PDB Chemical Component O2G

Ideal Model

Chemical Description

Name 2'-DEOXY-N,N-DIMETHYL-5'-O-[OXIDO(OXO)PHOSPHONIO]GUANOSINE
Formula C12 H18 N5 O7 P
Formal charge 0
Molecular weight 375.274 g/mol
Component type RNA LINKING
Nonstandard Parent Id G

Chemical features

Atom count 43
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3
Bond count 45
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N,N-dimethylguanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-dimethylamino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN(C)C1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) CN(C)C1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) CN(C)C1=Nc2c(ncn2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)C(=O)N1
InChI descriptor InChI=1S/C12H18N5O7P/c1-16(2)12-14-10-9(11(19)15-12)13-5-17(10)8-3-6(18)7(24-8)4-23-25(20,21)22/h5-8,18H,3-4H2,1-2H3,(H,14,15,19)(H2,20,21,22)/t6-,7+,8+/m0/s1
InChIKey descriptor CAVFKMBOCISJHQ-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2009-01-22
Release status REL
Processing site EBI