Atom Nomenclature for O19

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for O19

Atom Name (V3) Atom Name (V2)
O10 O10
C9 C9
C11 C11
C15 C15
C14 C14
C13 C13
N12 N12
N8 N8
C6 C6
C1 C1
C5 C5
C4 C4
C3 C3
C2 C2
C7 C7
N20 N20
C19 C19
N18 N18
C17 C17
C16 C16
N21 N21
C22 C22
C27 C27
C26 C26
C25 C25
C24 C24
C23 C23
N28 N28
C33 C33
C32 C32
O31 O31
C30 C30
C29 C29
H11 H11
H8 H8
H151 H151
H152 H152
H12 H12
H141 H141
H142 H142
H131 H131
H132 H132
H1 H1
H5 H5
H2 H2
H4 H4
H16 H16
H21 H21
H17 H17
H27 H27
H23 H23
H26 H26
H24 H24
H331 H331
H332 H332
H291 H291
H292 H292
H321 H321
H322 H322
H301 H301
H302 H302