PDB Chemical Component O59

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for O59

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.500	1.530
C1	O3	1.481	1.429
N1	S1	1.569	1.656
O1	S1	1.425	1.421
S1	O2	1.432	1.421
S1	O3	1.574	1.523
C2	C3	1.506	1.530
N2	S2	1.574	1.656
S2	O4	1.579	1.523
S2	O5	1.431	1.421
S2	O6	1.428	1.420
C3	C4	1.508	1.530
C4	C5	1.505	1.531
O4	C8	1.480	1.429
C5	C6	1.499	1.530
C6	C7	1.504	1.530
C7	C8	1.502	1.530
C1	H1	1.100	1.090
C1	H1A	1.100	1.090
N1	HN1	1.000	0.970
N1	HN1A	1.000	0.970
C2	H2	1.101	1.090
C2	H2A	1.100	1.090
N2	HN2	1.000	0.970
N2	HN2A	1.000	0.970
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C4	H4	1.100	1.089
C4	H4A	1.100	1.091
C5	H5	1.100	1.090
C5	H5A	1.100	1.090
C6	H6	1.101	1.090
C6	H6A	1.100	1.090
C7	H7	1.100	1.089
C7	H7A	1.100	1.091
C8	H8	1.100	1.090
C8	H8A	1.100	1.090

Bond Angles for O59

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O3	107.5	109.5
C1	C2	C3	114.2	109.5
C2	C1	H1	110.2	109.5
C2	C1	H1A	110.1	109.5
C1	C2	H2	107.9	109.5
C1	C2	H2A	107.9	109.5
C1	O3	S1	117.6	114.0
O3	C1	H1	110.1	109.5
O3	C1	H1A	110.2	109.5
N1	S1	O1	109.3	106.4
N1	S1	O2	108.5	106.4
N1	S1	O3	109.3	107.2
S1	N1	HN1	109.5	120.0
S1	N1	HN1A	109.5	120.0
O1	S1	O2	119.8	123.1
O1	S1	O3	105.0	106.4
O2	S1	O3	104.4	106.4
C2	C3	C4	114.1	109.5
C3	C2	H2	107.9	109.4
C3	C2	H2A	107.9	109.5
C2	C3	H3	108.0	109.5
C2	C3	H3A	107.9	109.5
N2	S2	O4	109.4	107.2
N2	S2	O5	108.8	106.4
N2	S2	O6	108.4	106.4
S2	N2	HN2	109.5	120.0
S2	N2	HN2A	109.4	120.0
O4	S2	O5	105.0	106.4
O4	S2	O6	104.5	106.4
S2	O4	C8	118.3	114.0
O5	S2	O6	120.3	123.1
C3	C4	C5	114.4	109.5
C4	C3	H3	107.9	109.5
C4	C3	H3A	108.0	109.5
C3	C4	H4	107.8	109.5
C3	C4	H4A	107.9	109.5
C4	C5	C6	114.1	109.5
C5	C4	H4	107.9	109.5
C5	C4	H4A	107.8	109.4
C4	C5	H5	108.0	109.5
C4	C5	H5A	108.0	109.4
O4	C8	C7	107.1	109.5
O4	C8	H8	110.2	109.5
O4	C8	H8A	110.3	109.4
C5	C6	C7	113.4	109.5
C6	C5	H5	108.0	109.5
C6	C5	H5A	107.9	109.5
C5	C6	H6	108.2	109.5
C5	C6	H6A	108.2	109.5
C6	C7	C8	114.0	109.5
C7	C6	H6	108.2	109.5
C7	C6	H6A	108.2	109.4
C6	C7	H7	108.0	109.5
C6	C7	H7A	108.0	109.4
C8	C7	H7	108.0	109.5
C8	C7	H7A	108.0	109.5
C7	C8	H8	110.3	109.5
C7	C8	H8A	110.2	109.5
H1	C1	H1A	108.8	109.5
HN1	N1	HN1A	109.4	120.0
H2	C2	H2A	111.0	109.5
HN2	N2	HN2A	109.5	120.0
H3	C3	H3A	110.9	109.5
H4	C4	H4A	111.0	109.5
H5	C5	H5A	110.9	109.5
H6	C6	H6A	110.7	109.5
H7	C7	H7A	110.9	109.5
H8	C8	H8A	108.7	109.5

Torsion Angles for O59

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O3	S1	174.7	180.0
O3	C1	C2	H1	240.0	240.0
O3	C1	C2	H1A	120.0	120.0
C1	C2	C3	C4	187.0	180.0
C3	C2	C1	H2	240.0	240.1
C3	C2	C1	H2A	120.0	120.0
C1	C2	C3	H3	307.0	300.0
C1	C2	C3	H3A	67.0	60.0
H1	C1	C2	H1A	240.0	240.0
H2	C2	C1	H2A	240.0	240.0
O3	C1	C2	C3	291.3	180.0
C2	C1	O3	H1	120.0	120.0
C2	C1	O3	H1A	240.0	240.0
O3	C1	C2	H2	51.3	300.0
O3	C1	C2	H2A	171.3	60.0
N1	S1	O3	C1	40.9	75.0
O1	S1	O3	C1	283.6	321.4
O2	S1	O3	C1	156.8	188.5
H1	C1	O3	H1A	120.0	120.0
C1	O3	S1	N1	40.9	75.0
O1	S1	N1	O2	227.7	227.1
O1	S1	N1	O3	114.5	113.6
O2	S1	N1	O3	246.7	246.5
HN1	N1	S1	HN1A	240.0	179.9
C1	O3	S1	O1	283.6	321.4
N1	S1	O1	O2	126.0	123.0
N1	S1	O1	O3	242.8	245.9
O1	S1	N1	HN1	180.0	113.5
O1	S1	N1	HN1A	300.0	293.6
O2	S1	O1	O3	116.7	122.9
C1	O3	S1	O2	156.8	188.5
N1	S1	O2	O1	233.6	237.0
N1	S1	O2	O3	116.5	114.1
O2	S1	N1	HN1	312.3	246.4
O2	S1	N1	HN1A	72.2	66.5
O1	S1	O2	O3	243.0	237.1
S1	O3	C1	H1	54.7	60.0
S1	O3	C1	H1A	294.7	300.0
N1	S1	O3	O1	117.2	113.6
N1	S1	O3	O2	244.1	246.5
O3	S1	N1	HN1	65.5	360.0
O3	S1	N1	HN1A	185.5	180.0
O1	S1	O3	O2	126.8	132.9
C3	C2	C1	O3	291.3	180.0
C3	C2	C1	H1	51.3	300.0
C3	C2	C1	H1A	171.3	60.0
C1	C2	C3	H2	120.0	120.0
C1	C2	C3	H2A	240.0	240.0
C2	C3	C4	C5	290.2	180.0
C4	C3	C2	H3	240.0	240.0
C4	C3	C2	H3A	120.0	120.0
C2	C3	C4	H4	50.3	300.0
C2	C3	C4	H4A	170.3	60.0
H2	C2	C3	H2A	120.0	120.0
H3	C3	C2	H3A	240.0	240.0
O4	S2	N2	O5	245.8	246.5
O4	S2	N2	O6	113.3	113.6
N2	S2	O4	C8	45.9	74.9
O5	S2	N2	O6	227.6	227.1
HN2	N2	S2	HN2A	240.0	179.9
N2	S2	O4	O5	116.6	113.5
N2	S2	O4	O6	244.2	246.4
O4	S2	N2	HN2	180.0	0.0
O4	S2	N2	HN2A	300.0	180.1
O5	S2	O4	O6	127.6	132.9
S2	O4	C8	C7	175.0	180.0
S2	O4	C8	H8	295.0	300.1
S2	O4	C8	H8A	55.0	60.0
N2	S2	O5	O4	243.0	245.9
N2	S2	O5	O6	125.8	122.9
O5	S2	N2	HN2	294.2	113.5
O5	S2	N2	HN2A	54.2	293.6
O4	S2	O5	O6	242.8	237.1
O5	S2	O4	C8	289.3	321.4
N2	S2	O6	O4	116.5	114.2
N2	S2	O6	O5	234.0	237.1
O6	S2	N2	HN2	66.7	246.4
O6	S2	N2	HN2A	186.7	66.5
O4	S2	O6	O5	117.5	122.9
O6	S2	O4	C8	161.7	188.5
C4	C3	C2	H2	67.0	60.0
C4	C3	C2	H2A	307.0	300.0
C2	C3	C4	H3	120.0	120.0
C2	C3	C4	H3A	240.0	240.0
C3	C4	C5	C6	167.6	180.0
C5	C4	C3	H4	240.0	240.0
C5	C4	C3	H4A	120.0	119.9
C3	C4	C5	H5	287.6	300.0
C3	C4	C5	H5A	47.6	60.0
H3	C3	C4	H3A	120.0	120.0
H4	C4	C3	H4A	240.0	240.0
C5	C4	C3	H3	170.2	60.0
C5	C4	C3	H3A	50.2	300.0
C3	C4	C5	H4	120.0	120.0
C3	C4	C5	H4A	240.0	240.0
C4	C5	C6	C7	167.6	180.0
C6	C5	C4	H5	240.0	240.0
C6	C5	C4	H5A	120.0	120.0
C4	C5	C6	H6	287.6	300.0
C4	C5	C6	H6A	47.6	60.0
H4	C4	C5	H4A	120.0	120.0
H5	C5	C4	H5A	240.0	240.0
C8	O4	S2	O5	289.3	321.4
C8	O4	S2	O6	161.7	188.5
C6	C7	C8	O4	81.7	180.1
O4	C8	C7	H7	321.7	60.0
O4	C8	C7	H7A	201.7	300.0
C7	C8	O4	H8	240.0	240.0
C7	C8	O4	H8A	120.0	120.0
H8	C8	O4	H8A	240.0	240.0
C6	C5	C4	H4	47.6	60.0
C6	C5	C4	H4A	287.6	300.0
C4	C5	C6	H5	120.0	120.0
C4	C5	C6	H5A	240.0	240.0
C5	C6	C7	C8	194.3	180.0
C7	C6	C5	H6	240.0	240.0
C7	C6	C5	H6A	120.0	120.0
C5	C6	C7	H7	314.3	300.0
C5	C6	C7	H7A	74.4	60.0
H5	C5	C6	H5A	120.0	120.0
H6	C6	C5	H6A	240.0	240.0
O4	C8	C7	C6	81.7	180.1
C7	C6	C5	H5	47.6	60.0
C7	C6	C5	H5A	287.6	300.0
C5	C6	C7	H6	120.0	120.0
C5	C6	C7	H6A	240.0	240.0
C8	C7	C6	H7	240.0	240.0
C8	C7	C6	H7A	120.0	120.0
C6	C7	C8	H8	321.7	60.0
C6	C7	C8	H8A	201.7	300.0
H6	C6	C7	H6A	120.0	120.0
H7	C7	C6	H7A	240.0	240.0
O4	C8	C7	H8	120.0	120.0
O4	C8	C7	H8A	240.0	240.0
C8	C7	C6	H6	74.3	60.0
C8	C7	C6	H6A	314.3	300.0
C6	C7	C8	H7	120.0	120.0
C6	C7	C8	H7A	240.0	240.1
H7	C7	C8	H7A	120.0	120.0
H8	C8	C7	H8A	120.0	120.0
C2	C1	H1	O3	241.6	240.0
H1	C1	C2	C3	51.3	300.0
C2	C1	H1	H1A	120.8	120.0
H1	C1	C2	H2	171.3	60.0
H1	C1	C2	H2A	291.3	180.0
H1	C1	O3	S1	54.7	60.0
O3	C1	H1	H1A	239.2	240.0
C2	C1	H1A	O3	118.4	120.0
H1A	C1	C2	C3	171.3	60.0
C2	C1	H1A	H1	239.2	240.0
H1A	C1	C2	H2	291.3	180.0
H1A	C1	C2	H2A	51.3	300.0
H1A	C1	O3	S1	294.7	300.0
O3	C1	H1A	H1	120.8	120.0
HN1	N1	S1	O1	180.0	113.5
HN1	N1	S1	O2	312.3	246.4
HN1	N1	S1	O3	65.5	360.0
S1	N1	HN1	HN1A	120.0	180.1
HN1A	N1	S1	O1	300.0	293.6
HN1A	N1	S1	O2	72.2	66.5
HN1A	N1	S1	O3	185.5	180.0
S1	N1	HN1A	HN1	240.0	179.9
H2	C2	C1	O3	51.3	300.0
C1	C2	H2	C3	236.2	240.0
H2	C2	C1	H1	171.3	60.0
H2	C2	C1	H1A	291.3	180.0
C1	C2	H2	H2A	118.1	120.0
H2	C2	C3	C4	67.0	60.0
C3	C2	H2	H2A	241.9	240.0
H2	C2	C3	H3	187.0	180.0
H2	C2	C3	H3A	307.0	300.0
H2A	C2	C1	O3	171.3	60.0
C1	C2	H2A	C3	123.8	120.0
H2A	C2	C1	H1	291.3	180.0
H2A	C2	C1	H1A	51.3	300.0
C1	C2	H2A	H2	241.9	240.0
H2A	C2	C3	C4	307.0	300.0
C3	C2	H2A	H2	118.1	120.0
H2A	C2	C3	H3	67.0	60.0
H2A	C2	C3	H3A	187.0	180.0
HN2	N2	S2	O4	180.0	0.0
HN2	N2	S2	O5	294.2	113.5
HN2	N2	S2	O6	66.7	246.4
S2	N2	HN2	HN2A	120.0	180.1
HN2A	N2	S2	O4	300.0	180.1
HN2A	N2	S2	O5	54.2	293.6
HN2A	N2	S2	O6	186.7	66.5
S2	N2	HN2A	HN2	240.0	179.9
C2	C3	H3	C4	236.2	240.0
H3	C3	C2	H2	187.0	180.0
H3	C3	C2	H2A	67.0	60.0
C2	C3	H3	H3A	118.1	120.0
H3	C3	C4	C5	170.2	60.0
C4	C3	H3	H3A	241.9	240.0
H3	C3	C4	H4	290.2	180.0
H3	C3	C4	H4A	50.3	300.0
C2	C3	H3A	C4	123.8	120.0
H3A	C3	C2	H2	307.0	300.0
H3A	C3	C2	H2A	187.0	180.0
C2	C3	H3A	H3	241.9	240.0
H3A	C3	C4	C5	50.2	300.0
C4	C3	H3A	H3	118.1	120.0
H3A	C3	C4	H4	170.2	60.0
H3A	C3	C4	H4A	290.2	180.0
C3	C4	H4	C5	235.9	240.0
H4	C4	C3	H3	290.2	180.0
H4	C4	C3	H3A	170.2	60.0
C3	C4	H4	H4A	118.0	120.0
H4	C4	C5	C6	47.6	60.0
C5	C4	H4	H4A	242.0	240.0
H4	C4	C5	H5	167.6	180.0
H4	C4	C5	H5A	287.6	300.0
C3	C4	H4A	C5	124.1	120.0
H4A	C4	C3	H3	50.3	300.0
H4A	C4	C3	H3A	290.2	180.0
C3	C4	H4A	H4	242.0	240.0
H4A	C4	C5	C6	287.6	300.0
C5	C4	H4A	H4	118.0	120.0
H4A	C4	C5	H5	47.6	60.0
H4A	C4	C5	H5A	167.6	180.0
C4	C5	H5	C6	236.2	240.0
H5	C5	C4	H4	167.6	180.0
H5	C5	C4	H4A	47.6	60.0
C4	C5	H5	H5A	118.1	120.0
H5	C5	C6	C7	47.6	60.0
C6	C5	H5	H5A	241.9	240.0
H5	C5	C6	H6	167.6	180.0
H5	C5	C6	H6A	287.6	300.0
C4	C5	H5A	C6	123.8	120.0
H5A	C5	C4	H4	287.6	300.0
H5A	C5	C4	H4A	167.6	180.0
C4	C5	H5A	H5	241.9	240.0
H5A	C5	C6	C7	287.6	300.0
C6	C5	H5A	H5	118.1	120.0
H5A	C5	C6	H6	47.6	60.0
H5A	C5	C6	H6A	167.6	180.0
C5	C6	H6	C7	236.8	240.0
H6	C6	C5	H5	167.6	180.0
H6	C6	C5	H5A	47.6	60.0
C5	C6	H6	H6A	118.4	120.0
H6	C6	C7	C8	74.3	60.0
C7	C6	H6	H6A	241.6	240.0
H6	C6	C7	H7	194.3	180.0
H6	C6	C7	H7A	314.3	300.0
C5	C6	H6A	C7	123.2	120.0
H6A	C6	C5	H5	287.6	300.0
H6A	C6	C5	H5A	167.6	180.0
C5	C6	H6A	H6	241.6	240.0
H6A	C6	C7	C8	314.3	300.0
C7	C6	H6A	H6	118.4	120.0
H6A	C6	C7	H7	74.3	60.0
H6A	C6	C7	H7A	194.3	180.0
C6	C7	H7	C8	236.3	240.0
H7	C7	C6	H6	194.3	180.0
H7	C7	C6	H6A	74.3	60.0
C6	C7	H7	H7A	118.1	120.0
C8	C7	H7	H7A	241.9	240.0
H7	C7	C8	H8	201.7	300.0
H7	C7	C8	H8A	81.7	180.0
C6	C7	H7A	C8	123.7	120.0
H7A	C7	C6	H6	314.3	300.0
H7A	C7	C6	H6A	194.3	180.0
C6	C7	H7A	H7	241.8	240.0
C8	C7	H7A	H7	118.1	120.0
H7A	C7	C8	H8	81.7	180.0
H7A	C7	C8	H8A	321.7	60.0
O4	C8	H8	C7	241.9	240.0
O4	C8	H8	H8A	121.0	120.0
H8	C8	C7	H7	201.7	300.0
H8	C8	C7	H7A	81.7	180.0
C7	C8	H8	H8A	239.0	240.0
O4	C8	H8A	C7	118.1	120.0
O4	C8	H8A	H8	239.1	240.0
H8A	C8	C7	H7	81.7	180.0
H8A	C8	C7	H7A	321.7	60.0
C7	C8	H8A	H8	121.0	120.0