Atom Nomenclature for O6K

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O6K

Atom Name (V3) Atom Name (V2)
O26 O1
C24 C1
O25 O2
C27 C2
C31 C3
C32 C4
C33 C5
N23 N1
C19 C6
C21 C7
O22 O3
C18 C8
C17 C9
C16 C10
N15 N2
C20 C11
C22 C12
C29 C13
C34 C14
C30 C15
C36 C16
O37 O4
N38 N3
C40 C17
C42 C18
C45 C19
C47 C20
O48 O5
N49 N4
C51 C21
C54 C22
C57 C23
O40 O6
C35 C24
O41 O7
N36 N5
C13 C25
C14 C26
C28 C27
C26 C28
C25 C29
C23 C30
C15 C31
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H32 H32
H33 H33