PDB Chemical Component O61
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O61
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C1 |
1.400 |
1.388 |
| C2 |
C1 |
1.398 |
1.381 |
| C1 |
H1 |
1.080 |
1.080 |
| C3 |
C2 |
1.403 |
1.384 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
C3 |
1.396 |
1.384 |
| CL7 |
C3 |
1.722 |
1.735 |
| C4 |
C5 |
1.397 |
1.381 |
| C4 |
H4 |
1.080 |
1.081 |
| C13 |
C5 |
1.506 |
1.506 |
| C5 |
C6 |
1.422 |
1.389 |
| C6 |
N8 |
1.447 |
1.403 |
| N12 |
N8 |
1.353 |
1.406 |
| N8 |
C9 |
1.377 |
1.350 |
| N10 |
C9 |
1.321 |
1.307 |
| C9 |
H9 |
1.080 |
1.080 |
| N11 |
N10 |
1.354 |
1.284 |
| N12 |
N11 |
1.338 |
1.289 |
| C13 |
C14 |
1.512 |
1.531 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| N15 |
C14 |
1.450 |
1.465 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| N15 |
C16 |
1.367 |
1.348 |
| N15 |
HN15 |
1.000 |
0.970 |
| C17 |
C16 |
1.539 |
1.508 |
| C16 |
O39 |
1.230 |
1.212 |
| C18 |
C17 |
1.543 |
1.529 |
| C17 |
N19 |
1.468 |
1.465 |
| C17 |
H17 |
1.100 |
1.090 |
| C33 |
C18 |
1.519 |
1.507 |
| C18 |
H18 |
1.100 |
1.091 |
| C18 |
H18A |
1.100 |
1.090 |
| N19 |
C20 |
1.370 |
1.348 |
| N19 |
HN19 |
1.000 |
0.970 |
| O22 |
C20 |
1.232 |
1.216 |
| C20 |
C21 |
1.505 |
1.476 |
| C23 |
C21 |
1.394 |
1.397 |
| C21 |
C25 |
1.394 |
1.398 |
| C23 |
C24 |
1.396 |
1.376 |
| C23 |
H23 |
1.079 |
1.080 |
| C24 |
C27 |
1.410 |
1.393 |
| C24 |
H24 |
1.080 |
1.080 |
| C25 |
C26 |
1.388 |
1.381 |
| C25 |
H25 |
1.080 |
1.080 |
| C27 |
C26 |
1.421 |
1.398 |
| C26 |
S31 |
1.780 |
1.765 |
| C27 |
N28 |
1.424 |
1.389 |
| N28 |
C29 |
1.388 |
1.331 |
| N28 |
HN28 |
1.000 |
0.970 |
| C30 |
C29 |
1.521 |
1.503 |
| C29 |
O32 |
1.225 |
1.212 |
| S31 |
C30 |
1.822 |
1.825 |
| C30 |
H30 |
1.100 |
1.091 |
| C30 |
H30A |
1.099 |
1.089 |
| C34 |
C33 |
1.411 |
1.382 |
| C38 |
C33 |
1.414 |
1.382 |
| C35 |
C34 |
1.412 |
1.382 |
| C34 |
H34 |
1.080 |
1.081 |
| C36 |
C35 |
1.399 |
1.382 |
| C35 |
H35 |
1.080 |
1.080 |
| C36 |
C37 |
1.393 |
1.383 |
| C36 |
H36 |
1.080 |
1.080 |
| C37 |
C38 |
1.414 |
1.382 |
| C37 |
H37 |
1.080 |
1.080 |
| C38 |
H38 |
1.080 |
1.080 |
Bond Angles for O61
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
H1 |
119.6 |
120.1 |
| C2 |
C1 |
H1 |
119.7 |
120.0 |
| C3 |
C2 |
H2 |
119.8 |
119.9 |
| C5 |
C4 |
H4 |
120.1 |
119.9 |
| C4 |
C5 |
C6 |
121.0 |
119.9 |
| C5 |
C6 |
N8 |
120.0 |
120.1 |
| C6 |
N8 |
C9 |
129.3 |
127.4 |
| N8 |
C9 |
H9 |
124.5 |
126.4 |
| N10 |
C9 |
H9 |
124.5 |
126.3 |
| C14 |
C13 |
H13 |
106.6 |
109.4 |
| C14 |
C13 |
H13A |
106.5 |
109.5 |
| C13 |
C14 |
H14 |
110.3 |
109.5 |
| C13 |
C14 |
H14A |
110.3 |
109.5 |
| H13 |
C13 |
H13A |
112.3 |
109.5 |
| N15 |
C14 |
H14 |
110.2 |
109.4 |
| N15 |
C14 |
H14A |
110.2 |
109.5 |
| H14 |
C14 |
H14A |
108.7 |
109.5 |
| C17 |
C16 |
O39 |
122.6 |
120.0 |
| C16 |
C17 |
H17 |
109.2 |
109.5 |
| C18 |
C17 |
H17 |
110.4 |
109.5 |
| C17 |
N19 |
HN19 |
117.9 |
120.0 |
| C33 |
C18 |
H18 |
106.8 |
109.5 |
| C33 |
C18 |
H18A |
106.8 |
109.5 |
| H18 |
C18 |
H18A |
112.0 |
109.4 |
| C20 |
C21 |
C25 |
116.7 |
120.2 |
| C23 |
C21 |
C25 |
118.2 |
119.6 |
| C21 |
C25 |
C26 |
121.5 |
119.8 |
| C21 |
C25 |
H25 |
119.3 |
120.1 |
| C24 |
C23 |
H23 |
119.0 |
119.9 |
| C23 |
C24 |
C27 |
119.8 |
120.5 |
| C23 |
C24 |
H24 |
120.1 |
119.8 |
| C27 |
C24 |
H24 |
120.1 |
119.7 |
| C24 |
C27 |
C26 |
118.3 |
119.3 |
| C24 |
C27 |
N28 |
121.6 |
119.2 |
| C26 |
C25 |
H25 |
119.3 |
120.1 |
| C25 |
C26 |
S31 |
115.9 |
120.1 |
| C27 |
C26 |
S31 |
123.7 |
119.3 |
| C26 |
S31 |
C30 |
97.2 |
101.6 |
| C27 |
N28 |
C29 |
124.0 |
125.9 |
| C27 |
N28 |
HN28 |
118.0 |
117.0 |
| C29 |
N28 |
HN28 |
118.0 |
117.1 |
| N28 |
C29 |
O32 |
118.5 |
118.2 |
| C30 |
C29 |
O32 |
120.6 |
118.3 |
| S31 |
C30 |
H30 |
108.2 |
109.9 |
| S31 |
C30 |
H30A |
108.3 |
109.6 |
| H30 |
C30 |
H30A |
110.7 |
109.6 |
| C35 |
C34 |
H34 |
119.8 |
120.0 |
| C36 |
C35 |
H35 |
119.1 |
120.0 |
| C36 |
C37 |
H37 |
119.5 |
120.0 |
| C37 |
C38 |
H38 |
119.4 |
120.0 |
Torsion Angles for O61
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.8 |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C3 |
C2 |
C1 |
H1 |
180.4 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.4 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
178.9 |
180.0 |
| CL7 |
C3 |
C2 |
H2 |
358.9 |
360.0 |
| C4 |
C5 |
C6 |
N8 |
181.6 |
180.1 |
| H4 |
C4 |
C5 |
C6 |
178.2 |
179.8 |
| C13 |
C5 |
C4 |
H4 |
1.8 |
0.0 |
| C5 |
C6 |
C1 |
H1 |
179.5 |
179.7 |
| C6 |
C5 |
C4 |
H4 |
178.2 |
179.8 |
| C5 |
C6 |
N8 |
C9 |
302.2 |
180.0 |
| N8 |
C6 |
C1 |
H1 |
359.1 |
0.1 |
| C6 |
N8 |
C9 |
H9 |
358.0 |
359.8 |
| N12 |
N8 |
C9 |
H9 |
181.3 |
180.2 |
| N10 |
C9 |
N8 |
H9 |
180.0 |
180.1 |
| N8 |
C9 |
N10 |
H9 |
180.0 |
179.9 |
| N11 |
N10 |
C9 |
H9 |
178.8 |
180.1 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
120.0 |
| N15 |
C14 |
C13 |
H14 |
240.0 |
240.1 |
| N15 |
C14 |
C13 |
H14A |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
H14A |
240.0 |
240.0 |
| C14 |
C13 |
H13 |
H13A |
243.7 |
240.0 |
| H13 |
C13 |
C14 |
H14 |
201.6 |
180.0 |
| H13 |
C13 |
C14 |
H14A |
321.6 |
300.0 |
| C14 |
C13 |
H13A |
H13 |
116.3 |
119.9 |
| H13A |
C13 |
C14 |
H14 |
81.5 |
60.0 |
| H13A |
C13 |
C14 |
H14A |
201.6 |
180.0 |
| N15 |
C14 |
C13 |
H13 |
81.6 |
60.0 |
| N15 |
C14 |
C13 |
H13A |
321.5 |
300.0 |
| C13 |
C14 |
N15 |
H14 |
120.0 |
120.0 |
| C13 |
C14 |
N15 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
N15 |
H14A |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
H13 |
201.6 |
180.0 |
| H14 |
C14 |
C13 |
H13A |
81.5 |
60.0 |
| C13 |
C14 |
H14 |
H14A |
121.0 |
120.0 |
| N15 |
C14 |
H14 |
H14A |
239.1 |
240.0 |
| H14A |
C14 |
C13 |
H13 |
321.6 |
300.0 |
| H14A |
C14 |
C13 |
H13A |
201.6 |
180.0 |
| C13 |
C14 |
H14A |
H14 |
239.0 |
240.0 |
| N15 |
C14 |
H14A |
H14 |
120.9 |
120.0 |
| N15 |
C16 |
C17 |
H17 |
34.3 |
60.0 |
| HN15 |
N15 |
C14 |
H14 |
256.5 |
240.0 |
| HN15 |
N15 |
C14 |
H14A |
136.5 |
120.0 |
| C18 |
C17 |
C16 |
H17 |
238.7 |
240.0 |
| C16 |
C17 |
N19 |
HN19 |
62.7 |
25.0 |
| O39 |
C16 |
C17 |
H17 |
215.2 |
240.0 |
| C16 |
C17 |
C18 |
H17 |
120.6 |
120.0 |
| C18 |
C17 |
N19 |
HN19 |
304.3 |
265.0 |
| H17 |
C17 |
C16 |
O39 |
215.2 |
240.0 |
| H17 |
C17 |
N19 |
HN19 |
183.1 |
145.0 |
| C33 |
C18 |
C17 |
H17 |
57.6 |
55.0 |
| H18 |
C18 |
C33 |
H18A |
120.0 |
120.0 |
| H18 |
C18 |
C17 |
H17 |
177.6 |
175.0 |
| C33 |
C18 |
H18 |
H18A |
243.4 |
240.0 |
| H18A |
C18 |
C17 |
H17 |
297.6 |
295.0 |
| C33 |
C18 |
H18A |
H18 |
116.6 |
120.0 |
| O22 |
C20 |
C21 |
C25 |
31.0 |
360.0 |
| C23 |
C21 |
C20 |
C25 |
183.5 |
180.3 |
| C20 |
C21 |
C25 |
C26 |
182.8 |
180.1 |
| C20 |
C21 |
C25 |
H25 |
2.8 |
0.1 |
| C20 |
C21 |
C23 |
C25 |
176.4 |
179.7 |
| C23 |
C21 |
C25 |
C26 |
359.5 |
359.8 |
| C23 |
C21 |
C25 |
H25 |
179.5 |
179.8 |
| C26 |
C25 |
C21 |
H25 |
180.0 |
180.0 |
| C21 |
C25 |
C26 |
S31 |
179.4 |
180.2 |
| C24 |
C23 |
C21 |
C25 |
1.3 |
0.2 |
| C27 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
| C23 |
C24 |
C27 |
C26 |
0.4 |
359.9 |
| C23 |
C24 |
C27 |
N28 |
180.5 |
180.4 |
| H23 |
C23 |
C21 |
C25 |
181.3 |
180.2 |
| H23 |
C23 |
C24 |
C27 |
178.7 |
180.0 |
| H23 |
C23 |
C24 |
H24 |
358.7 |
360.0 |
| C27 |
C24 |
C23 |
H23 |
178.7 |
180.0 |
| C23 |
C24 |
C27 |
H24 |
180.0 |
180.0 |
| C24 |
C27 |
C26 |
S31 |
180.6 |
180.0 |
| C24 |
C27 |
N28 |
C29 |
157.7 |
202.1 |
| C24 |
C27 |
N28 |
HN28 |
337.7 |
22.2 |
| H24 |
C24 |
C23 |
H23 |
358.7 |
360.0 |
| C23 |
C24 |
H24 |
C27 |
180.0 |
180.0 |
| H24 |
C24 |
C27 |
C26 |
180.4 |
179.9 |
| H24 |
C24 |
C27 |
N28 |
0.5 |
0.4 |
| C21 |
C25 |
C26 |
H25 |
180.0 |
180.0 |
| C24 |
C27 |
C26 |
C25 |
0.4 |
0.1 |
| C27 |
C26 |
C25 |
S31 |
180.2 |
179.9 |
| C25 |
C26 |
S31 |
C30 |
211.1 |
149.1 |
| C21 |
C25 |
H25 |
C26 |
180.0 |
180.0 |
| H25 |
C25 |
C26 |
S31 |
359.4 |
0.2 |
| C26 |
C27 |
C24 |
H24 |
180.4 |
179.9 |
| C24 |
C27 |
C26 |
N28 |
180.1 |
180.5 |
| C27 |
C26 |
C25 |
H25 |
179.6 |
180.1 |
| C25 |
C26 |
C27 |
S31 |
179.8 |
180.1 |
| C27 |
C26 |
S31 |
C30 |
30.8 |
329.2 |
| S31 |
C26 |
C25 |
H25 |
359.4 |
0.2 |
| C26 |
S31 |
C30 |
H30 |
192.8 |
285.2 |
| C26 |
S31 |
C30 |
H30A |
72.8 |
164.7 |
| N28 |
C27 |
C24 |
H24 |
0.5 |
0.4 |
| C24 |
C27 |
N28 |
C26 |
179.9 |
179.5 |
| N28 |
C27 |
C26 |
S31 |
0.5 |
359.5 |
| C29 |
N28 |
C27 |
HN28 |
180.0 |
179.9 |
| C27 |
N28 |
C29 |
O32 |
180.2 |
179.0 |
| C27 |
N28 |
C29 |
HN28 |
180.0 |
180.1 |
| C30 |
C29 |
N28 |
O32 |
180.0 |
180.1 |
| C27 |
N28 |
HN28 |
C29 |
180.0 |
180.0 |
| HN28 |
N28 |
C29 |
O32 |
0.2 |
359.0 |
| C26 |
S31 |
C30 |
C29 |
312.8 |
45.1 |
| C30 |
C29 |
N28 |
HN28 |
180.2 |
179.0 |
| N28 |
C29 |
C30 |
O32 |
180.0 |
179.9 |
| O32 |
C29 |
N28 |
HN28 |
0.2 |
359.0 |
| S31 |
C30 |
C29 |
O32 |
218.6 |
144.7 |
| H30 |
C30 |
S31 |
H30A |
120.0 |
120.4 |
| H30 |
C30 |
C29 |
O32 |
338.6 |
264.8 |
| S31 |
C30 |
H30 |
H30A |
241.5 |
239.6 |
| H30A |
C30 |
C29 |
O32 |
98.6 |
25.1 |
| S31 |
C30 |
H30A |
H30 |
118.5 |
120.6 |
| C34 |
C33 |
C18 |
H18 |
183.2 |
329.9 |
| C34 |
C33 |
C18 |
H18A |
63.2 |
210.0 |
| C38 |
C33 |
C18 |
H18 |
4.2 |
149.8 |
| C38 |
C33 |
C18 |
H18A |
244.2 |
29.8 |
| C36 |
C35 |
C34 |
H34 |
180.7 |
180.0 |
| H35 |
C35 |
C34 |
H34 |
0.7 |
360.0 |
| C37 |
C36 |
C35 |
H35 |
177.0 |
180.0 |
| C36 |
C37 |
C38 |
H38 |
179.3 |
180.0 |
| H36 |
C36 |
C35 |
H35 |
357.0 |
360.0 |
| H36 |
C36 |
C37 |
H37 |
3.0 |
0.0 |
| H37 |
C37 |
C38 |
H38 |
359.3 |
359.7 |