Atom Nomenclature for O62

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O62

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
C4 C4
C6 C6
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C22 C22
C24 C24
C25 C25
C26 C26
C27 C27
C34 C34
C37 C37
O1 O1
N5 N5
C7 C7
C8 C8
C9 C9
CL15 CL15
CL16 CL16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C23 C23
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
O33 O33
O35 O35
O36 O36
H6 H6
H11 H11
H12 H12
H13 H13
H25 H25
H26 H26
H37 H37
H37A H37A
H7 H7
H7A H7A
H7B H7B
H8 H8
H8A H8A
H8B H8B
H17 H17
H18 H18
H19 H19
H23 H23
H28 H28
H29 H29
H31 H31
H32 H32
HO36 HO36