Atom Nomenclature for O4S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O4S

Atom Name (V3) Atom Name (V2)
C2 C1
C3 C2
C11 C3
C12 C4
C13 C5
C15 C6
C19 C7
C20 C8
C21 C9
C22 C10
C23 C11
C24 C12
C25 C13
C26 C14
C27 C15
C28 C16
C29 C17
C30 C18
C31 C19
C32 C20
C33 C21
C34 C22
C35 C23
C5 C24
C6 C25
C7 C26
C8 C27
C9 C28
N1 N1
N10 N2
N17 N3
N4 N4
O14 O1
O16 O2
O18 O3
H39 H1
H38 H2
H40 H3
H41 H4
H43 H5
H44 H6
H45 H7
H46 H8
H47 H9
H48 H10
H50 H11
H49 H12
H51 H13
H52 H14
H53 H15
H54 H16
H55 H17
H56 H18
H57 H19
H58 H20
H60 H21
H59 H22
H61 H23
H62 H24
H64 H25
H63 H26
H65 H27
H66 H28
H67 H29
H69 H30
H68 H31
H36 H32
H37 H33
H42 H34