PDB Chemical Component O0S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for O0S
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N2 |
C9 |
1.337 |
1.323 |
| N2 |
C6 |
1.337 |
1.323 |
| O1 |
C6 |
1.333 |
1.354 |
| O1 |
C5 |
1.352 |
1.360 |
| C10 |
C5 |
1.336 |
1.387 |
| C10 |
C11 |
1.356 |
1.381 |
| C9 |
C8 |
1.411 |
1.387 |
| C6 |
N1 |
1.387 |
1.323 |
| C5 |
C4 |
1.361 |
1.388 |
| C11 |
C2 |
1.373 |
1.388 |
| C4 |
C3 |
1.360 |
1.381 |
| C8 |
C7 |
1.378 |
1.385 |
| N1 |
C7 |
1.343 |
1.323 |
| C2 |
N |
1.375 |
1.400 |
| C2 |
C3 |
1.356 |
1.389 |
| N |
C1 |
1.364 |
1.348 |
| C1 |
C |
1.513 |
1.507 |
| C1 |
O |
1.136 |
1.212 |
| C4 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.080 |
1.080 |
| C8 |
H3 |
1.080 |
1.080 |
| C10 |
H4 |
1.080 |
1.080 |
| N |
H5 |
1.000 |
0.970 |
| C |
H6 |
1.100 |
1.090 |
| C |
H7 |
1.100 |
1.090 |
| C |
H8 |
1.100 |
1.090 |
| C11 |
H9 |
1.080 |
1.080 |
| C3 |
H10 |
1.080 |
1.080 |
| C9 |
H11 |
1.080 |
1.079 |
Bond Angles for O0S
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C9 |
H11 |
118.1 |
120.4 |
| C10 |
C11 |
C2 |
121.5 |
120.0 |
| C11 |
C10 |
H4 |
121.6 |
120.0 |
| C10 |
C11 |
H9 |
119.2 |
120.0 |
| C9 |
C8 |
H3 |
121.5 |
120.7 |
| C6 |
N1 |
C7 |
115.5 |
120.8 |
| C5 |
C4 |
C3 |
119.7 |
120.0 |
| C5 |
C4 |
H1 |
120.1 |
120.0 |
| C11 |
C2 |
C3 |
120.4 |
120.0 |
| C2 |
C11 |
H9 |
119.2 |
120.0 |
| C4 |
C3 |
C2 |
118.2 |
120.0 |
| C3 |
C4 |
H1 |
120.1 |
120.0 |
| C4 |
C3 |
H10 |
120.9 |
119.9 |
| C8 |
C7 |
H2 |
118.9 |
120.4 |
| N1 |
C7 |
H2 |
119.0 |
120.4 |
| C2 |
N |
H5 |
116.4 |
120.0 |
| C2 |
C3 |
H10 |
120.9 |
120.1 |
| N |
C1 |
C |
116.8 |
120.0 |
| N |
C1 |
O |
122.3 |
120.0 |
| C1 |
N |
H5 |
116.3 |
120.0 |
| C1 |
C |
H6 |
109.5 |
109.5 |
| C1 |
C |
H7 |
109.5 |
109.5 |
| C1 |
C |
H8 |
109.5 |
109.5 |
| H6 |
C |
H7 |
109.4 |
109.4 |
| H6 |
C |
H8 |
109.5 |
109.4 |
| H7 |
C |
H8 |
109.5 |
109.4 |
Torsion Angles for O0S
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C9 |
C8 |
H3 |
180.1 |
180.0 |
| O1 |
C5 |
C4 |
H1 |
352.9 |
359.7 |
| C10 |
C5 |
C4 |
C3 |
357.8 |
359.9 |
| C10 |
C5 |
C4 |
H1 |
177.8 |
179.7 |
| C10 |
C11 |
C2 |
C3 |
357.9 |
359.9 |
| C2 |
C11 |
C10 |
H9 |
180.0 |
180.1 |
| C9 |
C8 |
C7 |
H2 |
180.0 |
180.1 |
| C6 |
N1 |
C7 |
H2 |
179.9 |
179.9 |
| C5 |
C4 |
C3 |
C2 |
359.8 |
0.0 |
| C3 |
C4 |
C5 |
H1 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
H10 |
179.8 |
179.8 |
| C2 |
C11 |
C10 |
H4 |
179.8 |
180.1 |
| C10 |
C11 |
C2 |
H9 |
180.0 |
179.9 |
| C4 |
C3 |
C2 |
C11 |
2.2 |
0.1 |
| C11 |
C2 |
N |
H5 |
359.7 |
206.0 |
| C11 |
C2 |
C3 |
H10 |
182.2 |
180.3 |
| C5 |
C4 |
C3 |
H1 |
180.0 |
179.7 |
| C11 |
C2 |
C3 |
C4 |
2.2 |
0.1 |
| C2 |
C3 |
C4 |
H10 |
180.0 |
180.3 |
| N1 |
C7 |
C8 |
H2 |
180.0 |
179.9 |
| C8 |
C7 |
N1 |
H2 |
180.0 |
180.1 |
| C10 |
C11 |
C2 |
N |
174.7 |
180.0 |
| C4 |
C3 |
C2 |
N |
185.6 |
180.0 |
| C1 |
N |
C2 |
H5 |
180.0 |
180.0 |
| C3 |
C2 |
C11 |
H9 |
177.9 |
180.0 |
| C2 |
C3 |
C4 |
H1 |
179.8 |
180.3 |
| C4 |
C3 |
C2 |
H10 |
180.0 |
179.7 |
| C3 |
C2 |
N |
H5 |
176.3 |
26.1 |
| C2 |
N |
C1 |
H5 |
180.0 |
180.0 |
| N |
C1 |
C |
H6 |
176.6 |
60.0 |
| N |
C1 |
C |
H7 |
296.6 |
180.0 |
| N |
C1 |
C |
H8 |
56.6 |
300.0 |
| N |
C1 |
C |
O |
176.6 |
180.0 |
| C |
C1 |
N |
H5 |
358.5 |
5.9 |
| H6 |
C |
C1 |
H7 |
240.0 |
240.0 |
| H6 |
C |
C1 |
H8 |
120.0 |
120.0 |
| H7 |
C |
C1 |
H8 |
240.0 |
240.0 |
| N |
C1 |
O |
C |
183.6 |
180.0 |
| O |
C1 |
N |
H5 |
175.1 |
185.9 |
| O |
C1 |
C |
H6 |
0.0 |
240.0 |
| O |
C1 |
C |
H7 |
120.0 |
360.0 |
| O |
C1 |
C |
H8 |
240.0 |
120.0 |
| C5 |
C4 |
H1 |
C3 |
180.0 |
180.3 |
| H1 |
C4 |
C3 |
C2 |
179.8 |
180.3 |
| H1 |
C4 |
C3 |
H10 |
359.8 |
0.0 |
| H3 |
C8 |
C7 |
H2 |
360.0 |
0.0 |
| H4 |
C10 |
C11 |
C2 |
179.8 |
180.1 |
| H4 |
C10 |
C11 |
H9 |
359.8 |
360.0 |
| H5 |
N |
C1 |
C |
358.5 |
5.9 |
| H5 |
N |
C1 |
O |
175.1 |
185.9 |
| C1 |
C |
H6 |
H7 |
120.0 |
120.0 |
| C1 |
C |
H6 |
H8 |
240.0 |
240.0 |
| H7 |
C |
H6 |
H8 |
120.0 |
119.9 |
| C1 |
C |
H7 |
H6 |
240.0 |
240.0 |
| C1 |
C |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C |
H7 |
H8 |
240.0 |
240.1 |
| C1 |
C |
H8 |
H6 |
120.0 |
120.0 |
| C1 |
C |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C |
H8 |
H7 |
119.9 |
119.9 |
| C10 |
C11 |
H9 |
C2 |
180.0 |
180.1 |
| H9 |
C11 |
C10 |
H4 |
359.8 |
360.0 |
| H9 |
C11 |
C2 |
C3 |
177.9 |
180.0 |
| C4 |
C3 |
H10 |
C2 |
180.0 |
180.3 |
| H10 |
C3 |
C4 |
H1 |
359.8 |
0.0 |
| H11 |
C9 |
C8 |
H3 |
0.1 |
0.1 |