PDB Chemical Component NXL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NXL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NAK |
CAO |
1.482 |
1.469 |
| CAJ |
CAO |
1.507 |
1.533 |
| CAJ |
N |
1.491 |
1.469 |
| OAL |
SAR |
1.531 |
1.522 |
| CAO |
CAH |
1.572 |
1.527 |
| CAN |
N |
1.327 |
1.347 |
| CAN |
OAC |
1.238 |
1.213 |
| OAG |
SAR |
1.525 |
1.421 |
| N |
CA |
1.461 |
1.469 |
| SAR |
OAE |
1.495 |
1.421 |
| SAR |
OAD |
1.529 |
1.523 |
| O |
C |
1.254 |
1.213 |
| CAH |
CB |
1.551 |
1.530 |
| CA |
C |
1.407 |
1.506 |
| CA |
CB |
1.536 |
1.532 |
| C |
NAA |
1.344 |
1.348 |
| NAK |
OAL |
1.838 |
1.463 |
| CAN |
H1 |
1.080 |
1.080 |
| CAJ |
H2 |
1.100 |
1.090 |
| CAJ |
H3 |
1.100 |
1.091 |
| CA |
H4 |
1.100 |
1.090 |
| NAA |
H5 |
1.000 |
0.970 |
| NAA |
H6 |
1.000 |
0.970 |
| CB |
H7 |
1.100 |
1.090 |
| CB |
H8 |
1.100 |
1.091 |
| CAH |
H9 |
1.100 |
1.090 |
| CAH |
H10 |
1.100 |
1.090 |
| CAO |
H11 |
1.100 |
1.090 |
| NAK |
H12 |
1.000 |
1.009 |
| OAD |
H13 |
0.950 |
0.968 |
Bond Angles for NXL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAK |
CAO |
H11 |
106.8 |
109.6 |
| CAJ |
CAO |
CAH |
113.1 |
109.3 |
| CAO |
CAJ |
H2 |
110.2 |
109.6 |
| CAO |
CAJ |
H3 |
110.2 |
109.5 |
| CAJ |
CAO |
H11 |
106.5 |
109.5 |
| CAJ |
N |
CA |
119.2 |
118.7 |
| OAL |
SAR |
OAE |
115.6 |
106.4 |
| OAL |
SAR |
OAD |
105.3 |
107.2 |
| NAK |
OAL |
SAR |
119.6 |
114.0 |
| CAO |
CAH |
H9 |
108.0 |
109.3 |
| CAO |
CAH |
H10 |
108.0 |
109.7 |
| CAN |
N |
CA |
117.8 |
120.7 |
| N |
CAN |
H1 |
116.7 |
120.0 |
| N |
CA |
C |
108.1 |
109.6 |
| N |
CA |
CB |
109.4 |
108.8 |
| N |
CA |
H4 |
107.7 |
109.6 |
| OAD |
SAR |
OAE |
105.3 |
106.4 |
| SAR |
OAD |
H13 |
109.5 |
114.0 |
| O |
C |
NAA |
124.7 |
119.9 |
| CAH |
CB |
H7 |
109.0 |
109.5 |
| CAH |
CB |
H8 |
109.1 |
109.5 |
| C |
CA |
CB |
116.2 |
109.6 |
| CA |
C |
NAA |
114.5 |
120.0 |
| C |
CA |
H4 |
108.4 |
109.6 |
| CB |
CA |
H4 |
106.8 |
109.7 |
| CA |
CB |
H7 |
109.1 |
109.5 |
| CA |
CB |
H8 |
109.1 |
109.5 |
| C |
NAA |
H5 |
120.0 |
120.0 |
| C |
NAA |
H6 |
120.0 |
120.1 |
| OAL |
NAK |
H12 |
106.1 |
111.0 |
| H2 |
CAJ |
H3 |
109.4 |
109.7 |
| H5 |
NAA |
H6 |
120.0 |
120.0 |
| H7 |
CB |
H8 |
109.5 |
109.4 |
| H9 |
CAH |
H10 |
109.5 |
109.5 |
Torsion Angles for NXL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAK |
CAO |
CAJ |
H2 |
196.8 |
54.8 |
| NAK |
CAO |
CAJ |
H3 |
317.7 |
294.4 |
| CAJ |
CAO |
NAK |
H11 |
117.2 |
120.1 |
| NAK |
CAO |
CAH |
H9 |
38.7 |
58.6 |
| NAK |
CAO |
CAH |
H10 |
157.0 |
298.6 |
| NAK |
CAO |
CAJ |
H11 |
242.6 |
239.9 |
| CAO |
CAJ |
N |
CA |
61.0 |
306.6 |
| CAJ |
CAO |
CAH |
H9 |
167.5 |
178.5 |
| CAJ |
CAO |
CAH |
H10 |
285.7 |
58.5 |
| H2 |
CAJ |
CAO |
H3 |
239.1 |
120.4 |
| CAN |
N |
CAJ |
CA |
184.1 |
179.8 |
| CAJ |
N |
CAN |
H1 |
358.1 |
175.2 |
| CAJ |
N |
CA |
C |
66.9 |
173.1 |
| CAJ |
N |
CA |
CB |
299.5 |
53.4 |
| CAJ |
N |
CA |
H4 |
183.8 |
293.4 |
| OAD |
SAR |
OAL |
OAE |
244.3 |
246.5 |
| OAL |
SAR |
OAD |
H13 |
122.6 |
180.0 |
| SAR |
OAL |
NAK |
H12 |
121.5 |
56.1 |
| CAH |
CAO |
CAJ |
H2 |
69.9 |
294.9 |
| CAH |
CAO |
CAJ |
H3 |
190.8 |
174.5 |
| CAJ |
CAO |
CAH |
H11 |
243.9 |
240.0 |
| CAO |
CAH |
CB |
H7 |
76.4 |
301.6 |
| CAO |
CAH |
CB |
H8 |
195.9 |
181.6 |
| H9 |
CAH |
CAO |
H10 |
241.7 |
120.0 |
| CAJ |
N |
CAN |
CA |
175.9 |
180.2 |
| CAN |
N |
CA |
C |
242.9 |
353.4 |
| CAN |
N |
CA |
CB |
115.5 |
233.6 |
| CAN |
N |
CA |
H4 |
359.8 |
113.7 |
| OAG |
SAR |
OAD |
H13 |
242.3 |
293.5 |
| CA |
N |
CAN |
H1 |
182.2 |
354.9 |
| C |
CA |
N |
CB |
127.4 |
119.8 |
| N |
CA |
C |
NAA |
177.3 |
134.9 |
| C |
CA |
N |
H4 |
243.1 |
239.7 |
| CB |
CA |
N |
H4 |
115.7 |
119.9 |
| N |
CA |
CB |
H7 |
287.2 |
65.3 |
| N |
CA |
CB |
H8 |
167.7 |
185.3 |
| OAL |
SAR |
OAE |
OAD |
244.3 |
245.9 |
| NAK |
OAL |
SAR |
OAE |
176.9 |
188.5 |
| OAE |
SAR |
OAD |
H13 |
0.0 |
66.5 |
| OAL |
SAR |
OAD |
OAE |
122.6 |
113.5 |
| NAK |
OAL |
SAR |
OAD |
61.1 |
75.0 |
| O |
C |
CA |
CB |
125.0 |
74.2 |
| CA |
C |
O |
NAA |
175.2 |
180.0 |
| O |
C |
CA |
H4 |
245.2 |
194.6 |
| O |
C |
NAA |
H5 |
0.0 |
179.9 |
| O |
C |
NAA |
H6 |
180.0 |
360.0 |
| CAJ |
CAO |
CAH |
CB |
46.6 |
298.3 |
| CAH |
CB |
CA |
H4 |
163.7 |
65.2 |
| CA |
CB |
CAH |
H7 |
239.7 |
120.0 |
| CA |
CB |
CAH |
H8 |
120.2 |
240.1 |
| H7 |
CB |
CAH |
H8 |
240.5 |
120.0 |
| N |
CA |
C |
CB |
236.7 |
240.7 |
| N |
CA |
C |
H4 |
116.5 |
120.3 |
| O |
C |
CA |
NAA |
184.4 |
180.0 |
| CB |
CA |
C |
H4 |
239.8 |
239.6 |
| C |
CA |
CB |
H7 |
164.5 |
305.6 |
| C |
CA |
CB |
H8 |
45.0 |
65.6 |
| CA |
C |
NAA |
H5 |
184.6 |
360.0 |
| CA |
C |
NAA |
H6 |
4.6 |
180.0 |
| N |
CA |
CB |
C |
122.7 |
119.8 |
| N |
CA |
CB |
H4 |
243.7 |
240.1 |
| CAH |
CB |
CA |
H7 |
120.2 |
240.0 |
| CAH |
CB |
CA |
H8 |
239.7 |
120.0 |
| CB |
CA |
C |
NAA |
300.7 |
254.1 |
| C |
CA |
CB |
H4 |
121.1 |
120.3 |
| H7 |
CB |
CA |
H8 |
119.5 |
240.0 |
| NAA |
C |
CA |
CB |
300.7 |
254.1 |
| NAA |
C |
CA |
H4 |
60.9 |
14.5 |
| H5 |
NAA |
C |
H6 |
180.0 |
180.0 |
| OAL |
NAK |
CAO |
H11 |
193.7 |
330.0 |
| H1 |
CAN |
N |
CA |
182.2 |
354.9 |
| H2 |
CAJ |
CAO |
CAH |
69.9 |
294.9 |
| CAO |
CAJ |
H2 |
H3 |
121.3 |
239.7 |
| H2 |
CAJ |
CAO |
H11 |
314.2 |
174.9 |
| H2 |
CAJ |
N |
CA |
301.4 |
66.4 |
| H3 |
CAJ |
CAO |
CAH |
190.8 |
174.5 |
| CAO |
CAJ |
H3 |
H2 |
238.7 |
120.3 |
| H3 |
CAJ |
CAO |
H11 |
75.1 |
54.5 |
| H3 |
CAJ |
N |
CA |
180.5 |
186.9 |
| N |
CA |
H4 |
C |
243.3 |
239.7 |
| N |
CA |
H4 |
CB |
117.4 |
119.4 |
| C |
CA |
H4 |
CB |
234.1 |
239.6 |
| H4 |
CA |
C |
NAA |
60.9 |
14.5 |
| H4 |
CA |
CB |
H7 |
43.5 |
185.2 |
| H4 |
CA |
CB |
H8 |
284.0 |
305.2 |
| C |
NAA |
H5 |
H6 |
180.0 |
180.0 |
| C |
NAA |
H6 |
H5 |
180.0 |
180.0 |
| CAH |
CB |
H7 |
H8 |
119.3 |
239.9 |
| H7 |
CB |
CA |
H4 |
43.5 |
185.2 |
| CA |
CB |
H7 |
H8 |
240.8 |
120.0 |
| CAH |
CB |
H8 |
H7 |
240.8 |
120.1 |
| H8 |
CB |
CA |
H4 |
284.0 |
305.2 |
| CA |
CB |
H8 |
H7 |
119.3 |
240.0 |
| CAO |
CAH |
H9 |
H10 |
117.3 |
239.8 |
| H9 |
CAH |
CB |
H7 |
315.6 |
61.4 |
| H9 |
CAH |
CB |
H8 |
75.0 |
301.3 |
| CAO |
CAH |
H10 |
H9 |
242.7 |
119.9 |
| H10 |
CAH |
CB |
H7 |
197.3 |
181.4 |
| H10 |
CAH |
CB |
H8 |
316.8 |
61.3 |
| CAJ |
CAO |
H11 |
CAH |
120.6 |
119.9 |
| H11 |
CAO |
CAJ |
H2 |
314.2 |
174.9 |
| H11 |
CAO |
CAJ |
H3 |
75.1 |
54.5 |
| H11 |
CAO |
CAH |
H9 |
283.6 |
298.5 |
| H11 |
CAO |
CAH |
H10 |
41.9 |
178.4 |
| H12 |
NAK |
CAO |
H11 |
315.5 |
93.9 |
| H12 |
NAK |
OAL |
SAR |
121.5 |
56.1 |
| H13 |
OAD |
SAR |
OAE |
0.0 |
66.5 |