Atom Nomenclature for NZA

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for NZA

Atom Name (V3) Atom Name (V2)
CAM CAM
CAJ CAJ
CAT CAT
CLAC CLAC
CAK CAK
CAN CAN
CAV CAV
CAQ CAQ
NBB NBB
CAY CAY
CAS CAS
OAB OAB
OAA OAA
CBA CBA
CAO CAO
CAL CAL
CAU CAU
CLAD CLAD
CAP CAP
CAZ CAZ
CAX CAX
SAR SAR
CAW CAW
CAH CAH
CAF CAF
CAE CAE
CAG CAG
CAI CAI
HAM HAM
HAJ HAJ
HAK HAK
HAN HAN
HAQ1 1HAQ
HAQ2 2HAQ
HOAB HOAB
HAO HAO
HAL HAL
HAP HAP
HAH HAH
HAF HAF
HAE HAE
HAG HAG
HAI HAI