PDB Chemical Component O62
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O62
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C2 |
1.374 |
1.352 |
| C2 |
O1 |
1.349 |
1.341 |
| C2 |
C6 |
1.517 |
1.507 |
| C37 |
C3 |
1.521 |
1.507 |
| C4 |
C3 |
1.435 |
1.424 |
| C9 |
C4 |
1.450 |
1.484 |
| C4 |
N5 |
1.300 |
1.310 |
| C7 |
C6 |
1.539 |
1.530 |
| C6 |
C8 |
1.540 |
1.530 |
| C6 |
H6 |
1.100 |
1.089 |
| C11 |
C10 |
1.416 |
1.382 |
| C9 |
C10 |
1.424 |
1.395 |
| C10 |
CL15 |
1.723 |
1.736 |
| C12 |
C11 |
1.419 |
1.383 |
| C11 |
H11 |
1.080 |
1.079 |
| C13 |
C12 |
1.409 |
1.383 |
| C12 |
H12 |
1.080 |
1.081 |
| C13 |
C14 |
1.419 |
1.382 |
| C13 |
H13 |
1.080 |
1.079 |
| CL16 |
C14 |
1.743 |
1.736 |
| C14 |
C9 |
1.436 |
1.394 |
| C19 |
C22 |
1.401 |
1.407 |
| C22 |
C21 |
1.449 |
1.417 |
| C22 |
C23 |
1.398 |
1.404 |
| C23 |
C24 |
1.396 |
1.382 |
| C24 |
C25 |
1.412 |
1.403 |
| C24 |
C27 |
1.469 |
1.484 |
| C26 |
C25 |
1.431 |
1.360 |
| C25 |
H25 |
1.080 |
1.080 |
| C21 |
C26 |
1.406 |
1.403 |
| C26 |
H26 |
1.080 |
1.080 |
| C28 |
C27 |
1.428 |
1.394 |
| C27 |
C32 |
1.411 |
1.394 |
| O35 |
C34 |
1.195 |
1.215 |
| C20 |
C34 |
1.456 |
1.473 |
| C34 |
O36 |
1.367 |
1.347 |
| O33 |
C37 |
1.399 |
1.430 |
| C37 |
H37 |
1.100 |
1.090 |
| C37 |
H37A |
1.100 |
1.089 |
| N5 |
O1 |
1.370 |
1.209 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C7 |
H7B |
1.100 |
1.089 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.089 |
| C8 |
H8B |
1.100 |
1.090 |
| C18 |
C17 |
1.404 |
1.389 |
| C17 |
C20 |
1.431 |
1.388 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
C19 |
1.396 |
1.363 |
| C18 |
H18 |
1.080 |
1.079 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
C21 |
1.415 |
1.417 |
| C23 |
H23 |
1.080 |
1.080 |
| C28 |
C29 |
1.442 |
1.379 |
| C28 |
H28 |
1.080 |
1.079 |
| C29 |
C30 |
1.412 |
1.388 |
| C29 |
H29 |
1.080 |
1.080 |
| C30 |
C31 |
1.408 |
1.388 |
| C30 |
O33 |
1.339 |
1.359 |
| C32 |
C31 |
1.409 |
1.379 |
| C31 |
H31 |
1.081 |
1.081 |
| C32 |
H32 |
1.081 |
1.079 |
| O36 |
HO36 |
0.950 |
0.967 |
Bond Angles for O62
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
O1 |
107.8 |
106.7 |
| C3 |
C2 |
C6 |
129.0 |
126.7 |
| C6 |
C2 |
O1 |
123.2 |
126.7 |
| C2 |
C6 |
C8 |
108.8 |
109.5 |
| C2 |
C6 |
H6 |
109.3 |
109.4 |
| C4 |
N5 |
O1 |
109.4 |
111.5 |
| C7 |
C6 |
C8 |
112.1 |
109.5 |
| C7 |
C6 |
H6 |
105.7 |
109.5 |
| C8 |
C6 |
H6 |
109.0 |
109.5 |
| C6 |
C8 |
H8 |
109.5 |
109.5 |
| C6 |
C8 |
H8A |
109.4 |
109.5 |
| C6 |
C8 |
H8B |
109.5 |
109.5 |
| C11 |
C10 |
CL15 |
115.2 |
120.1 |
| C9 |
C10 |
CL15 |
125.7 |
120.0 |
| C12 |
C11 |
H11 |
119.7 |
120.0 |
| C13 |
C12 |
H12 |
119.8 |
119.9 |
| C14 |
C13 |
H13 |
120.1 |
119.9 |
| C13 |
C14 |
C9 |
119.6 |
119.9 |
| C19 |
C22 |
C21 |
121.2 |
119.5 |
| C19 |
C22 |
C23 |
117.2 |
121.0 |
| C21 |
C22 |
C23 |
121.5 |
119.5 |
| C22 |
C21 |
C26 |
116.5 |
119.7 |
| C22 |
C21 |
C20 |
117.7 |
119.2 |
| C22 |
C23 |
C24 |
121.4 |
119.4 |
| C22 |
C23 |
H23 |
119.3 |
120.3 |
| C25 |
C24 |
C27 |
121.1 |
119.7 |
| C24 |
C25 |
H25 |
119.7 |
119.6 |
| C24 |
C27 |
C32 |
119.2 |
120.1 |
| C26 |
C25 |
H25 |
119.7 |
119.6 |
| C21 |
C26 |
H26 |
119.3 |
119.9 |
| C28 |
C27 |
C32 |
118.7 |
119.9 |
| C27 |
C32 |
C31 |
120.9 |
119.9 |
| C27 |
C32 |
H32 |
119.5 |
120.0 |
| O35 |
C34 |
O36 |
118.1 |
120.0 |
| C20 |
C34 |
O36 |
120.3 |
120.0 |
| C34 |
O36 |
HO36 |
109.5 |
117.0 |
| O33 |
C37 |
H37 |
109.3 |
109.5 |
| O33 |
C37 |
H37A |
109.1 |
109.5 |
| H37 |
C37 |
H37A |
110.0 |
109.5 |
| H7 |
C7 |
H7A |
109.5 |
109.5 |
| H7 |
C7 |
H7B |
109.5 |
109.5 |
| H7A |
C7 |
H7B |
109.5 |
109.5 |
| H8 |
C8 |
H8A |
109.4 |
109.5 |
| H8 |
C8 |
H8B |
109.4 |
109.4 |
| H8A |
C8 |
H8B |
109.5 |
109.5 |
| C18 |
C17 |
C20 |
121.0 |
120.7 |
| C18 |
C17 |
H17 |
119.5 |
119.7 |
| C20 |
C17 |
H17 |
119.5 |
119.6 |
| C17 |
C20 |
C21 |
119.9 |
119.3 |
| C19 |
C18 |
H18 |
120.2 |
119.4 |
| C18 |
C19 |
H19 |
119.8 |
119.9 |
| C29 |
C28 |
H28 |
119.8 |
120.0 |
| C28 |
C29 |
C30 |
119.1 |
120.0 |
| C28 |
C29 |
H29 |
120.5 |
120.0 |
| C30 |
C29 |
H29 |
120.5 |
120.0 |
| C29 |
C30 |
C31 |
120.2 |
120.1 |
| C29 |
C30 |
O33 |
121.6 |
119.9 |
| C31 |
C30 |
O33 |
118.2 |
119.9 |
| C30 |
C31 |
H31 |
119.7 |
120.0 |
| C32 |
C31 |
H31 |
119.7 |
119.9 |
Torsion Angles for O62
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C2 |
C3 |
O1 |
179.6 |
180.2 |
| C3 |
C2 |
C6 |
C8 |
128.4 |
239.7 |
| C3 |
C2 |
C6 |
H6 |
9.6 |
359.7 |
| C3 |
C2 |
O1 |
C6 |
179.6 |
180.2 |
| O1 |
C2 |
C6 |
C8 |
308.0 |
60.0 |
| O1 |
C2 |
C6 |
H6 |
189.1 |
180.0 |
| C4 |
N5 |
O1 |
C2 |
360.0 |
360.0 |
| C3 |
C2 |
C6 |
O1 |
180.5 |
179.7 |
| C7 |
C6 |
C2 |
C8 |
124.4 |
240.0 |
| C7 |
C6 |
C2 |
H6 |
243.3 |
120.0 |
| C8 |
C6 |
C2 |
H6 |
118.9 |
240.0 |
| C2 |
C6 |
C8 |
H8 |
125.4 |
60.0 |
| C2 |
C6 |
C8 |
H8A |
245.4 |
180.0 |
| C2 |
C6 |
C8 |
H8B |
5.4 |
300.0 |
| C37 |
C3 |
C2 |
O1 |
180.2 |
180.0 |
| C4 |
C3 |
C2 |
O1 |
0.4 |
0.0 |
| C4 |
C3 |
C2 |
C6 |
180.0 |
180.3 |
| C2 |
C6 |
C7 |
C8 |
237.5 |
120.0 |
| C2 |
C6 |
C7 |
H6 |
118.9 |
240.0 |
| C8 |
C6 |
C7 |
H6 |
241.4 |
120.1 |
| C7 |
C6 |
C8 |
H8 |
1.2 |
179.9 |
| C7 |
C6 |
C8 |
H8A |
121.2 |
300.0 |
| C7 |
C6 |
C8 |
H8B |
241.2 |
60.0 |
| C8 |
C6 |
C2 |
O1 |
308.0 |
60.0 |
| C2 |
C6 |
C8 |
H6 |
240.9 |
120.0 |
| C7 |
C6 |
C8 |
H6 |
116.7 |
239.9 |
| H8 |
C8 |
C6 |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
C6 |
H8B |
120.0 |
119.9 |
| H8A |
C8 |
C6 |
H8B |
240.0 |
240.0 |
| H6 |
C6 |
C2 |
O1 |
189.1 |
180.0 |
| C2 |
C6 |
H6 |
C8 |
118.8 |
240.0 |
| C7 |
C6 |
H6 |
C8 |
239.3 |
120.1 |
| H6 |
C6 |
C8 |
H8 |
244.5 |
300.0 |
| H6 |
C6 |
C8 |
H8A |
4.5 |
60.0 |
| H6 |
C6 |
C8 |
H8B |
124.5 |
180.1 |
| C9 |
C10 |
C11 |
CL15 |
179.7 |
180.3 |
| C11 |
C10 |
C9 |
CL15 |
180.4 |
179.7 |
| C12 |
C11 |
C10 |
CL15 |
180.3 |
180.0 |
| H11 |
C11 |
C10 |
CL15 |
0.3 |
360.0 |
| C13 |
C12 |
C11 |
H11 |
180.1 |
180.0 |
| H12 |
C12 |
C11 |
H11 |
0.1 |
0.0 |
| C14 |
C13 |
C12 |
H12 |
179.8 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
359.8 |
359.9 |
| H13 |
C13 |
C14 |
C9 |
180.1 |
179.8 |
| CL16 |
C14 |
C13 |
H13 |
359.9 |
0.0 |
| C14 |
C9 |
C10 |
CL15 |
179.6 |
179.7 |
| C9 |
C14 |
C13 |
H13 |
180.1 |
179.8 |
| C21 |
C22 |
C19 |
C23 |
181.4 |
179.8 |
| C19 |
C22 |
C21 |
C26 |
180.1 |
180.3 |
| C19 |
C22 |
C21 |
C20 |
358.4 |
0.2 |
| C19 |
C22 |
C23 |
C24 |
180.1 |
179.7 |
| C19 |
C22 |
C23 |
H23 |
0.1 |
359.8 |
| C19 |
C22 |
C21 |
C23 |
178.6 |
180.2 |
| C21 |
C22 |
C23 |
C24 |
358.7 |
359.9 |
| C21 |
C22 |
C23 |
H23 |
178.7 |
180.0 |
| C22 |
C21 |
C26 |
H26 |
178.7 |
180.0 |
| C17 |
C20 |
C21 |
C22 |
1.5 |
359.6 |
| C19 |
C22 |
C23 |
C21 |
181.4 |
179.8 |
| C23 |
C22 |
C21 |
C26 |
1.5 |
0.1 |
| C23 |
C22 |
C21 |
C20 |
179.8 |
180.0 |
| C22 |
C23 |
C24 |
H23 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
H25 |
179.4 |
179.9 |
| C23 |
C24 |
C27 |
C32 |
160.4 |
180.0 |
| C22 |
C23 |
C24 |
C25 |
0.8 |
360.0 |
| C25 |
C24 |
C27 |
C32 |
340.7 |
0.1 |
| C26 |
C25 |
C24 |
H25 |
180.0 |
180.1 |
| C22 |
C23 |
C24 |
C27 |
181.1 |
180.0 |
| C27 |
C24 |
C25 |
H25 |
359.1 |
359.9 |
| C28 |
C27 |
C24 |
C32 |
180.8 |
180.2 |
| C24 |
C27 |
C32 |
C31 |
180.6 |
179.7 |
| C24 |
C27 |
C32 |
H32 |
0.6 |
360.0 |
| C22 |
C21 |
C26 |
C25 |
358.7 |
359.9 |
| C26 |
C25 |
C24 |
C27 |
179.1 |
180.0 |
| C24 |
C25 |
C26 |
H25 |
180.0 |
179.9 |
| H25 |
C25 |
C24 |
C27 |
359.1 |
359.9 |
| C26 |
C21 |
C22 |
C23 |
1.5 |
0.1 |
| C22 |
C21 |
C26 |
C20 |
178.2 |
179.9 |
| C21 |
C26 |
C25 |
H25 |
180.9 |
180.1 |
| H26 |
C26 |
C25 |
H25 |
0.9 |
0.1 |
| C24 |
C27 |
C28 |
C32 |
179.2 |
179.8 |
| C28 |
C27 |
C32 |
C31 |
359.8 |
359.5 |
| C28 |
C27 |
C32 |
H32 |
179.8 |
179.8 |
| C27 |
C32 |
C31 |
H31 |
180.3 |
180.2 |
| C20 |
C34 |
O35 |
O36 |
180.5 |
179.9 |
| O35 |
C34 |
O36 |
HO36 |
0.0 |
360.0 |
| C22 |
C21 |
C20 |
C34 |
180.4 |
180.0 |
| O35 |
C34 |
C20 |
O36 |
179.5 |
180.1 |
| C20 |
C34 |
O36 |
HO36 |
179.5 |
180.1 |
| H37 |
C37 |
O33 |
H37A |
120.3 |
120.1 |
| O33 |
C37 |
H37 |
H37A |
240.3 |
240.0 |
| O33 |
C37 |
H37A |
H37 |
119.9 |
120.0 |
| H7 |
C7 |
C6 |
C8 |
179.7 |
300.0 |
| H7 |
C7 |
C6 |
H6 |
298.3 |
180.0 |
| H7A |
C7 |
H7 |
H7B |
120.0 |
120.0 |
| H7A |
C7 |
C6 |
C8 |
299.7 |
60.0 |
| H7A |
C7 |
C6 |
H6 |
58.3 |
300.0 |
| H7 |
C7 |
H7A |
H7B |
240.0 |
240.0 |
| H7B |
C7 |
C6 |
C8 |
59.7 |
180.0 |
| H7B |
C7 |
C6 |
H6 |
178.3 |
59.9 |
| H7 |
C7 |
H7B |
H7A |
120.0 |
120.0 |
| H8 |
C8 |
C6 |
H6 |
244.5 |
300.0 |
| C6 |
C8 |
H8 |
H8A |
120.0 |
120.0 |
| C6 |
C8 |
H8 |
H8B |
240.0 |
240.0 |
| H8A |
C8 |
H8 |
H8B |
120.0 |
120.0 |
| H8A |
C8 |
C6 |
H6 |
4.5 |
60.0 |
| C6 |
C8 |
H8A |
H8 |
240.0 |
240.0 |
| C6 |
C8 |
H8A |
H8B |
120.0 |
120.0 |
| H8 |
C8 |
H8A |
H8B |
240.0 |
240.0 |
| H8B |
C8 |
C6 |
H6 |
124.5 |
180.1 |
| C6 |
C8 |
H8B |
H8 |
120.0 |
120.0 |
| C6 |
C8 |
H8B |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
H8B |
H8A |
120.0 |
120.0 |
| C20 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| C18 |
C17 |
C20 |
C21 |
358.9 |
0.5 |
| C22 |
C21 |
C20 |
C17 |
1.5 |
359.6 |
| C17 |
C20 |
C34 |
O36 |
298.0 |
5.8 |
| C18 |
C17 |
C20 |
H17 |
180.0 |
180.0 |
| C18 |
C17 |
H17 |
C20 |
180.0 |
180.0 |
| H17 |
C17 |
C20 |
C21 |
178.9 |
180.5 |
| C18 |
C19 |
C22 |
C21 |
1.2 |
0.0 |
| C18 |
C19 |
C22 |
C23 |
179.9 |
180.2 |
| C19 |
C18 |
C17 |
C20 |
0.7 |
359.7 |
| C19 |
C18 |
C17 |
H17 |
180.7 |
179.7 |
| H18 |
C18 |
C17 |
C20 |
180.7 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
0.7 |
0.0 |
| H18 |
C18 |
C19 |
H19 |
359.2 |
359.7 |
| H19 |
C19 |
C22 |
C21 |
181.3 |
180.0 |
| H19 |
C19 |
C22 |
C23 |
359.9 |
0.2 |
| H19 |
C19 |
C18 |
H18 |
359.2 |
359.7 |
| C20 |
C21 |
C22 |
C23 |
179.8 |
180.0 |
| C22 |
C21 |
C20 |
C26 |
181.8 |
180.1 |
| C20 |
C21 |
C26 |
H26 |
0.5 |
0.1 |
| C21 |
C20 |
C34 |
O36 |
119.0 |
185.3 |
| C21 |
C20 |
C17 |
H17 |
178.9 |
180.5 |
| C22 |
C23 |
H23 |
C24 |
180.0 |
180.0 |
| C29 |
C28 |
C27 |
C32 |
0.0 |
0.3 |
| C30 |
C29 |
C28 |
H29 |
180.0 |
180.0 |
| C28 |
C29 |
C30 |
C31 |
0.1 |
0.0 |
| C28 |
C29 |
C30 |
O33 |
179.9 |
180.0 |
| H28 |
C28 |
C27 |
C32 |
180.0 |
180.2 |
| H28 |
C28 |
C29 |
C30 |
180.0 |
180.0 |
| H28 |
C28 |
C29 |
H29 |
360.0 |
0.0 |
| C30 |
C29 |
C28 |
H28 |
180.0 |
180.0 |
| C28 |
C29 |
C30 |
H29 |
180.0 |
180.0 |
| C31 |
C30 |
C29 |
O33 |
180.2 |
180.0 |
| C29 |
C30 |
C31 |
H31 |
179.8 |
180.0 |
| H29 |
C29 |
C28 |
H28 |
360.0 |
0.0 |
| C28 |
C29 |
H29 |
C30 |
180.0 |
180.0 |
| H29 |
C29 |
C30 |
C31 |
180.1 |
180.0 |
| H29 |
C29 |
C30 |
O33 |
359.9 |
360.0 |
| C27 |
C32 |
C31 |
C30 |
0.2 |
0.5 |
| C31 |
C30 |
C29 |
H29 |
180.1 |
180.0 |
| C29 |
C30 |
C31 |
O33 |
179.8 |
180.0 |
| C32 |
C31 |
C30 |
H31 |
180.0 |
179.7 |
| C30 |
O33 |
C37 |
H37 |
61.9 |
60.1 |
| C30 |
O33 |
C37 |
H37A |
301.6 |
300.0 |
| O33 |
C30 |
C29 |
H29 |
359.9 |
360.0 |
| C29 |
C30 |
O33 |
C31 |
180.2 |
180.0 |
| O33 |
C30 |
C31 |
H31 |
360.0 |
0.1 |
| C27 |
C32 |
C31 |
H32 |
180.0 |
180.3 |
| C32 |
C31 |
C30 |
O33 |
180.0 |
179.7 |
| C30 |
C31 |
C32 |
H31 |
180.0 |
180.3 |
| H31 |
C31 |
C30 |
O33 |
360.0 |
0.1 |
| C27 |
C32 |
H32 |
C31 |
180.0 |
179.7 |
| H32 |
C32 |
C31 |
H31 |
0.3 |
359.9 |