PDB Chemical Component O2G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for O2G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP3   1.610
OP3 HP3   0.967
OP1 HP1 0.950 0.967
P OP1 1.491 1.611
P OP2 1.475 1.479
P O5' 1.582 1.610
O5' C5' 1.433 1.429
C5' C4' 1.534 1.530
C4' O4' 1.443 1.444
C4' C3' 1.533 1.551
C3' O3' 1.428 1.429
C3' C2' 1.528 1.548
O4' C1' 1.436 1.437
C2' C1' 1.526 1.541
C1' N9 1.478 1.464
N9 C8 1.330 1.365
C8 N7 1.332 1.301
N7 C5 1.329 1.355
C5 C6 1.386 1.415
C6 O6 1.232 1.219
C6 N1 1.400 1.351
N1 C2 1.400 1.363
C2 N2 1.328 1.372
C2 N3 1.346 1.314
N9 C4 1.335 1.369
C5 C4 1.392 1.399
N3 C4 1.334 1.338
N2 CM1 1.470 1.465
N2 CM2 1.470 1.465
C5' H5' 1.100 1.089
C5' H5'A 1.100 1.091
C4' H4' 1.100 1.089
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' H2' 1.100 1.089
C2' H2'A 1.100 1.090
C1' H1' 1.100 1.090
C8 H8 1.080 1.080
N1 HN1 1.000 0.971
CM1 HM1 1.100 1.090
CM1 HM1A 1.100 1.091
CM1 HM1B 1.100 1.090
CM2 HM2 1.100 1.090
CM2 HM2A 1.100 1.090
CM2 HM2B 1.100 1.090

Bond Angles for O2G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HP3   114.0
OP1 P OP3   109.4
OP2 P OP3   109.5
O5' P OP3   109.4
P OP1 HP1 109.5 114.0
OP1 P OP2 118.6 109.5
OP1 P O5' 109.7 109.4
OP2 P O5' 105.1 109.5
P O5' C5' 121.0 123.0
O5' C5' C4' 109.9 109.5
O5' C5' H5' 109.3 109.5
O5' C5' H5'A 109.3 109.5
C5' C4' O4' 113.8 110.6
C5' C4' C3' 109.1 110.6
C4' C5' H5' 109.3 109.5
C4' C5' H5'A 109.2 109.5
C5' C4' H4' 105.7 110.6
O4' C4' C3' 105.8 103.5
C4' O4' C1' 104.1 107.0
O4' C4' H4' 109.0 110.6
C4' C3' O3' 113.4 110.9
C4' C3' C2' 103.8 102.1
C3' C4' H4' 113.7 110.7
C4' C3' H3' 110.2 110.9
O3' C3' C2' 107.8 110.9
O3' C3' H3' 106.3 110.8
C3' O3' HO3' 109.5 114.0
C3' C2' C1' 98.0 104.2
C2' C3' H3' 115.6 111.0
C3' C2' H2' 113.5 110.5
C3' C2' H2'A 115.8 110.4
O4' C1' C2' 101.6 107.3
O4' C1' N9 111.5 109.9
O4' C1' H1' 115.1 109.9
C2' C1' N9 114.3 109.9
C1' C2' H2' 113.5 110.4
C1' C2' H2'A 115.8 110.5
C2' C1' H1' 112.4 109.8
C1' N9 C8 126.7 126.3
C1' N9 C4 124.9 126.3
N9 C1' H1' 102.6 110.0
N9 C8 N7 109.4 109.8
C8 N9 C4 108.4 107.4
N9 C8 H8 125.3 125.1
C8 N7 C5 108.2 109.3
N7 C8 H8 125.3 125.1
N7 C5 C6 133.3 134.1
N7 C5 C4 107.4 107.3
C5 C6 O6 119.9 120.8
C5 C6 N1 118.7 118.4
C6 C5 C4 119.4 118.6
O6 C6 N1 121.5 120.8
C6 N1 C2 119.5 120.3
C6 N1 HN1 120.2 119.9
N1 C2 N2 120.7 119.0
N1 C2 N3 119.9 121.9
C2 N1 HN1 120.2 119.8
N2 C2 N3 119.4 119.1
C2 N2 CM1 120.5 120.0
C2 N2 CM2 119.9 120.0
C2 N3 C4 121.4 121.1
N9 C4 C5 106.7 106.1
N9 C4 N3 132.1 134.2
C5 C4 N3 121.2 119.7
CM1 N2 CM2 119.6 120.0
N2 CM1 HM1 109.5 109.4
N2 CM1 HM1A 109.5 109.5
N2 CM1 HM1B 109.5 109.5
N2 CM2 HM2 109.5 109.4
N2 CM2 HM2A 109.4 109.5
N2 CM2 HM2B 109.5 109.5
H5' C5' H5'A 109.8 109.5
H2' C2' H2'A 101.0 110.6
HM1 CM1 HM1A 109.5 109.5
HM1 CM1 HM1B 109.5 109.5
HM1A CM1 HM1B 109.5 109.5
HM2 CM2 HM2A 109.4 109.5
HM2 CM2 HM2B 109.5 109.4
HM2A CM2 HM2B 109.5 109.5

Torsion Angles for O2G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP3 P OP1 HP1   299.9
OP1 P OP3 OP2   120.0
OP1 P OP3 O5'   240.1
OP2 P OP3 O5'   120.0
OP3 P O5' C5'   65.0
OP1 P OP3 HP3   300.1
OP2 P OP3 HP3   180.0
O5' P OP3 HP3   60.0
HP1 OP1 P OP3   299.9
HP1 OP1 P OP2 238.0 60.0
HP1 OP1 P O5' 117.4 180.0
OP2 P OP1 OP3   120.0
O5' P OP1 OP3   240.1
OP2 P OP1 O5' 120.6 240.0
OP1 P O5' C5' 197.3 185.0
OP1 P OP2 OP3   240.0
O5' P OP2 OP3   120.0
OP2 P OP1 HP1 238.0 60.0
OP1 P OP2 O5' 237.1 120.0
OP2 P O5' C5' 68.9 305.0
OP1 P O5' OP3   119.9
OP2 P O5' OP3   240.0
O5' P OP1 HP1 117.4 180.0
OP1 P O5' OP2 128.5 240.0
P O5' C5' C4' 140.5 180.0
P O5' C5' H5' 260.5 300.0
P O5' C5' H5'A 20.7 60.0
C5' O5' P OP3   65.0
O5' C5' C4' O4' 280.4 66.5
O5' C5' C4' C3' 38.2 180.5
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'A 119.8 120.0
O5' C5' C4' H4' 160.8 303.6
H5' C5' O5' H5'A 239.8 240.0
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'A 240.1 240.0
O4' C4' C5' C3' 242.2 246.0
C5' C4' O4' C1' 145.8 158.5
O4' C4' C5' H4' 119.6 122.9
C5' C4' C3' O3' 126.4 86.3
C5' C4' C3' C2' 243.1 204.5
C3' C4' C5' H4' 237.4 237.0
C5' C4' C3' H3' 7.4 322.8
H5' C5' C4' H5'A 120.2 120.0
C5' C4' O4' C3' 119.7 118.5
O4' C4' C5' H5' 160.4 306.5
O4' C4' C5' H5'A 40.2 186.5
C5' C4' O4' H4' 242.3 237.1
O4' C4' C3' O3' 249.2 204.8
O4' C4' C3' C2' 5.9 323.0
C3' C4' O4' H4' 122.6 118.6
O4' C4' C3' H3' 130.2 81.2
C4' O4' C1' C2' 311.6 333.5
C4' O4' C1' N9 189.5 214.0
C4' O4' C1' H1' 73.2 92.9
C5' C4' C3' O4' 237.2 241.5
C3' C4' C5' H5' 278.2 60.5
C3' C4' C5' H5'A 158.1 300.5
C5' C4' C3' H4' 117.6 122.9
C3' C4' O4' C1' 26.1 40.0
O4' C4' C3' H4' 240.4 241.4
O3' C3' C4' C2' 243.3 241.8
O3' C3' C4' H3' 119.0 123.5
C4' C3' O3' HO3' 223.0 180.0
C4' C3' C2' C1' 327.0 20.9
C2' C3' C4' H3' 235.7 241.7
C4' C3' C2' H2' 87.0 139.5
C4' C3' C2' H2'A 203.2 262.2
C4' C3' O3' C2' 114.3 112.7
O3' C3' C4' H4' 8.7 323.3
C4' C3' O3' H3' 238.8 236.4
O3' C3' C2' C1' 87.6 139.1
C2' C3' O3' H3' 124.5 123.7
O3' C3' C2' H2' 207.6 257.7
O3' C3' C2' H2'A 323.8 20.4
C4' C3' C2' O3' 239.4 241.8
C2' C3' C4' H4' 125.5 81.6
C4' C3' C2' H3' 120.7 118.2
O3' C3' C2' H3' 241.3 236.4
C2' C3' O3' HO3' 108.6 67.3
O4' C1' C2' C3' 49.9 2.0
C3' C2' C1' N9 170.1 121.5
C1' C2' C3' H2' 240.0 241.4
C1' C2' C3' H2'A 123.8 118.7
C3' C2' C1' H1' 286.4 242.6
H2' C2' C3' H2'A 243.8 237.3
C1' O4' C4' C3' 26.1 40.0
C1' O4' C4' H4' 263.5 281.4
C3' C2' C1' O4' 49.9 2.0
C2' C1' O4' N9 122.1 119.4
O4' C1' C2' H2' 289.9 243.3
O4' C1' C2' H2'A 173.8 120.7
C2' C1' O4' H1' 238.4 240.6
O4' C1' N9 C8 80.6 23.6
O4' C1' N9 C4 258.5 203.3
N9 C1' O4' H1' 116.3 121.2
C1' C2' C3' H3' 206.3 262.7
C3' C2' C1' H2' 120.0 118.7
C3' C2' C1' H2'A 236.2 241.4
O4' C1' C2' N9 239.9 240.6
O4' C1' C2' H1' 123.5 119.4
C2' C1' N9 C8 326.2 265.7
C2' C1' N9 C4 144.1 85.4
N9 C1' C2' H1' 243.6 238.8
H2' C2' C1' H2'A 116.2 122.7
O4' C1' N9 C2' 114.4 117.8
O4' C1' N9 H1' 236.3 238.9
N9 C1' C2' H2' 50.0 2.8
N9 C1' C2' H2'A 293.9 240.1
C2' C1' N9 H1' 121.9 121.1
C1' N9 C8 N7 177.8 180.0
C8 N9 C1' C4 182.1 180.3
C1' N9 C8 H8 357.8 359.9
C1' N9 C4 C5 182.2 179.9
C1' N9 C4 N3 2.7 0.7
C1' N9 C8 C4 178.2 179.7
C8 N9 C1' H1' 204.3 144.7
N9 C8 N7 C5 0.2 360.0
N7 C8 N9 H8 180.0 180.0
C8 N9 C4 C5 0.5 359.6
C8 N9 C4 N3 180.9 180.4
N7 C8 N9 C4 359.6 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.5 180.0
C8 N7 C5 C4 0.1 359.8
C5 N7 C8 H8 180.2 180.0
N7 C5 C6 O6 2.6 0.1
N7 C5 C6 N1 181.1 180.0
C6 C5 N7 C4 179.4 180.2
N9 C4 C5 N7 359.6 0.4
N7 C5 C4 N3 179.3 179.7
N7 C5 C6 C4 180.7 179.8
O6 C6 C5 N1 181.5 180.1
C5 C6 N1 C2 359.6 0.1
C5 C6 N1 HN1 179.5 180.0
N9 C4 C5 C6 180.2 180.2
C6 C5 C4 N3 359.8 359.5
C5 C6 O6 N1 178.5 179.9
O6 C6 C5 C4 181.9 180.3
O6 C6 N1 C2 178.1 180.0
O6 C6 N1 HN1 358.0 359.9
C5 C6 N1 O6 181.5 180.1
N1 C6 C5 C4 0.4 0.2
C6 N1 C2 N2 181.3 180.0
C6 N1 C2 N3 0.3 359.9
C2 N1 C6 HN1 180.0 180.1
C6 N1 C2 HN1 180.0 179.9
N2 C2 N1 N3 181.0 180.0
N1 C2 N2 CM1 177.9 174.4
N1 C2 N2 CM2 359.8 354.5
N1 C2 N3 C4 359.9 359.8
N1 C2 N2 N3 179.0 180.0
N2 C2 N1 HN1 1.3 0.1
N2 C2 N3 C4 178.9 179.7
CM1 N2 C2 CM2 178.1 180.0
C2 N2 CM1 HM1 292.0 90.0
C2 N2 CM1 HM1A 52.0 210.0
C2 N2 CM1 HM1B 172.0 330.0
C2 N2 CM2 HM2 123.9 5.0
C2 N2 CM2 HM2A 243.8 125.0
C2 N2 CM2 HM2B 3.8 245.1
N1 C2 N3 N2 181.0 180.0
N3 C2 N1 HN1 180.3 180.0
N3 C2 N2 CM1 358.9 354.5
N3 C2 N2 CM2 180.8 174.5
N9 C4 N3 C2 179.5 179.6
C5 C4 N3 C2 0.0 0.5
C1' N9 C4 C8 181.8 180.3
C4 N9 C1' H1' 22.2 324.3
C4 N9 C8 N7 359.6 0.3
C4 N9 C8 H8 179.6 180.2
N7 C5 C4 N9 359.6 0.4
C6 C5 C4 N9 180.2 180.2
C2 N3 C4 N9 179.5 179.6
C5 C4 N9 N3 179.6 179.2
N7 C5 C4 C6 179.5 180.2
C4 C5 C6 O6 181.9 180.3
C4 C5 C6 N1 0.4 0.2
C2 N3 C4 C5 0.0 0.5
N9 C4 C5 N3 180.4 180.7
N9 C4 N3 C5 179.5 179.1
CM1 N2 C2 N3 358.9 354.5
C2 N2 CM1 CM2 181.9 180.0
CM1 N2 CM2 HM2 305.7 185.1
CM1 N2 CM2 HM2A 65.7 305.1
CM1 N2 CM2 HM2B 185.7 65.1
HM1 CM1 N2 HM1A 240.0 240.0
HM1 CM1 N2 HM1B 120.0 120.0
HM1A CM1 N2 HM1B 240.0 240.0
CM2 N2 C2 N3 180.8 174.5
C2 N2 CM2 CM1 178.2 180.0
CM2 N2 CM1 HM1 110.1 270.0
CM2 N2 CM1 HM1A 230.1 29.9
CM2 N2 CM1 HM1B 350.1 150.0
HM2 CM2 N2 HM2A 240.0 240.0
HM2 CM2 N2 HM2B 120.0 120.0
HM2A CM2 N2 HM2B 240.0 240.0
O5' C5' H5' C4' 239.7 240.0
O5' C5' H5' H5'A 119.8 120.0
H5' C5' C4' O4' 160.4 306.5
H5' C5' C4' C3' 278.2 60.5
C4' C5' H5' H5'A 240.2 240.0
H5' C5' C4' H4' 40.9 183.6
O5' C5' H5'A C4' 120.2 120.0
O5' C5' H5'A H5' 240.1 240.0
H5'A C5' C4' O4' 40.2 186.5
H5'A C5' C4' C3' 158.1 300.5
C4' C5' H5'A H5' 119.9 120.0
H5'A C5' C4' H4' 280.7 63.5
C5' C4' H4' O4' 122.7 122.9
C5' C4' H4' C3' 240.4 237.0
H4' C4' C5' H5' 40.9 183.6
H4' C4' C5' H5'A 280.7 63.5
O4' C4' H4' C3' 117.7 114.1
H4' C4' O4' C1' 263.5 281.4
H4' C4' C3' O3' 8.7 323.3
H4' C4' C3' C2' 125.5 81.6
H4' C4' C3' H3' 249.8 199.8
C4' C3' H3' O3' 123.3 123.6
C4' C3' H3' C2' 242.8 247.3
H3' C3' C4' H4' 249.8 199.8
O3' C3' H3' C2' 119.6 123.7
H3' C3' O3' HO3' 344.2 303.6
H3' C3' C2' C1' 206.3 262.7
H3' C3' C2' H2' 326.3 21.3
H3' C3' C2' H2'A 82.5 144.0
HO3' O3' C3' C2' 108.6 67.3
HO3' O3' C3' H3' 344.2 303.6
C3' C2' H2' C1' 249.3 245.2
H2' C2' C3' H3' 326.3 21.3
C3' C2' H2' H2'A 124.6 122.6
H2' C2' C1' N9 50.0 2.8
C1' C2' H2' H2'A 235.4 237.4
H2' C2' C1' H1' 166.4 124.0
C3' C2' H2'A C1' 113.9 114.7
H2'A C2' C3' H3' 82.5 144.0
C3' C2' H2'A H2' 236.9 237.3
H2'A C2' C1' N9 293.9 240.1
C1' C2' H2'A H2' 123.0 122.6
H2'A C2' C1' H1' 50.3 1.3
O4' C1' H1' C2' 244.4 242.2
O4' C1' H1' N9 121.2 121.1
C2' C1' H1' N9 236.8 238.9
H1' C1' C2' H2' 166.4 124.0
H1' C1' C2' H2'A 50.3 1.3
H1' C1' N9 C8 204.3 144.7
H1' C1' N9 C4 22.2 324.3
N9 C8 H8 N7 180.0 180.1
H8 C8 N9 C4 179.6 180.2
H8 C8 N7 C5 180.2 180.0
C6 N1 HN1 C2 180.0 180.1
HN1 N1 C2 N2 1.3 0.1
HN1 N1 C2 N3 180.3 180.0
HM1 CM1 N2 CM2 110.1 270.0
N2 CM1 HM1 HM1A 120.0 120.0
N2 CM1 HM1 HM1B 240.0 240.0
HM1A CM1 HM1 HM1B 120.0 120.0
HM1A CM1 N2 CM2 230.1 29.9
N2 CM1 HM1A HM1 240.0 240.1
N2 CM1 HM1A HM1B 120.0 120.1
HM1 CM1 HM1A HM1B 240.0 240.0
HM1B CM1 N2 CM2 350.1 150.0
N2 CM1 HM1B HM1 120.0 120.0
N2 CM1 HM1B HM1A 240.0 240.0
HM1 CM1 HM1B HM1A 120.0 120.0
N2 CM2 HM2 HM2A 120.0 120.0
N2 CM2 HM2 HM2B 240.0 240.0
HM2A CM2 HM2 HM2B 120.0 120.0
N2 CM2 HM2A HM2 240.0 240.0
N2 CM2 HM2A HM2B 120.0 120.1
HM2 CM2 HM2A HM2B 240.0 240.0
N2 CM2 HM2B HM2 120.0 120.0
N2 CM2 HM2B HM2A 240.0 239.9
HM2 CM2 HM2B HM2A 120.0 120.0