PDB Chemical Component O1Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O1Z
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.441 |
1.406 |
| C5 |
C1 |
1.494 |
1.418 |
| C1 |
C6 |
1.449 |
1.406 |
| C12 |
S1 |
1.710 |
1.761 |
| C14 |
S1 |
1.706 |
1.708 |
| C3 |
C2 |
1.443 |
1.357 |
| C2 |
H2 |
1.080 |
1.081 |
| C13 |
N2 |
1.359 |
1.312 |
| N2 |
C14 |
1.364 |
1.302 |
| C10 |
C3 |
1.460 |
1.406 |
| C3 |
H3 |
1.080 |
1.080 |
| C14 |
N3 |
1.375 |
1.377 |
| N3 |
C15 |
1.471 |
1.465 |
| N3 |
HN3 |
1.000 |
0.970 |
| O3 |
C11 |
1.360 |
1.219 |
| C10 |
C4 |
1.473 |
1.385 |
| C4 |
C5 |
1.441 |
1.403 |
| C4 |
H4 |
1.080 |
1.080 |
| N4 |
C13 |
1.365 |
1.386 |
| N4 |
HN4 |
1.000 |
0.970 |
| N4 |
HN4A |
1.000 |
0.971 |
| C5 |
C9 |
1.453 |
1.407 |
| C6 |
C7 |
1.447 |
1.361 |
| C6 |
H6 |
1.080 |
1.080 |
| C8 |
C7 |
1.446 |
1.394 |
| C7 |
H7 |
1.080 |
1.080 |
| C9 |
C8 |
1.446 |
1.361 |
| C8 |
H8 |
1.080 |
1.079 |
| C9 |
H9 |
1.080 |
1.080 |
| C11 |
C10 |
1.356 |
1.480 |
| C12 |
C11 |
1.504 |
1.407 |
| C13 |
C12 |
1.396 |
1.383 |
| C15 |
C16 |
1.567 |
1.529 |
| C15 |
C20 |
1.552 |
1.530 |
| C15 |
H15 |
1.100 |
1.091 |
| C16 |
C17 |
1.549 |
1.531 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C17 |
C18 |
1.551 |
1.530 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C19 |
C18 |
1.550 |
1.530 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C20 |
C19 |
1.550 |
1.530 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.100 |
1.090 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
Bond Angles for O1Z
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
121.1 |
121.1 |
| C5 |
C1 |
C6 |
119.4 |
119.3 |
| C1 |
C6 |
C7 |
119.9 |
119.7 |
| C1 |
C6 |
H6 |
120.0 |
120.1 |
| C3 |
C2 |
H2 |
119.9 |
119.9 |
| C13 |
N2 |
C14 |
110.5 |
117.3 |
| N2 |
C14 |
N3 |
122.2 |
124.6 |
| C10 |
C3 |
H3 |
119.2 |
119.5 |
| C14 |
N3 |
C15 |
119.2 |
120.0 |
| C14 |
N3 |
HN3 |
106.3 |
120.0 |
| C15 |
N3 |
HN3 |
106.4 |
120.0 |
| N3 |
C15 |
C16 |
111.6 |
109.5 |
| N3 |
C15 |
C20 |
110.2 |
109.5 |
| N3 |
C15 |
H15 |
107.7 |
109.4 |
| O3 |
C11 |
C10 |
118.8 |
119.9 |
| C10 |
C4 |
H4 |
119.5 |
120.3 |
| C5 |
C4 |
H4 |
119.4 |
120.3 |
| C4 |
C5 |
C9 |
121.0 |
121.1 |
| C13 |
N4 |
HN4 |
109.5 |
120.0 |
| C13 |
N4 |
HN4A |
109.5 |
120.0 |
| N4 |
C13 |
C12 |
124.8 |
123.2 |
| HN4 |
N4 |
HN4A |
109.5 |
120.0 |
| C5 |
C9 |
C8 |
119.8 |
119.7 |
| C5 |
C9 |
H9 |
120.1 |
120.2 |
| C7 |
C6 |
H6 |
120.1 |
120.2 |
| C6 |
C7 |
H7 |
119.6 |
119.5 |
| C8 |
C7 |
H7 |
119.6 |
119.5 |
| C9 |
C8 |
H8 |
119.7 |
119.5 |
| C16 |
C15 |
C20 |
109.9 |
109.5 |
| C16 |
C15 |
H15 |
108.0 |
109.5 |
| C15 |
C16 |
C17 |
111.2 |
109.5 |
| C15 |
C16 |
H16 |
108.9 |
109.5 |
| C15 |
C16 |
H16A |
108.9 |
109.5 |
| C20 |
C15 |
H15 |
109.5 |
109.5 |
| C15 |
C20 |
C19 |
111.2 |
109.5 |
| C15 |
C20 |
H20 |
108.9 |
109.5 |
| C15 |
C20 |
H20A |
108.9 |
109.4 |
| C17 |
C16 |
H16 |
108.9 |
109.4 |
| C17 |
C16 |
H16A |
108.9 |
109.5 |
| C16 |
C17 |
C18 |
111.2 |
109.5 |
| C16 |
C17 |
H17 |
108.9 |
109.5 |
| C16 |
C17 |
H17A |
108.9 |
109.4 |
| H16 |
C16 |
H16A |
110.0 |
109.4 |
| C18 |
C17 |
H17 |
108.9 |
109.5 |
| C18 |
C17 |
H17A |
108.9 |
109.4 |
| C17 |
C18 |
H18 |
108.5 |
109.4 |
| C17 |
C18 |
H18A |
108.5 |
109.5 |
| H17 |
C17 |
H17A |
110.1 |
109.5 |
| C19 |
C18 |
H18 |
108.5 |
109.5 |
| C19 |
C18 |
H18A |
108.5 |
109.5 |
| H18 |
C18 |
H18A |
110.4 |
109.5 |
| C20 |
C19 |
H19 |
108.6 |
109.5 |
| C20 |
C19 |
H19A |
108.6 |
109.5 |
| H19 |
C19 |
H19A |
110.4 |
109.4 |
| H20 |
C20 |
H20A |
110.0 |
109.5 |
Torsion Angles for O1Z
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C1 |
C2 |
C6 |
180.1 |
179.7 |
| C2 |
C1 |
C6 |
C7 |
180.2 |
180.0 |
| C2 |
C1 |
C6 |
H6 |
0.2 |
359.9 |
| C2 |
C1 |
C5 |
C6 |
179.9 |
180.3 |
| C5 |
C1 |
C6 |
C7 |
0.0 |
0.3 |
| C5 |
C1 |
C6 |
H6 |
180.0 |
180.2 |
| C7 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
| C1 |
C6 |
C7 |
H7 |
179.9 |
179.9 |
| C3 |
C2 |
C1 |
C6 |
179.4 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
359.4 |
360.0 |
| C13 |
N2 |
C14 |
N3 |
180.9 |
180.0 |
| N2 |
C14 |
N3 |
C15 |
166.0 |
360.0 |
| N2 |
C14 |
N3 |
HN3 |
286.0 |
179.9 |
| C10 |
C3 |
C2 |
H2 |
180.2 |
180.1 |
| H3 |
C3 |
C2 |
H2 |
0.2 |
360.0 |
| C15 |
N3 |
C14 |
HN3 |
240.0 |
180.1 |
| C14 |
N3 |
C15 |
C16 |
284.8 |
205.0 |
| C14 |
N3 |
C15 |
C20 |
162.5 |
85.0 |
| C14 |
N3 |
C15 |
H15 |
43.1 |
325.0 |
| C14 |
N3 |
C15 |
HN3 |
120.0 |
179.9 |
| C16 |
C15 |
N3 |
C20 |
122.4 |
120.0 |
| C16 |
C15 |
N3 |
H15 |
241.7 |
240.0 |
| N3 |
C15 |
C16 |
C17 |
179.6 |
180.0 |
| N3 |
C15 |
C16 |
H16 |
299.6 |
300.0 |
| N3 |
C15 |
C16 |
H16A |
59.7 |
60.0 |
| C20 |
C15 |
N3 |
H15 |
119.3 |
120.0 |
| N3 |
C15 |
C20 |
C19 |
180.1 |
180.0 |
| N3 |
C15 |
C20 |
H20 |
300.1 |
300.0 |
| N3 |
C15 |
C20 |
H20A |
60.2 |
60.1 |
| C14 |
N3 |
HN3 |
C15 |
231.9 |
180.1 |
| HN3 |
N3 |
C15 |
C16 |
164.8 |
25.1 |
| HN3 |
N3 |
C15 |
C20 |
42.4 |
265.0 |
| HN3 |
N3 |
C15 |
H15 |
283.1 |
145.0 |
| C4 |
C10 |
C3 |
H3 |
180.2 |
180.3 |
| O3 |
C11 |
C10 |
C4 |
135.8 |
151.7 |
| C5 |
C4 |
C10 |
H4 |
180.0 |
180.1 |
| C4 |
C5 |
C1 |
C6 |
180.4 |
180.0 |
| C10 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C4 |
C5 |
C9 |
C8 |
179.5 |
179.5 |
| C4 |
C5 |
C9 |
H9 |
359.5 |
360.0 |
| H4 |
C4 |
C5 |
C9 |
0.4 |
0.1 |
| N4 |
C13 |
N2 |
C14 |
179.7 |
180.0 |
| HN4 |
N4 |
C13 |
HN4A |
240.0 |
180.1 |
| C13 |
N4 |
HN4 |
HN4A |
120.0 |
179.9 |
| HN4 |
N4 |
C13 |
C12 |
179.1 |
180.0 |
| C13 |
N4 |
HN4A |
HN4 |
240.0 |
180.1 |
| HN4A |
N4 |
C13 |
C12 |
299.1 |
360.0 |
| C9 |
C5 |
C1 |
C6 |
0.1 |
359.9 |
| C9 |
C5 |
C4 |
H4 |
0.4 |
0.1 |
| C5 |
C9 |
C8 |
H8 |
180.1 |
180.2 |
| C1 |
C6 |
C7 |
H6 |
180.0 |
179.9 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
| C1 |
C6 |
H6 |
C7 |
180.0 |
180.1 |
| H6 |
C6 |
C7 |
H7 |
359.9 |
360.0 |
| C5 |
C9 |
C8 |
C7 |
0.1 |
0.7 |
| C8 |
C7 |
C6 |
H6 |
179.9 |
180.1 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
| H7 |
C7 |
C6 |
H6 |
359.9 |
360.0 |
| C5 |
C9 |
C8 |
H9 |
180.0 |
180.5 |
| C9 |
C8 |
C7 |
H7 |
180.1 |
179.5 |
| H8 |
C8 |
C7 |
H7 |
0.0 |
0.1 |
| C5 |
C9 |
H9 |
C8 |
180.0 |
179.5 |
| H9 |
C9 |
C8 |
H8 |
0.2 |
359.7 |
| C11 |
C10 |
C3 |
H3 |
1.7 |
0.1 |
| C11 |
C10 |
C4 |
H4 |
358.1 |
360.0 |
| N4 |
C13 |
C12 |
C11 |
359.6 |
360.0 |
| C12 |
C13 |
N2 |
C14 |
0.4 |
0.0 |
| C12 |
C13 |
N4 |
HN4 |
179.1 |
180.0 |
| C12 |
C13 |
N4 |
HN4A |
299.1 |
360.0 |
| C16 |
C15 |
N3 |
HN3 |
164.8 |
25.1 |
| N3 |
C15 |
C16 |
C20 |
237.5 |
240.0 |
| N3 |
C15 |
C16 |
H15 |
118.2 |
119.9 |
| C20 |
C15 |
C16 |
H15 |
240.7 |
240.0 |
| C16 |
C15 |
C20 |
C19 |
56.8 |
60.0 |
| C16 |
C15 |
C20 |
H20 |
176.8 |
180.0 |
| C16 |
C15 |
C20 |
H20A |
296.8 |
300.0 |
| C17 |
C16 |
C15 |
H16 |
240.0 |
240.0 |
| C17 |
C16 |
C15 |
H16A |
120.0 |
120.0 |
| C15 |
C16 |
C17 |
C18 |
55.8 |
60.0 |
| C15 |
C16 |
C17 |
H17 |
175.8 |
180.0 |
| C15 |
C16 |
C17 |
H17A |
295.8 |
300.0 |
| H16 |
C16 |
C15 |
H16A |
240.0 |
240.0 |
| C20 |
C15 |
N3 |
HN3 |
42.4 |
265.0 |
| N3 |
C15 |
C20 |
C16 |
123.3 |
120.0 |
| N3 |
C15 |
C20 |
H15 |
241.8 |
240.1 |
| C16 |
C15 |
C20 |
H15 |
118.4 |
120.0 |
| C20 |
C15 |
C16 |
C17 |
302.1 |
300.0 |
| C20 |
C15 |
C16 |
H16 |
62.1 |
60.0 |
| C20 |
C15 |
C16 |
H16A |
182.2 |
180.0 |
| C15 |
C20 |
C19 |
H19 |
185.5 |
180.0 |
| C15 |
C20 |
C19 |
H19A |
65.5 |
60.0 |
| H20 |
C20 |
C15 |
H20A |
240.0 |
240.0 |
| H15 |
C15 |
N3 |
HN3 |
283.1 |
145.0 |
| N3 |
C15 |
H15 |
C16 |
239.4 |
240.0 |
| N3 |
C15 |
H15 |
C20 |
119.8 |
120.0 |
| C16 |
C15 |
H15 |
C20 |
240.4 |
240.0 |
| H15 |
C15 |
C16 |
C17 |
61.5 |
60.0 |
| H15 |
C15 |
C16 |
H16 |
181.5 |
180.0 |
| H15 |
C15 |
C16 |
H16A |
301.5 |
300.0 |
| H15 |
C15 |
C20 |
C19 |
298.4 |
300.0 |
| H15 |
C15 |
C20 |
H20 |
58.4 |
60.0 |
| H15 |
C15 |
C20 |
H20A |
178.4 |
180.0 |
| C17 |
C16 |
C15 |
C20 |
302.1 |
300.0 |
| C17 |
C16 |
C15 |
H15 |
61.5 |
60.0 |
| C15 |
C16 |
C17 |
H16 |
120.0 |
120.0 |
| C15 |
C16 |
C17 |
H16A |
240.0 |
240.0 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C18 |
C17 |
C16 |
H17 |
240.0 |
240.0 |
| C18 |
C17 |
C16 |
H17A |
120.0 |
120.0 |
| C16 |
C17 |
C18 |
H18 |
67.2 |
60.0 |
| C16 |
C17 |
C18 |
H18A |
187.2 |
180.0 |
| H17 |
C17 |
C16 |
H17A |
240.0 |
240.0 |
| H16 |
C16 |
C15 |
C20 |
62.1 |
60.0 |
| H16 |
C16 |
C15 |
H15 |
181.5 |
180.0 |
| C15 |
C16 |
H16 |
C17 |
238.5 |
240.0 |
| C15 |
C16 |
H16 |
H16A |
119.3 |
120.0 |
| C17 |
C16 |
H16 |
H16A |
240.7 |
240.0 |
| H16 |
C16 |
C17 |
C18 |
295.7 |
300.0 |
| H16 |
C16 |
C17 |
H17 |
55.7 |
60.0 |
| H16 |
C16 |
C17 |
H17A |
175.8 |
180.0 |
| H16A |
C16 |
C15 |
C20 |
182.2 |
180.0 |
| H16A |
C16 |
C15 |
H15 |
301.5 |
300.0 |
| C15 |
C16 |
H16A |
C17 |
121.4 |
120.0 |
| C15 |
C16 |
H16A |
H16 |
240.7 |
240.0 |
| C17 |
C16 |
H16A |
H16 |
119.3 |
120.0 |
| H16A |
C16 |
C17 |
C18 |
175.8 |
180.0 |
| H16A |
C16 |
C17 |
H17 |
295.7 |
300.0 |
| H16A |
C16 |
C17 |
H17A |
55.8 |
60.0 |
| C18 |
C17 |
C16 |
H16 |
295.7 |
300.0 |
| C18 |
C17 |
C16 |
H16A |
175.8 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
120.0 |
120.0 |
| C16 |
C17 |
C18 |
H17A |
240.0 |
240.0 |
| H17 |
C17 |
C18 |
H17A |
120.0 |
120.0 |
| C19 |
C18 |
C17 |
H18 |
240.0 |
240.0 |
| C19 |
C18 |
C17 |
H18A |
120.0 |
120.0 |
| H18 |
C18 |
C17 |
H18A |
240.0 |
240.0 |
| H17 |
C17 |
C16 |
H16 |
55.7 |
60.0 |
| H17 |
C17 |
C16 |
H16A |
295.7 |
300.0 |
| C16 |
C17 |
H17 |
C18 |
238.6 |
240.0 |
| C16 |
C17 |
H17 |
H17A |
119.3 |
120.0 |
| C18 |
C17 |
H17 |
H17A |
240.7 |
240.0 |
| H17 |
C17 |
C18 |
H18 |
307.2 |
300.0 |
| H17 |
C17 |
C18 |
H18A |
67.2 |
60.0 |
| H17A |
C17 |
C16 |
H16 |
175.8 |
180.0 |
| H17A |
C17 |
C16 |
H16A |
55.8 |
60.0 |
| C16 |
C17 |
H17A |
C18 |
121.4 |
120.0 |
| C16 |
C17 |
H17A |
H17 |
240.7 |
240.0 |
| C18 |
C17 |
H17A |
H17 |
119.3 |
120.0 |
| H17A |
C17 |
C18 |
H18 |
187.2 |
180.0 |
| H17A |
C17 |
C18 |
H18A |
307.2 |
300.0 |
| C15 |
C20 |
C19 |
C18 |
305.5 |
300.0 |
| C19 |
C18 |
C17 |
H17 |
187.2 |
180.0 |
| C19 |
C18 |
C17 |
H17A |
67.2 |
60.0 |
| C17 |
C18 |
C19 |
H18 |
120.0 |
120.0 |
| C17 |
C18 |
C19 |
H18A |
240.0 |
240.0 |
| H18 |
C18 |
C19 |
H18A |
120.0 |
120.0 |
| H18 |
C18 |
C17 |
H17 |
307.2 |
300.0 |
| H18 |
C18 |
C17 |
H17A |
187.2 |
180.0 |
| C17 |
C18 |
H18 |
H18A |
118.8 |
120.0 |
| C19 |
C18 |
H18 |
H18A |
241.2 |
240.0 |
| H18A |
C18 |
C17 |
H17 |
67.2 |
60.0 |
| H18A |
C18 |
C17 |
H17A |
307.2 |
300.0 |
| C17 |
C18 |
H18A |
H18 |
241.2 |
240.0 |
| C19 |
C18 |
H18A |
H18 |
118.8 |
120.0 |
| C19 |
C20 |
C15 |
H15 |
298.4 |
300.0 |
| C15 |
C20 |
C19 |
H20 |
120.0 |
120.0 |
| C15 |
C20 |
C19 |
H20A |
240.0 |
240.0 |
| C20 |
C19 |
C18 |
H18 |
292.4 |
300.0 |
| C20 |
C19 |
C18 |
H18A |
172.4 |
180.0 |
| H19 |
C19 |
C20 |
H19A |
120.0 |
120.0 |
| H19 |
C19 |
C18 |
H18 |
52.4 |
60.0 |
| H19 |
C19 |
C18 |
H18A |
292.4 |
300.0 |
| C20 |
C19 |
H19 |
H19A |
241.1 |
240.0 |
| H19A |
C19 |
C18 |
H18 |
172.4 |
180.0 |
| H19A |
C19 |
C18 |
H18A |
52.4 |
59.9 |
| C20 |
C19 |
H19A |
H19 |
118.9 |
120.0 |
| H20 |
C20 |
C15 |
H15 |
58.4 |
60.0 |
| C15 |
C20 |
H20 |
C19 |
238.6 |
240.0 |
| C15 |
C20 |
H20 |
H20A |
119.3 |
120.0 |
| H20 |
C20 |
C19 |
H19 |
65.5 |
60.0 |
| H20 |
C20 |
C19 |
H19A |
305.5 |
300.0 |
| H20A |
C20 |
C15 |
H15 |
178.4 |
180.0 |
| C15 |
C20 |
H20A |
C19 |
121.4 |
120.0 |
| C15 |
C20 |
H20A |
H20 |
240.7 |
240.0 |
| H20A |
C20 |
C19 |
H19 |
305.5 |
300.0 |
| H20A |
C20 |
C19 |
H19A |
185.5 |
180.0 |