PDB Chemical Component O3V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O3V
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C26 |
C27 |
1.368 |
1.338 |
| C26 |
C25 |
1.429 |
1.375 |
| C27 |
S28 |
1.722 |
1.706 |
| O14 |
C6 |
1.228 |
1.214 |
| C25 |
C24 |
1.377 |
1.368 |
| C7 |
C6 |
1.539 |
1.507 |
| C7 |
C8 |
1.509 |
1.531 |
| C6 |
C5 |
1.485 |
1.415 |
| C24 |
S28 |
1.723 |
1.758 |
| C24 |
C4 |
1.456 |
1.466 |
| C4 |
C5 |
1.406 |
1.415 |
| C4 |
C3 |
1.418 |
1.415 |
| C5 |
C10 |
1.459 |
1.409 |
| C22 |
C8 |
1.539 |
1.530 |
| C8 |
C21 |
1.520 |
1.530 |
| C8 |
C9 |
1.545 |
1.529 |
| O23 |
C13 |
1.306 |
1.354 |
| C3 |
C13 |
1.378 |
1.388 |
| C3 |
C2 |
1.452 |
1.472 |
| C10 |
C9 |
1.538 |
1.511 |
| C10 |
N1 |
1.352 |
1.310 |
| C13 |
N11 |
1.402 |
1.347 |
| C2 |
N1 |
1.360 |
1.345 |
| C2 |
N12 |
1.312 |
1.319 |
| N11 |
N12 |
1.348 |
1.399 |
| N11 |
C15 |
1.448 |
1.400 |
| C16 |
C15 |
1.388 |
1.389 |
| C16 |
C17 |
1.389 |
1.382 |
| C15 |
C20 |
1.407 |
1.389 |
| C17 |
C18 |
1.388 |
1.383 |
| C20 |
C19 |
1.374 |
1.381 |
| C18 |
C19 |
1.400 |
1.383 |
| C7 |
H29 |
1.100 |
1.089 |
| C7 |
H30 |
1.100 |
1.090 |
| C17 |
H34 |
1.080 |
1.079 |
| C18 |
H35 |
1.080 |
1.080 |
| C19 |
H36 |
1.080 |
1.080 |
| C20 |
H37 |
1.080 |
1.080 |
| C21 |
H39 |
1.100 |
1.090 |
| C21 |
H38 |
1.100 |
1.090 |
| C21 |
H40 |
1.100 |
1.090 |
| C22 |
H41 |
1.100 |
1.089 |
| C22 |
H42 |
1.100 |
1.090 |
| C22 |
H43 |
1.100 |
1.091 |
| C25 |
H45 |
1.080 |
1.080 |
| C26 |
H46 |
1.080 |
1.080 |
| C27 |
H47 |
1.080 |
1.080 |
| C16 |
H33 |
1.080 |
1.080 |
| C9 |
H32 |
1.100 |
1.090 |
| C9 |
H31 |
1.100 |
1.090 |
| O23 |
H44 |
0.950 |
0.967 |
Bond Angles for O3V
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C26 |
C27 |
S28 |
111.8 |
111.0 |
| C27 |
C26 |
H46 |
123.4 |
122.4 |
| C26 |
C27 |
H47 |
124.1 |
124.5 |
| C26 |
C25 |
C24 |
111.3 |
113.2 |
| C26 |
C25 |
H45 |
124.4 |
123.4 |
| C27 |
S28 |
C24 |
91.4 |
91.6 |
| S28 |
C27 |
H47 |
124.1 |
124.5 |
| C25 |
C24 |
S28 |
112.4 |
109.1 |
| C24 |
C25 |
H45 |
124.3 |
123.3 |
| C7 |
C8 |
C21 |
107.0 |
109.5 |
| C7 |
C8 |
C9 |
108.0 |
109.1 |
| C8 |
C7 |
H29 |
109.4 |
109.5 |
| C8 |
C7 |
H30 |
109.4 |
109.5 |
| C6 |
C5 |
C10 |
117.1 |
120.9 |
| C4 |
C5 |
C10 |
119.3 |
120.0 |
| C4 |
C3 |
C13 |
136.0 |
135.0 |
| C5 |
C10 |
C9 |
121.9 |
119.8 |
| C5 |
C10 |
N1 |
124.5 |
121.7 |
| C22 |
C8 |
C9 |
108.3 |
109.6 |
| C21 |
C8 |
C9 |
111.7 |
109.5 |
| C8 |
C21 |
H39 |
109.5 |
109.4 |
| C8 |
C21 |
H38 |
109.5 |
109.5 |
| C8 |
C21 |
H40 |
109.5 |
109.5 |
| C8 |
C9 |
C10 |
113.3 |
109.5 |
| C8 |
C9 |
H32 |
108.5 |
109.5 |
| C8 |
C9 |
H31 |
108.5 |
109.5 |
| C3 |
C13 |
N11 |
106.2 |
107.5 |
| C3 |
C2 |
N1 |
124.0 |
119.5 |
| C3 |
C2 |
N12 |
111.7 |
106.6 |
| C9 |
C10 |
N1 |
113.5 |
118.5 |
| C10 |
C9 |
H32 |
108.5 |
109.4 |
| C10 |
C9 |
H31 |
108.5 |
109.5 |
| C2 |
N1 |
C10 |
115.7 |
122.6 |
| C13 |
N11 |
N12 |
111.8 |
109.9 |
| C13 |
N11 |
C15 |
128.7 |
125.0 |
| N1 |
C2 |
N12 |
124.2 |
133.9 |
| C2 |
N12 |
N11 |
106.1 |
109.4 |
| C16 |
C17 |
H34 |
119.6 |
120.0 |
| C15 |
C20 |
H37 |
120.7 |
120.1 |
| C17 |
C18 |
C19 |
120.9 |
120.1 |
| C18 |
C17 |
H34 |
119.6 |
120.0 |
| C17 |
C18 |
H35 |
119.5 |
119.9 |
| C20 |
C19 |
H36 |
120.3 |
120.0 |
| C19 |
C18 |
H35 |
119.5 |
120.0 |
| C18 |
C19 |
H36 |
120.3 |
119.9 |
| H29 |
C7 |
H30 |
109.4 |
109.6 |
| H39 |
C21 |
H38 |
109.5 |
109.5 |
| H39 |
C21 |
H40 |
109.4 |
109.5 |
| H38 |
C21 |
H40 |
109.5 |
109.5 |
| H41 |
C22 |
H42 |
109.5 |
109.4 |
| H41 |
C22 |
H43 |
109.5 |
109.5 |
| H42 |
C22 |
H43 |
109.4 |
109.4 |
| H32 |
C9 |
H31 |
109.5 |
109.4 |
Torsion Angles for O3V
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C27 |
C26 |
C25 |
C24 |
358.9 |
360.0 |
| C27 |
C26 |
C25 |
H45 |
178.9 |
179.7 |
| C26 |
C27 |
S28 |
C24 |
0.4 |
359.9 |
| S28 |
C27 |
C26 |
H47 |
180.0 |
180.1 |
| C26 |
C25 |
C24 |
S28 |
1.3 |
360.0 |
| C24 |
C25 |
C26 |
H45 |
180.0 |
180.2 |
| S28 |
C27 |
C26 |
H46 |
180.4 |
180.1 |
| C26 |
C27 |
S28 |
H47 |
180.0 |
179.9 |
| C25 |
C24 |
S28 |
C27 |
359.0 |
0.0 |
| C26 |
C25 |
C24 |
H45 |
180.0 |
179.8 |
| C27 |
S28 |
C24 |
C25 |
359.0 |
0.0 |
| C7 |
C6 |
C5 |
C10 |
352.5 |
359.6 |
| C22 |
C8 |
C7 |
C9 |
240.7 |
240.0 |
| C21 |
C8 |
C7 |
C9 |
120.3 |
119.9 |
| C7 |
C8 |
C21 |
H39 |
180.0 |
60.0 |
| C7 |
C8 |
C21 |
H38 |
300.0 |
180.0 |
| C7 |
C8 |
C21 |
H40 |
60.0 |
300.0 |
| C7 |
C8 |
C9 |
C10 |
48.0 |
300.5 |
| C7 |
C8 |
C9 |
H32 |
168.6 |
60.4 |
| C7 |
C8 |
C9 |
H31 |
287.4 |
180.4 |
| H29 |
C7 |
C8 |
H30 |
119.9 |
120.2 |
| C4 |
C5 |
C6 |
C10 |
170.0 |
180.0 |
| C6 |
C5 |
C10 |
C9 |
349.3 |
359.7 |
| C6 |
C5 |
C10 |
N1 |
167.7 |
179.8 |
| C24 |
S28 |
C27 |
H47 |
180.4 |
180.0 |
| S28 |
C24 |
C25 |
H45 |
181.3 |
180.2 |
| C6 |
C5 |
C4 |
C10 |
190.2 |
180.0 |
| C5 |
C4 |
C3 |
C13 |
183.7 |
179.9 |
| C4 |
C5 |
C10 |
C9 |
178.9 |
179.8 |
| C4 |
C5 |
C10 |
N1 |
357.4 |
359.8 |
| C4 |
C3 |
C13 |
N11 |
178.0 |
180.1 |
| C4 |
C3 |
C2 |
N1 |
358.4 |
359.9 |
| C4 |
C3 |
C2 |
N12 |
181.7 |
180.2 |
| C8 |
C9 |
C10 |
C5 |
349.8 |
30.5 |
| C9 |
C10 |
C5 |
N1 |
181.5 |
180.0 |
| C5 |
C10 |
C9 |
H32 |
229.2 |
270.5 |
| C5 |
C10 |
C9 |
H31 |
110.3 |
150.6 |
| C2 |
N1 |
C10 |
C5 |
2.3 |
0.0 |
| C7 |
C8 |
C22 |
C9 |
119.1 |
119.6 |
| C22 |
C8 |
C7 |
H29 |
55.2 |
178.7 |
| C22 |
C8 |
C7 |
H30 |
295.2 |
58.5 |
| C21 |
C8 |
C22 |
C9 |
237.8 |
239.8 |
| C22 |
C8 |
C21 |
H39 |
58.1 |
299.8 |
| C22 |
C8 |
C21 |
H38 |
178.2 |
59.8 |
| C22 |
C8 |
C21 |
H40 |
298.1 |
179.8 |
| C22 |
C8 |
C9 |
C10 |
169.6 |
60.4 |
| C22 |
C8 |
C9 |
H32 |
290.2 |
180.4 |
| C22 |
C8 |
C9 |
H31 |
49.0 |
300.4 |
| C7 |
C8 |
C21 |
C9 |
242.1 |
240.4 |
| C21 |
C8 |
C7 |
H29 |
294.8 |
58.5 |
| C21 |
C8 |
C7 |
H30 |
174.8 |
298.3 |
| C22 |
C8 |
C21 |
C9 |
120.2 |
120.3 |
| C21 |
C8 |
C9 |
C10 |
290.6 |
180.6 |
| C21 |
C8 |
C9 |
H32 |
51.2 |
300.6 |
| C21 |
C8 |
C9 |
H31 |
170.1 |
60.6 |
| H39 |
C21 |
C8 |
H38 |
240.0 |
240.0 |
| H39 |
C21 |
C8 |
H40 |
120.0 |
120.0 |
| H38 |
C21 |
C8 |
H40 |
240.0 |
240.0 |
| C7 |
C8 |
C9 |
C21 |
117.3 |
119.8 |
| C9 |
C8 |
C7 |
H29 |
174.4 |
298.7 |
| C9 |
C8 |
C7 |
H30 |
54.5 |
178.5 |
| C5 |
C10 |
C9 |
C8 |
349.8 |
30.5 |
| C9 |
C8 |
C21 |
H39 |
297.9 |
179.6 |
| C9 |
C8 |
C21 |
H38 |
58.0 |
299.6 |
| C9 |
C8 |
C21 |
H40 |
178.0 |
59.6 |
| C8 |
C9 |
C10 |
N1 |
171.1 |
210.5 |
| C10 |
C9 |
C8 |
H32 |
239.4 |
240.0 |
| C10 |
C9 |
C8 |
H31 |
120.6 |
120.1 |
| H32 |
C9 |
C8 |
H31 |
241.2 |
240.0 |
| C13 |
C3 |
C2 |
N1 |
176.6 |
179.9 |
| C13 |
C3 |
C2 |
N12 |
359.9 |
0.2 |
| C3 |
C13 |
N11 |
N12 |
359.8 |
359.8 |
| C3 |
C13 |
N11 |
C15 |
182.7 |
180.0 |
| C3 |
C2 |
N1 |
C10 |
359.8 |
0.1 |
| N1 |
C2 |
C3 |
N12 |
176.7 |
179.7 |
| C3 |
C2 |
N12 |
N11 |
360.0 |
359.6 |
| C5 |
C10 |
C9 |
N1 |
178.6 |
180.0 |
| C8 |
C9 |
C10 |
H32 |
120.6 |
120.1 |
| C8 |
C9 |
C10 |
H31 |
239.4 |
240.0 |
| C2 |
N1 |
C10 |
C9 |
180.9 |
180.1 |
| H32 |
C9 |
C10 |
H31 |
118.8 |
119.9 |
| C5 |
C10 |
N1 |
C9 |
181.4 |
180.0 |
| N1 |
C10 |
C9 |
H32 |
50.5 |
90.4 |
| N1 |
C10 |
C9 |
H31 |
291.7 |
330.5 |
| C10 |
N1 |
C2 |
N12 |
176.1 |
179.7 |
| C2 |
N12 |
N11 |
C13 |
0.2 |
0.4 |
| C5 |
C10 |
N1 |
C2 |
2.3 |
0.0 |
| C3 |
C2 |
N1 |
N12 |
183.7 |
180.4 |
| C9 |
C10 |
N1 |
C2 |
180.9 |
180.1 |
| N1 |
C2 |
N12 |
N11 |
183.3 |
180.0 |
| C3 |
C2 |
N12 |
N1 |
176.7 |
179.6 |
| N12 |
C2 |
N1 |
C10 |
176.1 |
179.7 |
| C13 |
N11 |
N12 |
C2 |
0.2 |
0.4 |
| C13 |
N11 |
N12 |
C15 |
182.6 |
180.2 |
| C13 |
N11 |
C15 |
N12 |
176.9 |
179.7 |
| C2 |
N12 |
N11 |
C15 |
177.5 |
180.2 |
| N11 |
C15 |
C20 |
H37 |
1.8 |
0.0 |
| C13 |
N11 |
C15 |
C16 |
322.2 |
325.2 |
| C15 |
C16 |
C17 |
H34 |
179.7 |
179.8 |
| C16 |
C15 |
C20 |
H37 |
180.3 |
179.8 |
| C18 |
C17 |
C16 |
H34 |
180.0 |
179.8 |
| C16 |
C17 |
C18 |
H35 |
179.8 |
180.2 |
| C13 |
N11 |
C15 |
C20 |
140.7 |
145.0 |
| C15 |
C20 |
C19 |
H36 |
179.2 |
180.0 |
| C16 |
C17 |
C18 |
H34 |
180.0 |
180.2 |
| C19 |
C18 |
C17 |
H35 |
180.0 |
180.0 |
| C17 |
C18 |
C19 |
H36 |
180.7 |
180.1 |
| C20 |
C19 |
C18 |
H35 |
180.7 |
180.0 |
| C18 |
C19 |
C20 |
H36 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H34 |
179.8 |
180.0 |
| C17 |
C18 |
C19 |
H35 |
180.0 |
180.0 |
| C20 |
C19 |
C18 |
H36 |
180.0 |
180.0 |
| H29 |
C7 |
C8 |
C21 |
294.8 |
58.5 |
| H29 |
C7 |
C8 |
C9 |
174.4 |
298.7 |
| C8 |
C7 |
H29 |
H30 |
240.1 |
239.8 |
| H30 |
C7 |
C8 |
C21 |
174.8 |
298.3 |
| H30 |
C7 |
C8 |
C9 |
54.5 |
178.5 |
| C8 |
C7 |
H30 |
H29 |
119.9 |
120.2 |
| H34 |
C17 |
C18 |
C19 |
179.8 |
180.0 |
| H34 |
C17 |
C18 |
H35 |
359.8 |
360.0 |
| C17 |
C18 |
H35 |
C19 |
180.0 |
180.0 |
| H35 |
C18 |
C17 |
H34 |
359.8 |
360.0 |
| H35 |
C18 |
C19 |
H36 |
0.8 |
0.0 |
| H36 |
C19 |
C18 |
H35 |
0.8 |
0.0 |
| H37 |
C20 |
C19 |
H36 |
359.2 |
360.0 |
| H39 |
C21 |
C8 |
C9 |
297.9 |
179.6 |
| C8 |
C21 |
H39 |
H38 |
120.0 |
120.0 |
| C8 |
C21 |
H39 |
H40 |
240.0 |
240.0 |
| H38 |
C21 |
H39 |
H40 |
120.0 |
120.0 |
| H38 |
C21 |
C8 |
C9 |
58.0 |
299.6 |
| C8 |
C21 |
H38 |
H39 |
240.0 |
240.0 |
| C8 |
C21 |
H38 |
H40 |
120.0 |
120.0 |
| H39 |
C21 |
H38 |
H40 |
240.0 |
240.0 |
| H40 |
C21 |
C8 |
C9 |
178.0 |
59.6 |
| C8 |
C21 |
H40 |
H39 |
120.0 |
120.0 |
| C8 |
C21 |
H40 |
H38 |
240.0 |
240.0 |
| H39 |
C21 |
H40 |
H38 |
120.0 |
120.0 |
| H41 |
C22 |
C8 |
C9 |
60.9 |
300.4 |
| H42 |
C22 |
H41 |
H43 |
120.0 |
119.9 |
| H42 |
C22 |
C8 |
C9 |
181.0 |
60.4 |
| H41 |
C22 |
H42 |
H43 |
240.0 |
240.1 |
| H43 |
C22 |
C8 |
C9 |
300.9 |
180.4 |
| H41 |
C22 |
H43 |
H42 |
120.0 |
119.9 |
| C26 |
C25 |
H45 |
C24 |
180.0 |
180.3 |
| H45 |
C25 |
C24 |
S28 |
181.3 |
180.2 |
| H46 |
C26 |
C27 |
S28 |
180.4 |
180.1 |
| H46 |
C26 |
C27 |
H47 |
0.3 |
360.0 |
| H46 |
C26 |
C25 |
C24 |
178.9 |
180.0 |
| H46 |
C26 |
C25 |
H45 |
358.9 |
359.7 |
| C26 |
C27 |
H47 |
S28 |
180.0 |
180.1 |
| H47 |
C27 |
C26 |
H46 |
0.3 |
360.0 |
| H47 |
C27 |
S28 |
C24 |
180.4 |
180.0 |
| H33 |
C16 |
C17 |
H34 |
359.7 |
0.3 |
| C8 |
C9 |
H32 |
C10 |
236.5 |
239.9 |
| C8 |
C9 |
H32 |
H31 |
118.2 |
120.0 |
| H32 |
C9 |
C10 |
N1 |
50.5 |
90.4 |
| C10 |
C9 |
H32 |
H31 |
241.8 |
240.1 |
| C8 |
C9 |
H31 |
C10 |
123.5 |
120.1 |
| C8 |
C9 |
H31 |
H32 |
241.8 |
240.0 |
| H31 |
C9 |
C10 |
N1 |
291.7 |
330.5 |
| C10 |
C9 |
H31 |
H32 |
118.3 |
119.9 |