PDB Chemical Component NX5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NX5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S2 |
C1 |
1.773 |
1.761 |
| C1 |
C16 |
1.428 |
1.405 |
| C1 |
C12 |
1.447 |
1.391 |
| S2 |
C3 |
1.821 |
1.810 |
| C4 |
C3 |
1.510 |
1.508 |
| C3 |
H3 |
1.100 |
1.089 |
| C3 |
H3A |
1.101 |
1.089 |
| C7 |
C4 |
1.440 |
1.382 |
| C5 |
C4 |
1.447 |
1.383 |
| C8 |
C5 |
1.416 |
1.383 |
| C5 |
H5 |
1.080 |
1.080 |
| C9 |
C6 |
1.432 |
1.383 |
| C6 |
C7 |
1.426 |
1.382 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
H7 |
1.080 |
1.080 |
| C9 |
C8 |
1.437 |
1.385 |
| CL11 |
C8 |
1.730 |
1.737 |
| CL10 |
C9 |
1.715 |
1.736 |
| C12 |
C13 |
1.437 |
1.380 |
| C12 |
H12 |
1.080 |
1.079 |
| C13 |
C14 |
1.449 |
1.387 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
C14 |
1.437 |
1.377 |
| C14 |
H14 |
1.080 |
1.080 |
| C16 |
C15 |
1.438 |
1.399 |
| C15 |
H15 |
1.080 |
1.080 |
| C17 |
C16 |
1.441 |
1.472 |
| O19 |
C17 |
1.244 |
1.216 |
| C17 |
O18 |
1.244 |
1.347 |
| O18 |
HO18 |
0.950 |
0.968 |
Bond Angles for NX5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S2 |
C1 |
C16 |
116.8 |
120.2 |
| S2 |
C1 |
C12 |
121.8 |
120.2 |
| C12 |
C1 |
C16 |
121.4 |
119.6 |
| C1 |
C16 |
C15 |
122.0 |
119.6 |
| C1 |
C12 |
C13 |
117.2 |
120.1 |
| C1 |
C12 |
H12 |
121.4 |
119.9 |
| S2 |
C3 |
H3 |
109.6 |
109.5 |
| S2 |
C3 |
H3A |
109.6 |
109.5 |
| C4 |
C3 |
H3 |
109.6 |
109.5 |
| C4 |
C3 |
H3A |
109.6 |
109.5 |
| H3 |
C3 |
H3A |
109.4 |
109.5 |
| C8 |
C5 |
H5 |
122.4 |
120.0 |
| C9 |
C6 |
H6 |
122.6 |
120.0 |
| C7 |
C6 |
H6 |
122.6 |
120.0 |
| C6 |
C7 |
H7 |
119.5 |
120.0 |
| C13 |
C12 |
H12 |
121.4 |
120.0 |
| C12 |
C13 |
C14 |
120.7 |
120.4 |
| C12 |
C13 |
H13 |
119.6 |
119.8 |
| C14 |
C13 |
H13 |
119.6 |
119.8 |
| C13 |
C14 |
H14 |
119.0 |
119.8 |
| C15 |
C14 |
H14 |
119.0 |
119.8 |
| C16 |
C15 |
H15 |
121.7 |
120.0 |
| C17 |
O18 |
HO18 |
109.5 |
117.0 |
Torsion Angles for NX5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C1 |
S2 |
C16 |
182.0 |
180.3 |
| S2 |
C1 |
C16 |
C15 |
182.2 |
180.3 |
| S2 |
C1 |
C12 |
C13 |
177.6 |
179.7 |
| S2 |
C1 |
C12 |
H12 |
357.6 |
359.7 |
| S2 |
C1 |
C16 |
C12 |
182.0 |
180.3 |
| C16 |
C1 |
C12 |
C13 |
359.8 |
360.0 |
| C16 |
C1 |
C12 |
H12 |
179.8 |
180.0 |
| C1 |
C16 |
C15 |
H15 |
179.7 |
180.0 |
| S2 |
C1 |
C12 |
C16 |
177.9 |
179.7 |
| C12 |
C1 |
C16 |
C15 |
0.2 |
0.0 |
| C13 |
C12 |
C1 |
H12 |
180.0 |
179.9 |
| C1 |
C12 |
C13 |
C14 |
0.4 |
0.0 |
| C1 |
C12 |
C13 |
H13 |
180.4 |
180.0 |
| C3 |
S2 |
C1 |
C16 |
192.5 |
180.0 |
| C3 |
S2 |
C1 |
C12 |
14.5 |
0.3 |
| C4 |
C3 |
S2 |
H3 |
240.0 |
240.0 |
| C4 |
C3 |
S2 |
H3A |
120.0 |
120.0 |
| H3 |
C3 |
S2 |
H3A |
240.0 |
240.0 |
| S2 |
C3 |
C4 |
H3 |
120.0 |
120.0 |
| S2 |
C3 |
C4 |
H3A |
240.0 |
240.0 |
| H3 |
C3 |
C4 |
H3A |
120.0 |
120.1 |
| S2 |
C3 |
H3 |
H3A |
120.1 |
120.0 |
| C4 |
C3 |
H3 |
H3A |
239.9 |
240.0 |
| S2 |
C3 |
H3A |
H3 |
239.9 |
240.0 |
| C4 |
C3 |
H3A |
H3 |
120.1 |
120.0 |
| C7 |
C4 |
C3 |
H3 |
147.0 |
149.7 |
| C7 |
C4 |
C3 |
H3A |
27.0 |
29.6 |
| C5 |
C4 |
C3 |
H3 |
326.2 |
330.1 |
| C5 |
C4 |
C3 |
H3A |
206.2 |
210.0 |
| C7 |
C6 |
C9 |
H6 |
180.0 |
180.0 |
| C9 |
C6 |
C7 |
H7 |
181.1 |
180.0 |
| C9 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
1.1 |
360.0 |
| H7 |
C7 |
C6 |
H6 |
1.1 |
360.0 |
| C9 |
C8 |
C5 |
H5 |
179.1 |
180.0 |
| C8 |
C9 |
C6 |
H6 |
177.5 |
180.3 |
| CL11 |
C8 |
C5 |
H5 |
0.1 |
0.0 |
| CL10 |
C9 |
C6 |
H6 |
355.0 |
360.0 |
| C13 |
C12 |
C1 |
C16 |
359.8 |
360.0 |
| C1 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
| C12 |
C13 |
C14 |
H14 |
179.4 |
180.0 |
| H12 |
C12 |
C1 |
C16 |
179.8 |
180.0 |
| C1 |
C12 |
H12 |
C13 |
180.0 |
179.9 |
| H12 |
C12 |
C13 |
C14 |
180.4 |
180.0 |
| H12 |
C12 |
C13 |
H13 |
0.4 |
359.9 |
| C14 |
C13 |
C12 |
H12 |
180.4 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
0.4 |
359.9 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
| H13 |
C13 |
C14 |
H14 |
359.4 |
0.0 |
| C1 |
C16 |
C15 |
C14 |
359.7 |
0.0 |
| C15 |
C14 |
C13 |
H13 |
179.5 |
180.0 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| H14 |
C14 |
C13 |
H13 |
359.4 |
0.0 |
| C16 |
C15 |
C14 |
H14 |
180.5 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
0.5 |
0.1 |
| C17 |
C16 |
C15 |
H15 |
0.5 |
0.0 |
| O19 |
C17 |
O18 |
HO18 |
360.0 |
360.0 |