PDB Chemical Component NXY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NXY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C1 |
1.317 |
1.383 |
| C1 |
C2 |
1.448 |
1.377 |
| C1 |
S3 |
1.738 |
1.762 |
| S5 |
C2 |
1.802 |
1.758 |
| C2 |
C6 |
1.459 |
1.412 |
| C7 |
S3 |
1.784 |
1.814 |
| C8 |
C4 |
1.317 |
1.335 |
| C4 |
H4 |
1.080 |
1.080 |
| C8 |
S5 |
1.756 |
1.706 |
| C6 |
O9 |
1.245 |
1.218 |
| C6 |
O10 |
1.244 |
1.350 |
| C7 |
C11 |
1.487 |
1.508 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C8 |
H8 |
1.080 |
1.079 |
| O10 |
HO10 |
0.951 |
0.967 |
| C11 |
C12 |
1.430 |
1.383 |
| C11 |
C13 |
1.444 |
1.382 |
| C12 |
C14 |
1.414 |
1.383 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
C15 |
1.427 |
1.381 |
| C13 |
H13 |
1.080 |
1.081 |
| CL17 |
C14 |
1.714 |
1.736 |
| C14 |
C16 |
1.444 |
1.385 |
| C15 |
C16 |
1.432 |
1.383 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
CL18 |
1.706 |
1.736 |
Bond Angles for NXY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
S3 |
130.0 |
123.6 |
| C1 |
C2 |
C6 |
123.1 |
125.5 |
| S5 |
C2 |
C6 |
127.0 |
125.5 |
| C2 |
C6 |
O9 |
118.6 |
120.0 |
| C2 |
C6 |
O10 |
118.8 |
120.0 |
| C8 |
C4 |
H4 |
108.2 |
122.5 |
| O9 |
C6 |
O10 |
122.6 |
120.0 |
| C6 |
O10 |
HO10 |
109.5 |
114.0 |
| C11 |
C7 |
H7 |
109.5 |
109.5 |
| C11 |
C7 |
H7A |
109.5 |
109.5 |
| C7 |
C11 |
C12 |
117.0 |
120.0 |
| C7 |
C11 |
C13 |
118.1 |
120.0 |
| H7 |
C7 |
H7A |
109.4 |
109.5 |
| C12 |
C11 |
C13 |
125.0 |
120.0 |
| C11 |
C12 |
C14 |
114.8 |
120.0 |
| C11 |
C12 |
H12 |
122.6 |
120.0 |
| C11 |
C13 |
C15 |
120.1 |
120.1 |
| C11 |
C13 |
H13 |
120.0 |
119.9 |
| C14 |
C12 |
H12 |
122.6 |
120.0 |
| C12 |
C14 |
C16 |
120.7 |
119.9 |
| C15 |
C13 |
H13 |
120.0 |
120.0 |
| C13 |
C15 |
C16 |
114.8 |
120.0 |
| C13 |
C15 |
H15 |
122.6 |
120.0 |
| C14 |
C16 |
C15 |
124.5 |
120.0 |
| C14 |
C16 |
CL18 |
117.6 |
120.0 |
| C16 |
C15 |
H15 |
122.6 |
120.0 |
| C15 |
C16 |
CL18 |
117.8 |
120.0 |
Torsion Angles for NXY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C1 |
C2 |
C6 |
181.3 |
179.8 |
| S5 |
C2 |
C1 |
C6 |
179.7 |
180.0 |
| C1 |
C2 |
C6 |
O9 |
166.7 |
0.0 |
| C1 |
C2 |
C6 |
O10 |
347.7 |
180.0 |
| S3 |
C1 |
C2 |
C6 |
1.5 |
360.0 |
| C1 |
C2 |
S5 |
C6 |
180.3 |
180.0 |
| S5 |
C2 |
C6 |
O9 |
347.0 |
180.0 |
| S5 |
C2 |
C6 |
O10 |
168.1 |
0.0 |
| C6 |
C2 |
C1 |
S3 |
1.5 |
360.0 |
| O9 |
C6 |
C2 |
O10 |
179.0 |
180.0 |
| C2 |
C6 |
O10 |
HO10 |
179.0 |
180.0 |
| S5 |
C8 |
C4 |
H4 |
178.4 |
180.3 |
| C2 |
C6 |
O9 |
O10 |
181.1 |
180.0 |
| O9 |
C6 |
O10 |
HO10 |
0.0 |
360.0 |
| C2 |
C6 |
O10 |
O9 |
178.9 |
180.0 |
| H7 |
C7 |
C11 |
H7A |
120.0 |
120.0 |
| C12 |
C11 |
C7 |
C13 |
180.1 |
180.3 |
| C7 |
C11 |
C12 |
C14 |
180.0 |
180.0 |
| C7 |
C11 |
C12 |
H12 |
360.0 |
359.9 |
| C7 |
C11 |
C13 |
C15 |
177.8 |
180.0 |
| C7 |
C11 |
C13 |
H13 |
357.7 |
0.1 |
| C11 |
C7 |
H7 |
H7A |
240.0 |
240.0 |
| H7 |
C7 |
C11 |
C12 |
325.4 |
330.0 |
| H7 |
C7 |
C11 |
C13 |
145.3 |
149.7 |
| C11 |
C7 |
H7A |
H7 |
120.0 |
120.0 |
| H7A |
C7 |
C11 |
C12 |
205.4 |
210.0 |
| H7A |
C7 |
C11 |
C13 |
25.3 |
29.7 |
| H8 |
C8 |
C4 |
H4 |
358.4 |
360.0 |
| C12 |
C11 |
C7 |
H7 |
325.4 |
330.0 |
| C12 |
C11 |
C7 |
H7A |
205.4 |
210.0 |
| C7 |
C11 |
C12 |
C13 |
179.9 |
179.7 |
| C12 |
C11 |
C13 |
C15 |
357.6 |
359.7 |
| C12 |
C11 |
C13 |
H13 |
177.6 |
179.8 |
| C14 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C11 |
C12 |
C14 |
C16 |
2.4 |
359.9 |
| C13 |
C11 |
C7 |
H7 |
145.3 |
149.7 |
| C13 |
C11 |
C7 |
H7A |
25.3 |
29.7 |
| C7 |
C11 |
C13 |
C12 |
180.1 |
180.3 |
| C13 |
C11 |
C12 |
C14 |
0.1 |
0.3 |
| C13 |
C11 |
C12 |
H12 |
180.1 |
180.2 |
| C15 |
C13 |
C11 |
H13 |
180.0 |
179.9 |
| C11 |
C13 |
C15 |
C16 |
1.9 |
0.0 |
| C11 |
C13 |
C15 |
H15 |
181.9 |
180.0 |
| C14 |
C12 |
C11 |
C13 |
0.1 |
0.3 |
| C11 |
C12 |
C14 |
H12 |
180.0 |
179.9 |
| C12 |
C14 |
C16 |
C15 |
357.2 |
359.8 |
| C12 |
C14 |
C16 |
CL18 |
178.5 |
180.0 |
| H12 |
C12 |
C11 |
C13 |
180.1 |
180.2 |
| C11 |
C12 |
H12 |
C14 |
180.0 |
180.1 |
| H12 |
C12 |
C14 |
C16 |
182.3 |
180.0 |
| C11 |
C13 |
C15 |
H13 |
180.0 |
180.1 |
| C14 |
C16 |
C15 |
C13 |
0.5 |
0.2 |
| C16 |
C15 |
C13 |
H15 |
180.0 |
180.1 |
| C13 |
C15 |
C16 |
CL18 |
179.2 |
180.0 |
| C11 |
C13 |
H13 |
C15 |
180.0 |
179.9 |
| H13 |
C13 |
C15 |
C16 |
182.0 |
180.0 |
| H13 |
C13 |
C15 |
H15 |
2.0 |
359.9 |
| CL17 |
C14 |
C12 |
H12 |
5.3 |
0.1 |
| CL17 |
C14 |
C16 |
CL18 |
355.5 |
360.0 |
| C16 |
C14 |
C12 |
H12 |
182.3 |
180.0 |
| C13 |
C15 |
C16 |
C14 |
0.5 |
0.2 |
| C14 |
C16 |
C15 |
H15 |
180.5 |
180.3 |
| C15 |
C16 |
C14 |
CL18 |
178.6 |
179.8 |
| C16 |
C15 |
C13 |
H13 |
182.0 |
180.0 |
| C13 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
| C14 |
C16 |
C15 |
CL18 |
181.4 |
180.2 |
| H15 |
C15 |
C13 |
H13 |
2.0 |
359.9 |
| C13 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
| H15 |
C15 |
C16 |
CL18 |
359.2 |
0.0 |
| C14 |
C16 |
CL18 |
C15 |
178.7 |
179.8 |
| CL18 |
C16 |
C15 |
H15 |
359.2 |
0.0 |