PDB Chemical Component NXZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NXZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
N1 |
1.479 |
1.486 |
| C5 |
N1 |
1.472 |
1.486 |
| N1 |
C14 |
1.379 |
1.387 |
| N18 |
C2 |
1.422 |
1.469 |
| C2 |
C3 |
1.514 |
1.543 |
| C2 |
C5 |
1.536 |
1.543 |
| C2 |
H2 |
1.100 |
1.090 |
| N19 |
C3 |
1.473 |
1.465 |
| C3 |
C4 |
1.508 |
1.544 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.101 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.090 |
| C12 |
C6 |
1.494 |
1.484 |
| C11 |
C6 |
1.433 |
1.393 |
| C6 |
C7 |
1.445 |
1.394 |
| C7 |
C8 |
1.424 |
1.381 |
| C7 |
H7 |
1.080 |
1.079 |
| C9 |
C8 |
1.417 |
1.383 |
| C8 |
H8 |
1.080 |
1.080 |
| C10 |
C9 |
1.438 |
1.384 |
| C9 |
H9 |
1.080 |
1.080 |
| C11 |
C10 |
1.424 |
1.381 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.080 |
| C13 |
C12 |
1.420 |
1.392 |
| C12 |
N17 |
1.389 |
1.334 |
| C14 |
C13 |
1.401 |
1.394 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
N15 |
1.396 |
1.330 |
| N15 |
C16 |
1.354 |
1.319 |
| C16 |
N17 |
1.348 |
1.316 |
| C16 |
H16 |
1.080 |
1.080 |
| N18 |
HN18 |
1.000 |
1.010 |
| N18 |
HN1A |
1.000 |
1.009 |
| C20 |
N19 |
1.495 |
1.457 |
| C24 |
N19 |
1.370 |
1.334 |
| C21 |
C20 |
1.534 |
1.529 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
| C22 |
C21 |
1.563 |
1.533 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.091 |
| C22 |
C23 |
1.544 |
1.531 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.090 |
| C23 |
C24 |
1.530 |
1.502 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.089 |
| C24 |
O25 |
1.227 |
1.213 |
Bond Angles for NXZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
N1 |
C14 |
118.3 |
111.0 |
| C5 |
N1 |
C14 |
125.1 |
111.0 |
| N1 |
C14 |
C13 |
123.1 |
120.5 |
| N1 |
C14 |
N15 |
119.1 |
120.4 |
| N18 |
C2 |
H2 |
105.7 |
110.4 |
| C3 |
C2 |
C5 |
102.8 |
105.1 |
| C3 |
C2 |
H2 |
114.7 |
110.3 |
| C2 |
C3 |
C4 |
105.9 |
105.0 |
| C2 |
C3 |
H3 |
110.0 |
110.3 |
| C5 |
C2 |
H2 |
112.0 |
110.4 |
| C2 |
C5 |
H5 |
112.8 |
110.5 |
| C2 |
C5 |
H5A |
112.8 |
110.4 |
| N19 |
C3 |
H3 |
101.6 |
110.3 |
| C4 |
C3 |
H3 |
111.0 |
110.4 |
| C3 |
C4 |
H4 |
113.7 |
110.4 |
| C3 |
C4 |
H4A |
113.7 |
110.4 |
| H4 |
C4 |
H4A |
104.9 |
110.5 |
| H5 |
C5 |
H5A |
106.0 |
110.5 |
| C6 |
C7 |
C8 |
119.7 |
119.8 |
| C6 |
C7 |
H7 |
120.1 |
120.1 |
| C8 |
C7 |
H7 |
120.2 |
120.1 |
| C7 |
C8 |
H8 |
120.5 |
119.9 |
| C9 |
C8 |
H8 |
120.5 |
120.0 |
| C10 |
C9 |
H9 |
119.0 |
119.9 |
| C11 |
C10 |
H10 |
120.6 |
120.0 |
| C13 |
C12 |
N17 |
120.6 |
119.0 |
| C12 |
N17 |
C16 |
121.2 |
120.9 |
| C14 |
C13 |
H13 |
121.1 |
120.9 |
| C14 |
N15 |
C16 |
124.1 |
120.9 |
| N15 |
C16 |
N17 |
118.5 |
121.9 |
| N15 |
C16 |
H16 |
120.8 |
119.0 |
| N17 |
C16 |
H16 |
120.8 |
119.1 |
| HN18 |
N18 |
HN1A |
109.4 |
111.0 |
| C21 |
C20 |
H20 |
108.1 |
109.3 |
| C21 |
C20 |
H20A |
108.1 |
109.1 |
| H20 |
C20 |
H20A |
110.8 |
109.3 |
| C22 |
C21 |
H21 |
108.2 |
109.6 |
| C22 |
C21 |
H21A |
108.2 |
109.7 |
| H21 |
C21 |
H21A |
110.7 |
109.6 |
| C23 |
C22 |
H22 |
108.2 |
109.6 |
| C23 |
C22 |
H22A |
108.2 |
109.7 |
| C22 |
C23 |
C24 |
114.9 |
109.9 |
| C22 |
C23 |
H23 |
107.7 |
109.4 |
| C22 |
C23 |
H23A |
107.7 |
109.4 |
| H22 |
C22 |
H22A |
110.6 |
109.7 |
| C24 |
C23 |
H23 |
107.7 |
109.5 |
| C24 |
C23 |
H23A |
107.7 |
109.2 |
| C23 |
C24 |
O25 |
118.4 |
118.2 |
| H23 |
C23 |
H23A |
111.2 |
109.3 |
Torsion Angles for NXZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
N1 |
C4 |
C14 |
179.5 |
240.4 |
| C4 |
N1 |
C14 |
C13 |
179.3 |
180.0 |
| C4 |
N1 |
C14 |
N15 |
359.1 |
360.0 |
| C4 |
N1 |
C5 |
C14 |
180.6 |
119.6 |
| C5 |
N1 |
C14 |
C13 |
359.9 |
295.5 |
| C5 |
N1 |
C14 |
N15 |
179.6 |
115.4 |
| N1 |
C14 |
C13 |
H13 |
359.4 |
360.0 |
| N1 |
C14 |
N15 |
C16 |
181.8 |
180.1 |
| C3 |
C2 |
N18 |
H2 |
235.9 |
237.9 |
| N18 |
C2 |
C3 |
H3 |
317.8 |
0.0 |
| C5 |
C2 |
N18 |
H2 |
122.4 |
122.3 |
| N18 |
C2 |
C5 |
H5 |
25.9 |
24.0 |
| N18 |
C2 |
C5 |
H5A |
265.8 |
261.4 |
| N18 |
C2 |
C3 |
H2 |
118.6 |
122.2 |
| C5 |
C2 |
C3 |
H2 |
238.2 |
241.0 |
| C3 |
C2 |
C5 |
H5 |
268.4 |
265.1 |
| C3 |
C2 |
C5 |
H5A |
148.3 |
142.6 |
| N19 |
C3 |
C2 |
H3 |
113.7 |
122.2 |
| C4 |
C3 |
C2 |
H3 |
239.9 |
241.1 |
| C2 |
C3 |
C4 |
H4 |
276.4 |
217.4 |
| C2 |
C3 |
C4 |
H4A |
156.4 |
94.9 |
| C2 |
C5 |
N1 |
C14 |
173.4 |
200.9 |
| N18 |
C2 |
C5 |
H2 |
241.2 |
237.8 |
| C3 |
C2 |
C5 |
H2 |
123.7 |
118.9 |
| C5 |
C2 |
C3 |
C4 |
317.3 |
360.0 |
| C5 |
C2 |
C3 |
H3 |
77.4 |
118.9 |
| H5 |
C5 |
C2 |
H5A |
120.0 |
122.5 |
| C3 |
C2 |
H2 |
C5 |
243.3 |
244.3 |
| H2 |
C2 |
C3 |
C4 |
79.1 |
118.9 |
| H2 |
C2 |
C3 |
H3 |
199.2 |
237.9 |
| H2 |
C2 |
C5 |
H5 |
144.7 |
146.2 |
| H2 |
C2 |
C5 |
H5A |
24.6 |
23.7 |
| N19 |
C3 |
C2 |
H2 |
312.9 |
0.0 |
| C2 |
C3 |
N19 |
H3 |
241.4 |
237.8 |
| C4 |
C3 |
N19 |
H3 |
119.3 |
122.2 |
| N19 |
C3 |
C4 |
H4 |
43.2 |
336.3 |
| N19 |
C3 |
C4 |
H4A |
283.2 |
213.8 |
| C3 |
C4 |
N1 |
C14 |
161.9 |
159.1 |
| C4 |
C3 |
C2 |
C5 |
317.3 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
79.1 |
118.9 |
| C2 |
C3 |
C4 |
H3 |
119.4 |
118.9 |
| N19 |
C3 |
C4 |
H3 |
246.2 |
237.8 |
| H4 |
C4 |
C3 |
H4A |
120.0 |
122.5 |
| H3 |
C3 |
C2 |
C5 |
77.4 |
118.9 |
| H3 |
C3 |
C2 |
H2 |
199.2 |
237.9 |
| C2 |
C3 |
H3 |
C4 |
243.1 |
244.3 |
| H3 |
C3 |
C4 |
H4 |
157.0 |
98.5 |
| H3 |
C3 |
C4 |
H4A |
37.0 |
336.0 |
| H4 |
C4 |
N1 |
C14 |
281.9 |
277.8 |
| H4 |
C4 |
C3 |
H3 |
157.0 |
98.5 |
| C3 |
C4 |
H4 |
H4A |
235.2 |
237.6 |
| H4A |
C4 |
N1 |
C14 |
41.9 |
40.3 |
| H4A |
C4 |
C3 |
H3 |
37.0 |
336.0 |
| C3 |
C4 |
H4A |
H4 |
124.8 |
122.4 |
| H5 |
C5 |
N1 |
C14 |
293.4 |
319.7 |
| H5 |
C5 |
C2 |
H2 |
144.7 |
146.2 |
| C2 |
C5 |
H5 |
H5A |
236.2 |
237.5 |
| H5A |
C5 |
N1 |
C14 |
53.4 |
82.2 |
| H5A |
C5 |
C2 |
H2 |
24.6 |
23.7 |
| C2 |
C5 |
H5A |
H5 |
123.9 |
122.5 |
| C12 |
C6 |
C7 |
H7 |
0.6 |
359.6 |
| C11 |
C6 |
C7 |
H7 |
180.8 |
180.0 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
| C6 |
C7 |
C8 |
H8 |
179.0 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
| H7 |
C7 |
C8 |
H8 |
359.0 |
0.0 |
| C9 |
C8 |
C7 |
H7 |
179.1 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| H8 |
C8 |
C7 |
H7 |
359.0 |
0.0 |
| C10 |
C9 |
C8 |
H8 |
180.3 |
180.0 |
| H9 |
C9 |
C8 |
H8 |
0.3 |
0.0 |
| C11 |
C10 |
C9 |
H9 |
180.5 |
179.9 |
| H10 |
C10 |
C9 |
H9 |
0.5 |
360.0 |
| H11 |
C11 |
C10 |
H10 |
359.4 |
360.0 |
| N1 |
C14 |
C13 |
C12 |
179.4 |
180.0 |
| C13 |
C12 |
N17 |
C16 |
0.2 |
359.5 |
| N15 |
C16 |
N17 |
C12 |
0.9 |
0.5 |
| C12 |
N17 |
C16 |
H16 |
181.0 |
180.3 |
| N1 |
C14 |
C13 |
N15 |
179.8 |
179.9 |
| C14 |
C13 |
C12 |
N17 |
359.6 |
0.2 |
| H13 |
C13 |
C12 |
N17 |
179.5 |
180.2 |
| N1 |
C14 |
N15 |
C13 |
180.2 |
180.1 |
| N15 |
C14 |
C13 |
H13 |
179.7 |
180.0 |
| C14 |
N15 |
C16 |
N17 |
358.1 |
359.7 |
| C14 |
N15 |
C16 |
H16 |
178.1 |
180.0 |
| C12 |
N17 |
C16 |
N15 |
0.9 |
0.5 |
| N17 |
C16 |
N15 |
H16 |
180.0 |
179.7 |
| N15 |
C16 |
N17 |
H16 |
180.0 |
180.3 |
| N15 |
C16 |
H16 |
N17 |
180.0 |
179.7 |
| HN18 |
N18 |
C2 |
H2 |
304.1 |
302.1 |
| HN1A |
N18 |
C2 |
H2 |
64.1 |
66.0 |
| C20 |
N19 |
C3 |
H3 |
191.7 |
2.1 |
| C24 |
N19 |
C3 |
H3 |
14.5 |
181.9 |
| H20 |
C20 |
C21 |
H20A |
120.0 |
119.4 |
| C21 |
C20 |
H20 |
H20A |
241.7 |
240.7 |
| C21 |
C20 |
H20A |
H20 |
118.3 |
119.4 |
| C22 |
C21 |
C20 |
H20 |
204.3 |
290.4 |
| C22 |
C21 |
C20 |
H20A |
84.3 |
170.9 |
| H21 |
C21 |
C22 |
H21A |
120.0 |
120.4 |
| H21 |
C21 |
C20 |
H20 |
324.3 |
50.2 |
| H21 |
C21 |
C20 |
H20A |
204.3 |
290.7 |
| C22 |
C21 |
H21 |
H21A |
241.6 |
239.5 |
| H21A |
C21 |
C20 |
H20 |
84.3 |
170.5 |
| H21A |
C21 |
C20 |
H20A |
324.3 |
51.1 |
| C22 |
C21 |
H21A |
H21 |
118.4 |
120.4 |
| C23 |
C22 |
C21 |
H21 |
289.4 |
172.6 |
| C23 |
C22 |
C21 |
H21A |
169.4 |
52.3 |
| H22 |
C22 |
C23 |
H22A |
119.9 |
120.5 |
| C24 |
C23 |
C22 |
H23 |
240.0 |
239.7 |
| C24 |
C23 |
C22 |
H23A |
120.0 |
119.9 |
| C22 |
C23 |
C24 |
O25 |
196.2 |
162.4 |
| H23 |
C23 |
C22 |
H23A |
240.1 |
240.2 |
| H22 |
C22 |
C21 |
H21 |
49.5 |
292.4 |
| H22 |
C22 |
C21 |
H21A |
289.5 |
172.0 |
| C23 |
C22 |
H22 |
H22A |
241.6 |
239.5 |
| H22 |
C22 |
C23 |
C24 |
198.7 |
289.0 |
| H22 |
C22 |
C23 |
H23 |
318.7 |
49.3 |
| H22 |
C22 |
C23 |
H23A |
78.7 |
169.0 |
| H22A |
C22 |
C21 |
H21 |
169.4 |
52.9 |
| H22A |
C22 |
C21 |
H21A |
49.4 |
292.5 |
| C23 |
C22 |
H22A |
H22 |
118.4 |
120.5 |
| H22A |
C22 |
C23 |
C24 |
78.7 |
168.5 |
| H22A |
C22 |
C23 |
H23 |
198.8 |
288.8 |
| H22A |
C22 |
C23 |
H23A |
318.7 |
48.6 |
| C24 |
C23 |
C22 |
H22 |
198.7 |
289.0 |
| C24 |
C23 |
C22 |
H22A |
78.7 |
168.5 |
| C22 |
C23 |
C24 |
H23 |
120.0 |
120.2 |
| C22 |
C23 |
C24 |
H23A |
240.0 |
240.0 |
| H23 |
C23 |
C24 |
H23A |
120.0 |
119.7 |
| H23 |
C23 |
C22 |
H22 |
318.7 |
49.3 |
| H23 |
C23 |
C22 |
H22A |
198.8 |
288.8 |
| C22 |
C23 |
H23 |
C24 |
235.5 |
239.5 |
| C22 |
C23 |
H23 |
H23A |
117.7 |
119.8 |
| C24 |
C23 |
H23 |
H23A |
242.2 |
240.3 |
| H23 |
C23 |
C24 |
O25 |
76.2 |
42.2 |
| H23A |
C23 |
C22 |
H22 |
78.7 |
169.0 |
| H23A |
C23 |
C22 |
H22A |
318.7 |
48.6 |
| C22 |
C23 |
H23A |
C24 |
124.5 |
120.4 |
| C22 |
C23 |
H23A |
H23 |
242.3 |
240.2 |
| C24 |
C23 |
H23A |
H23 |
117.8 |
119.8 |
| H23A |
C23 |
C24 |
O25 |
316.2 |
282.5 |
| O25 |
C24 |
C23 |
H23 |
76.2 |
42.2 |
| O25 |
C24 |
C23 |
H23A |
316.2 |
282.5 |