PDB Chemical Component NXA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NXA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.482 |
1.463 |
N |
C1 |
1.359 |
1.348 |
N |
H |
0.995 |
0.970 |
CA |
C |
1.550 |
1.506 |
CA |
CB |
1.522 |
1.529 |
CA |
HA |
1.100 |
1.090 |
C |
O |
1.302 |
1.342 |
C |
OXT |
1.278 |
1.209 |
O |
HB |
0.950 |
0.966 |
CB |
HBC1 |
1.100 |
1.090 |
CB |
HBC2 |
1.100 |
1.090 |
CB |
HBC3 |
1.100 |
1.089 |
OD1 |
C1 |
1.315 |
1.346 |
OD1 |
HD1 |
0.950 |
0.967 |
OD2 |
C1 |
1.288 |
1.214 |
Bond Angles for NXA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
C1 |
115.0 |
120.0 |
CA |
N |
H |
122.5 |
120.0 |
N |
CA |
C |
122.3 |
109.5 |
N |
CA |
CB |
97.6 |
109.5 |
N |
CA |
HA |
108.4 |
109.4 |
C1 |
N |
H |
122.5 |
119.9 |
N |
C1 |
OD1 |
108.7 |
120.0 |
N |
C1 |
OD2 |
125.7 |
120.0 |
C |
CA |
CB |
105.9 |
109.5 |
C |
CA |
HA |
100.4 |
109.4 |
CA |
C |
O |
112.0 |
120.1 |
CA |
C |
OXT |
136.7 |
120.0 |
CB |
CA |
HA |
124.1 |
109.5 |
CA |
CB |
HBC1 |
109.5 |
109.4 |
CA |
CB |
HBC2 |
109.5 |
109.5 |
CA |
CB |
HBC3 |
109.4 |
109.5 |
O |
C |
OXT |
111.3 |
119.9 |
C |
O |
HB |
112.0 |
120.1 |
HBC1 |
CB |
HBC2 |
109.4 |
109.5 |
HBC1 |
CB |
HBC3 |
109.5 |
109.4 |
HBC2 |
CB |
HBC3 |
109.5 |
109.5 |
C1 |
OD1 |
HD1 |
108.7 |
120.0 |
OD1 |
C1 |
OD2 |
125.6 |
120.0 |
Torsion Angles for NXA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N |
CA |
H |
180.0 |
180.0 |
CA |
N |
C1 |
OD1 |
172.1 |
180.0 |
CA |
N |
C1 |
OD2 |
352.2 |
0.1 |
C |
CA |
N |
CB |
114.3 |
120.0 |
C |
CA |
N |
HA |
244.2 |
240.1 |
N |
CA |
C |
O |
359.8 |
180.0 |
N |
CA |
C |
OXT |
179.7 |
0.0 |
CB |
CA |
N |
HA |
129.9 |
120.0 |
N |
CA |
CB |
HBC1 |
86.6 |
60.0 |
N |
CA |
CB |
HBC2 |
206.6 |
180.0 |
N |
CA |
CB |
HBC3 |
326.6 |
300.1 |
CA |
N |
C1 |
H |
180.0 |
180.0 |
C1 |
N |
CA |
C |
293.5 |
210.0 |
C1 |
N |
CA |
CB |
179.2 |
89.9 |
C1 |
N |
CA |
HA |
49.4 |
329.9 |
N |
C1 |
OD1 |
HD1 |
180.0 |
180.0 |
OD1 |
C1 |
N |
OD2 |
179.8 |
179.9 |
CA |
N |
H |
C1 |
180.0 |
180.0 |
H |
N |
CA |
C |
113.5 |
30.0 |
H |
N |
CA |
CB |
359.2 |
270.0 |
H |
N |
CA |
HA |
229.3 |
149.9 |
H |
N |
C1 |
OD1 |
352.1 |
359.9 |
H |
N |
C1 |
OD2 |
172.3 |
180.1 |
C |
CA |
N |
C1 |
293.5 |
210.0 |
C |
CA |
N |
H |
113.5 |
30.0 |
N |
CA |
C |
CB |
249.9 |
239.9 |
N |
CA |
C |
HA |
119.7 |
120.0 |
CB |
CA |
C |
HA |
229.8 |
240.0 |
C |
CA |
CB |
HBC1 |
319.8 |
299.9 |
C |
CA |
CB |
HBC2 |
79.8 |
59.9 |
C |
CA |
CB |
HBC3 |
199.8 |
180.0 |
O |
C |
CA |
OXT |
180.1 |
179.9 |
CA |
C |
O |
HB |
180.0 |
179.9 |
CB |
CA |
N |
C1 |
179.2 |
89.9 |
CB |
CA |
N |
H |
359.2 |
270.0 |
N |
CA |
CB |
C |
126.8 |
120.1 |
N |
CA |
CB |
HA |
241.7 |
240.0 |
C |
CA |
CB |
HA |
114.9 |
119.9 |
CB |
CA |
C |
O |
109.8 |
300.0 |
CB |
CA |
C |
OXT |
289.8 |
120.1 |
HBC1 |
CB |
CA |
HBC2 |
240.0 |
240.0 |
HBC1 |
CB |
CA |
HBC3 |
120.0 |
119.9 |
HBC2 |
CB |
CA |
HBC3 |
240.0 |
239.9 |
HA |
CA |
N |
C1 |
49.4 |
329.9 |
HA |
CA |
N |
H |
229.3 |
149.9 |
N |
CA |
HA |
C |
230.7 |
240.0 |
N |
CA |
HA |
CB |
113.2 |
120.0 |
C |
CA |
HA |
CB |
242.5 |
240.0 |
HA |
CA |
C |
O |
240.1 |
60.0 |
HA |
CA |
C |
OXT |
60.0 |
240.1 |
HA |
CA |
CB |
HBC1 |
205.0 |
180.0 |
HA |
CA |
CB |
HBC2 |
324.9 |
300.0 |
HA |
CA |
CB |
HBC3 |
85.0 |
60.1 |
O |
C |
CA |
CB |
109.8 |
300.0 |
O |
C |
CA |
HA |
240.1 |
60.0 |
CA |
C |
O |
OXT |
180.0 |
180.1 |
OXT |
C |
CA |
CB |
289.8 |
120.1 |
OXT |
C |
CA |
HA |
60.0 |
240.1 |
CA |
C |
OXT |
O |
180.1 |
179.9 |
OXT |
C |
O |
HB |
0.0 |
359.9 |
HB |
O |
C |
OXT |
0.0 |
359.9 |
HBC1 |
CB |
CA |
HA |
205.0 |
180.0 |
CA |
CB |
HBC1 |
HBC2 |
120.0 |
120.0 |
CA |
CB |
HBC1 |
HBC3 |
240.0 |
240.0 |
HBC2 |
CB |
HBC1 |
HBC3 |
120.0 |
120.1 |
HBC2 |
CB |
CA |
HA |
324.9 |
300.0 |
CA |
CB |
HBC2 |
HBC1 |
240.0 |
240.1 |
CA |
CB |
HBC2 |
HBC3 |
120.0 |
120.1 |
HBC1 |
CB |
HBC2 |
HBC3 |
240.0 |
240.0 |
HBC3 |
CB |
CA |
HA |
85.0 |
60.1 |
CA |
CB |
HBC3 |
HBC1 |
120.0 |
119.9 |
CA |
CB |
HBC3 |
HBC2 |
240.0 |
239.9 |
HBC1 |
CB |
HBC3 |
HBC2 |
120.0 |
120.0 |
OD1 |
C1 |
N |
H |
352.1 |
359.9 |
N |
C1 |
OD1 |
OD2 |
180.2 |
180.1 |
HD1 |
OD1 |
C1 |
OD2 |
359.8 |
359.8 |
OD2 |
C1 |
N |
H |
172.3 |
180.1 |
N |
C1 |
OD2 |
OD1 |
179.8 |
179.9 |
OD2 |
C1 |
OD1 |
HD1 |
359.8 |
359.8 |