Atom Nomenclature for O61

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O61

Atom Name (V3) Atom Name (V2)
C20 C20
C21 C21
O22 O22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
N28 N28
C29 C29
C30 C30
S31 S31
O32 O32
N19 N19
C17 C17
C16 C16
O39 O39
C18 C18
C33 C33
C34 C34
C38 C38
C35 C35
C37 C37
C36 C36
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
CL7 CL7
N8 N8
C9 C9
N10 N10
N11 N11
N12 N12
C13 C13
C14 C14
N15 N15
H23 H23
H24 H24
H25 H25
HN28 HN28
H30 H30
H30A H30A
HN19 HN19
H17 H17
H18 H18
H18A H18A
H34 H34
H38 H38
H35 H35
H37 H37
H36 H36
H1 H1
H2 H2
H4 H4
H9 H9
H13 H13
H13A H13A
H14 H14
H14A H14A
HN15 HN15