PDB Chemical Component O4D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for O4D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C16 C17 1.432 1.410
C16 C15 1.376 1.349
C17 C14 1.389 1.349
C15 N6 1.416 1.365
C14 N6 1.400 1.366
N6 C1 1.389 1.402
C21 C8 1.519 1.507
C1 C5 1.442 1.463
C1 N4 1.346 1.306
C8 C5 1.432 1.398
C8 C12 1.394 1.371
C5 C3 1.443 1.409
N4 N2 1.353 1.398
O18 C10 1.226 1.213
C12 C13 1.440 1.388
C26 C23 1.559 1.530
C26 N20 1.483 1.465
C3 N2 1.403 1.368
C3 N7 1.366 1.327
N2 C9 1.480 1.465
C10 N20 1.390 1.348
C10 C9 1.516 1.508
C23 C22 1.554 1.530
C13 N7 1.351 1.316
C13 C29 1.487 1.507
C22 N11 1.515 1.469
C25 N11 1.513 1.470
C25 C27 1.547 1.531
N11 C24 1.564 1.470
C27 O19 1.357 1.430
C24 C28 1.591 1.531
O19 C28 1.341 1.430
C12 H32 1.080 1.080
C14 H33 1.080 1.080
C15 H34 1.080 1.080
C16 H35 1.080 1.080
C17 H36 1.080 1.080
C21 H39 1.100 1.090
C21 H40 1.100 1.090
C21 H38 1.100 1.090
C22 H41 1.100 1.090
C22 H42 1.101 1.089
C23 H43 1.100 1.089
C23 H44 1.100 1.090
C24 H46 1.100 1.090
C24 H45 1.101 1.089
C25 H48 1.100 1.090
C25 H47 1.100 1.090
C26 H50 1.100 1.091
C26 H49 1.100 1.090
C27 H51 1.100 1.090
C27 H52 1.100 1.090
C28 H54 1.100 1.090
C28 H53 1.100 1.090
C29 H55 1.100 1.090
C29 H57 1.100 1.090
C29 H56 1.100 1.090
C9 H30 1.100 1.090
C9 H31 1.100 1.090
N20 H37 1.000 0.971

Bond Angles for O4D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C17 C16 H35 125.8 126.3
C16 C17 H36 125.9 126.3
C16 C15 N6 106.9 108.3
C16 C15 H34 126.6 125.8
C17 C14 N6 106.8 108.2
C17 C14 H33 126.6 125.9
C14 N6 C15 109.6 108.7
N6 C15 H34 126.6 125.9
N6 C14 H33 126.6 125.9
C21 C8 C5 124.1 120.9
C8 C21 H39 109.5 109.5
C8 C21 H40 109.5 109.4
C8 C21 H38 109.5 109.4
C5 C1 N4 112.0 107.5
C1 C5 C3 102.8 106.4
C1 N4 N2 107.2 110.1
C8 C12 H32 119.6 120.2
C5 C3 N2 106.9 106.6
C5 C3 N7 126.9 119.8
C12 C13 N7 125.8 121.5
C12 C13 C29 120.0 119.2
C13 C12 H32 119.5 120.2
C26 C23 H43 108.7 109.5
C26 C23 H44 108.7 109.5
C26 N20 C10 121.0 120.0
N20 C26 H50 109.5 109.5
N20 C26 H49 109.5 109.4
C26 N20 H37 119.5 120.0
N2 C3 N7 126.1 133.5
C3 N2 C9 128.8 125.3
C3 N7 C13 112.4 121.5
N2 C9 H30 110.6 109.5
N2 C9 H31 110.6 109.5
C9 C10 N20 117.9 120.0
C10 N20 H37 119.5 120.0
C10 C9 H30 110.6 109.5
C10 C9 H31 110.6 109.4
C23 C22 N11 108.9 109.5
C23 C22 H41 109.6 109.4
C23 C22 H42 109.6 109.5
C29 C13 N7 114.0 119.3
C13 C29 H55 109.5 109.4
C13 C29 H57 109.5 109.4
C13 C29 H56 109.5 109.5
C22 N11 C25 107.3 111.0
C22 N11 C24 115.0 111.0
N11 C22 H41 109.6 109.4
N11 C22 H42 109.6 109.4
C27 C25 N11 111.4 109.3
N11 C25 H48 109.0 109.5
N11 C25 H47 109.0 109.5
C25 C27 O19 107.5 109.2
C27 C25 H48 109.0 109.5
C27 C25 H47 109.0 109.6
C25 C27 H51 110.0 109.5
C25 C27 H52 110.0 109.5
N11 C24 H46 108.0 109.5
N11 C24 H45 107.9 109.6
C27 O19 C28 115.1 113.8
O19 C27 H51 109.9 109.5
O19 C27 H52 110.0 109.5
C28 C24 H46 108.0 109.5
C28 C24 H45 108.0 109.5
C24 C28 H54 108.3 109.5
C24 C28 H53 108.3 109.5
O19 C28 H54 108.3 109.5
O19 C28 H53 108.3 109.6
H39 C21 H40 109.5 109.5
H39 C21 H38 109.4 109.5
H40 C21 H38 109.5 109.5
H41 C22 H42 109.5 109.5
H43 C23 H44 109.5 109.5
H46 C24 H45 109.5 109.5
H48 C25 H47 109.5 109.5
H50 C26 H49 109.5 109.5
H51 C27 H52 109.5 109.6
H54 C28 H53 109.5 109.5
H55 C29 H57 109.5 109.5
H55 C29 H56 109.4 109.5
H57 C29 H56 109.4 109.5
H30 C9 H31 109.5 109.4

Torsion Angles for O4D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C17 C16 C15 N6 359.9 359.6
C17 C16 C15 H34 179.9 180.0
C16 C17 C14 N6 0.2 0.1
C16 C17 C14 H33 180.2 179.7
C14 N6 C15 C16 0.2 0.4
N6 C15 C16 H34 180.0 179.6
C17 C14 N6 C15 359.8 359.7
N6 C14 C17 H33 180.0 180.3
C16 C15 N6 H34 180.0 180.4
C15 N6 C14 H33 179.7 180.1
C16 C15 N6 C14 0.2 0.4
C17 C14 N6 H33 180.0 179.7
C14 N6 C15 H34 180.2 180.0
C21 C8 C12 H32 0.3 0.0
H39 C21 C8 H40 239.9 240.0
H39 C21 C8 H38 120.0 120.0
H40 C21 C8 H38 240.0 240.1
C21 C8 C5 C1 356.8 360.0
C5 C1 N4 N2 1.9 360.0
C1 C5 C3 N2 2.5 0.1
C1 C5 C3 N7 183.4 180.0
N4 C1 C5 C3 357.3 360.0
C5 C8 C21 H39 90.2 90.0
C5 C8 C21 H40 210.3 210.0
C5 C8 C21 H38 330.3 330.0
C8 C5 C1 N4 177.6 180.0
C5 C8 C12 H32 179.9 180.0
C8 C5 C3 N2 182.2 180.0
C8 C5 C3 N7 3.1 359.9
C8 C12 C13 N7 2.6 360.0
C13 C12 C8 H32 180.0 180.0
C3 C5 C1 N4 357.3 360.0
N2 C3 C5 N7 179.1 180.1
C5 C3 N2 C9 178.0 180.0
C5 C3 N7 C13 359.1 0.1
N4 N2 C3 N7 177.6 180.0
N4 N2 C9 H30 44.3 150.1
N4 N2 C9 H31 165.8 30.1
O18 C10 N20 H37 176.6 180.0
O18 C10 C9 H30 212.5 120.1
O18 C10 C9 H31 91.1 240.0
C8 C12 C13 H32 180.0 180.0
C3 N7 C13 C12 358.0 360.0
C29 C13 C12 N7 185.0 180.0
C12 C13 C29 H55 175.5 90.0
C12 C13 C29 H57 295.5 210.0
C12 C13 C29 H56 55.5 330.0
C26 C23 C22 N11 215.2 180.0
C26 C23 C22 H41 335.1 300.0
C26 C23 C22 H42 95.3 60.0
H43 C23 C26 H44 240.9 120.0
N20 C26 C23 H43 68.4 60.0
N20 C26 C23 H44 187.5 300.0
C9 C10 N20 C26 179.2 180.0
C10 N20 C26 H37 180.0 180.0
H50 C26 N20 H49 120.1 119.9
C1 N4 N2 C3 359.8 0.1
C5 C3 N2 N7 180.9 179.9
N2 C3 N7 C13 180.2 180.0
C3 N2 C9 H30 224.9 329.9
C3 N2 C9 H31 346.3 209.9
C5 C3 N7 N2 178.9 180.1
C12 C13 N7 C3 358.0 360.0
N7 C3 N2 C9 357.1 0.1
C29 C13 N7 C3 173.2 180.0
C1 N4 N2 C9 180.3 179.9
C9 N2 C3 N7 357.1 0.1
N2 C9 C10 N20 149.4 180.0
C10 C9 N2 H30 240.7 120.0
C10 C9 N2 H31 119.3 240.0
H30 C9 N2 H31 238.5 120.0
C10 N20 C26 H50 162.0 60.0
C10 N20 C26 H49 42.0 300.1
C26 N20 C10 H37 180.0 180.0
N20 C10 C9 H30 30.1 300.0
N20 C10 C9 H31 268.7 60.0
C26 N20 C10 C9 179.2 180.0
C3 N2 C9 C10 105.6 89.9
N2 C9 C10 H30 119.3 239.9
N2 C9 C10 H31 240.7 120.0
C9 C10 N20 H37 359.2 0.0
H30 C9 C10 H31 121.4 240.1
C23 C22 N11 C25 283.5 190.0
C23 C22 N11 C24 156.3 66.3
N11 C22 C23 H41 240.1 240.1
N11 C22 C23 H42 119.9 120.0
H41 C22 C23 H42 239.8 239.9
C12 C13 N7 C29 184.8 180.0
N7 C13 C12 H32 182.6 180.0
N7 C13 C29 H55 360.0 270.0
N7 C13 C29 H57 120.0 30.0
N7 C13 C29 H56 240.0 150.0
C12 C13 C29 N7 175.5 180.0
C29 C13 C12 H32 7.7 360.0
C3 N7 C13 C29 173.2 180.0
H55 C29 C13 H57 240.0 240.1
H55 C29 C13 H56 120.0 120.0
H57 C29 C13 H56 240.0 239.9
C23 C22 N11 H41 119.9 119.9
C23 C22 N11 H42 240.1 240.0
C27 C25 N11 C22 195.8 177.6
C22 N11 C25 H48 316.1 57.7
C22 N11 C25 H47 75.5 297.6
C22 N11 C24 H46 263.0 62.5
C22 N11 C24 H45 21.2 302.4
H41 C22 N11 H42 120.2 120.0
C22 N11 C25 C24 231.9 236.2
C25 N11 C22 H41 163.6 70.0
C25 N11 C22 H42 43.4 310.0
N11 C25 C27 O19 62.1 56.9
C27 C25 N11 H48 239.7 119.9
C27 C25 N11 H47 120.3 240.0
N11 C25 C27 H51 181.7 176.8
N11 C25 C27 H52 302.4 296.9
C25 N11 C24 H46 139.0 298.7
C25 N11 C24 H45 257.2 178.6
H48 C25 N11 H47 240.6 120.1
C22 N11 C25 C27 195.8 177.6
N11 C25 C27 H48 120.3 240.1
N11 C25 C27 H47 239.7 120.0
C25 C27 O19 C28 287.0 301.3
O19 C27 C25 H51 240.3 240.1
O19 C27 C25 H52 119.7 120.0
H48 C25 C27 H47 119.4 239.9
H51 C27 C25 H52 239.4 239.9
C22 N11 C24 C25 124.0 123.8
C24 N11 C22 H41 36.4 306.4
C24 N11 C22 H42 276.2 186.3
C28 C24 N11 H46 239.1 119.9
C28 C24 N11 H45 120.9 240.0
N11 C24 C28 H54 96.8 63.1
N11 C24 C28 H53 215.4 183.2
H46 C24 N11 H45 241.8 120.1
O19 C27 C25 N11 62.1 56.9
O19 C27 C25 H48 301.8 176.8
O19 C27 C25 H47 182.4 296.9
C25 C27 O19 H51 119.7 119.9
C25 C27 O19 H52 240.3 240.0
C27 O19 C28 H54 292.6 298.7
C27 O19 C28 H53 174.0 178.6
H51 C27 O19 H52 120.6 120.2
C22 N11 C24 C28 142.1 182.4
N11 C24 C28 H46 120.9 240.1
N11 C24 C28 H45 239.1 120.0
C27 O19 C28 C24 53.3 58.7
O19 C28 C24 H54 239.3 240.1
O19 C28 C24 H53 120.7 120.0
H46 C24 C28 H45 118.2 239.9
H54 C28 C24 H53 241.3 239.9
C28 O19 C27 H51 167.4 181.4
C28 O19 C27 H52 46.7 61.3
O19 C28 C24 H46 215.2 63.1
O19 C28 C24 H45 97.0 183.2
C24 C28 O19 H54 120.7 120.0
C24 C28 O19 H53 239.3 240.0
H54 C28 O19 H53 118.7 120.1
H32 C12 C13 N7 182.6 180.0
H32 C12 C13 C29 7.7 360.0
C17 C14 H33 N6 179.9 180.4
H33 C14 N6 C15 179.7 180.1
C16 C15 H34 N6 180.0 179.6
H35 C16 C17 H36 360.0 0.1
H35 C16 C15 N6 179.9 179.8
H35 C16 C15 H34 359.9 0.2
H36 C17 C16 H35 360.0 0.1
H36 C17 C14 N6 180.2 180.0
H36 C17 C14 H33 0.2 359.6
H39 C21 C8 C5 90.2 90.0
C8 C21 H39 H40 120.0 120.0
C8 C21 H39 H38 240.0 240.0
H40 C21 H39 H38 120.0 120.0
H40 C21 C8 C5 210.3 210.0
C8 C21 H40 H39 239.9 240.0
C8 C21 H40 H38 120.0 119.9
H39 C21 H40 H38 240.1 239.9
H38 C21 C8 C5 330.3 330.0
C8 C21 H38 H39 120.0 120.0
C8 C21 H38 H40 240.0 240.1
H39 C21 H38 H40 120.0 120.1
C23 C22 H41 N11 240.5 240.0
C23 C22 H41 H42 120.3 120.1
H41 C22 N11 C25 163.6 70.0
H41 C22 N11 C24 36.4 306.4
N11 C22 H41 H42 239.8 240.0
C23 C22 H42 N11 119.5 120.0
C23 C22 H42 H41 239.7 240.0
H42 C22 N11 C25 43.4 310.0
H42 C22 N11 C24 276.2 186.3
N11 C22 H42 H41 120.2 120.0
C26 C23 H43 H44 118.6 240.0
H43 C23 C22 N11 94.8 300.0
H43 C23 C22 H41 214.7 59.9
H43 C23 C22 H42 334.9 180.0
C26 C23 H44 H43 241.4 120.0
H44 C23 C22 N11 335.7 60.0
H44 C23 C22 H41 95.6 180.0
H44 C23 C22 H42 215.8 300.1
N11 C24 H46 H45 117.3 239.8
C28 C24 H46 H45 242.7 120.1
H46 C24 C28 H54 335.9 183.0
H46 C24 C28 H53 94.6 303.1
N11 C24 H45 H46 242.7 120.1
C28 C24 H45 H46 117.3 239.9
H45 C24 C28 H54 217.6 303.1
H45 C24 C28 H53 336.3 63.2
C27 C25 H48 N11 121.7 240.2
N11 C25 H48 H47 119.1 240.0
H48 C25 C27 O19 301.8 176.8
C27 C25 H48 H47 240.9 120.2
H48 C25 C27 H51 61.5 296.7
H48 C25 C27 H52 182.1 56.8
C27 C25 H47 N11 238.3 119.8
N11 C25 H47 H48 240.9 120.0
H47 C25 C27 O19 182.4 296.9
C27 C25 H47 H48 119.1 239.9
H47 C25 C27 H51 302.0 56.8
H47 C25 C27 H52 62.7 177.0
H50 C26 C23 H43 188.4 180.0
H50 C26 C23 H44 307.5 60.0
H50 C26 N20 C10 162.0 60.0
N20 C26 H50 H49 239.9 240.1
H50 C26 N20 H37 342.0 240.0
H49 C26 C23 H43 308.5 300.0
H49 C26 C23 H44 67.5 180.0
H49 C26 N20 C10 42.0 300.1
N20 C26 H49 H50 120.1 119.9
H49 C26 N20 H37 221.9 120.0
H51 C27 C25 N11 181.7 176.8
C25 C27 H51 O19 241.9 240.3
H51 C27 C25 H48 61.5 296.7
H51 C27 C25 H47 302.0 56.8
C25 C27 H51 H52 120.9 120.1
H51 C27 O19 C28 167.4 181.4
O19 C27 H51 H52 239.1 239.9
H52 C27 C25 N11 302.4 296.9
C25 C27 H52 O19 118.1 119.8
H52 C27 C25 H48 182.1 56.8
H52 C27 C25 H47 62.7 177.0
C25 C27 H52 H51 239.1 239.9
H52 C27 O19 C28 46.7 61.3
O19 C27 H52 H51 120.9 120.1
H54 C28 C24 H46 335.9 183.0
H54 C28 C24 H45 217.6 303.1
C24 C28 H54 H53 117.9 120.1
O19 C28 H54 H53 242.1 239.9
H53 C28 C24 H46 94.6 303.1
H53 C28 C24 H45 336.3 63.2
C24 C28 H53 H54 242.1 239.9
O19 C28 H53 H54 117.9 120.1
H55 C29 C13 N7 360.0 270.0
C13 C29 H55 H57 120.0 119.9
C13 C29 H55 H56 240.0 240.0
H57 C29 H55 H56 120.0 120.0
H57 C29 C13 N7 120.0 30.0
C13 C29 H57 H55 240.0 240.1
C13 C29 H57 H56 120.0 120.1
H55 C29 H57 H56 240.0 240.0
H56 C29 C13 N7 240.0 150.0
C13 C29 H56 H55 120.0 120.0
C13 C29 H56 H57 240.0 240.0
H55 C29 H56 H57 120.0 120.0
N2 C9 H30 H31 122.1 240.0
H30 C9 C10 N20 30.1 300.0
C10 C9 H30 H31 237.9 119.9
N2 C9 H31 H30 237.9 120.0
H31 C9 C10 N20 268.7 60.0
C10 C9 H31 H30 122.1 240.1
C26 N20 H37 C10 180.0 180.0
H37 N20 C26 H50 342.0 240.0
H37 N20 C26 H49 221.9 120.0