 |
N3 |
H12 |
359.7 |
0.0 |
| C2 |
C17 |
C13 |
C5 |
0.1 |
0.0 |
| C3 |
C2 |
C17 |
C13 |
359.7 |
0.0 |
| C3 |
C2 |
C1 |
H3 |
90.2 |
270.0 |
| C3 |
C2 |
C1 |
H4 |
210.2 |
30.0 |
| C3 |
C2 |
C1 |
H5 |
330.2 |
150.0 |
| C5 |
C13 |
N3 |
C17 |
179.9 |
180.0 |
| C2 |
C17 |
C13 |
N3 |
180.0 |
180.0 |
| C13 |
N3 |
C14 |
H2 |
180.1 |
180.2 |
| C5 |
C13 |
C17 |
N3 |
180.1 |
180.0 |
| C17 |
C13 |
N3 |
H12 |
179.8 |
180.0 |
| C5 |
C13 |
C17 |
C2 |
0.1 |
0.0 |
| N3 |
C13 |
C17 |
C2 |
180.0 |
180.0 |
| C17 |
C2 |
C1 |
H3 |
269.7 |
90.0 |
| C17 |
C2 |
C1 |
H4 |
29.8 |
210.0 |
| C17 |
C2 |
C1 |
H5 |
149.8 |
330.0 |
| H3 |
C1 |
C2 |
H4 |
240.0 |
240.0 |
| H3 |
C1 |
C2 |
H5 |
120.0 |
120.0 |
| H4 |
C1 |
C2 |
H5 |
240.0 |
240.0 |
| C15 |
C14 |
N3 |
H2 |
180.0 |
179.8 |
| C17 |
C15 |
C14 |
H2 |
179.9 |
180.0 |
| N3 |
C14 |
C15 |
H2 |
180.0 |
180.2 |
| C14 |
C15 |
C16 |
N4 |
330.4 |
221.0 |
| C16 |
C15 |
C14 |
H2 |
359.4 |
0.1 |
| H1 |
C12 |
C10 |
C9 |
179.6 |
180.0 |
| C10 |
C12 |
H1 |
C6 |
180.0 |
180.0 |
| H1 |
C12 |
C6 |
C7 |
180.7 |
180.0 |
| H1 |
C12 |
C6 |
S1 |
359.7 |
0.0 |
| H2 |
C14 |
C15 |
C16 |
359.4 |
0.1 |
| C2 |
C1 |
H3 |
H4 |
120.0 |
120.0 |
| C2 |
C1 |
H3 |
H5 |
240.0 |
240.0 |
| H4 |
C1 |
H3 |
H5 |
120.0 |
120.0 |
| C2 |
C1 |
H4 |
H3 |
240.0 |
240.0 |
| C2 |
C1 |
H4 |
H5 |
120.0 |
120.0 |
| H3 |
C1 |
H4 |
H5 |
240.0 |
240.0 |
| C2 |
C1 |
H5 |
H3 |
120.0 |
120.0 |
| C2 |
C1 |
H5 |
H4 |
240.0 |
240.0 |
| H3 |
C1 |
H5 |
H4 |
120.0 |
120.0 |
| H6 |
C3 |
C2 |
C17 |
180.3 |
180.0 |
| H7 |
C4 |
C5 |
C13 |
180.2 |
180.0 |
| H7 |
C4 |
C3 |
H6 |
359.7 |
359.9 |
| H8 |
N1 |
C5 |
C13 |
68.8 |
35.5 |
| H10 |
C8 |
C7 |
H9 |
0.4 |
0.0 |
| C10 |
C9 |
H11 |
C8 |
180.0 |
180.0 |
| H11 |
C9 |
C8 |
H10 |
360.0 |
360.0 |
| H12 |
N3 |
C13 |
C17 |
179.8 |
180.0 |
| H12 |
N3 |
C14 |
H2 |
0.1 |
359.9 |