PDB Chemical Component NX3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NX3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
S1 |
1.709 |
1.759 |
| S1 |
C5 |
1.717 |
1.706 |
| C6 |
C2 |
1.485 |
1.414 |
| C3 |
C2 |
1.336 |
1.376 |
| S10 |
C3 |
1.740 |
1.762 |
| C3 |
C4 |
1.461 |
1.383 |
| C4 |
C5 |
1.325 |
1.334 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
H5 |
1.080 |
1.081 |
| O8 |
C6 |
1.224 |
1.218 |
| C6 |
N7 |
1.335 |
1.348 |
| S9 |
N7 |
1.626 |
1.657 |
| N7 |
HN7 |
1.000 |
0.969 |
| O21 |
S9 |
1.432 |
1.421 |
| C22 |
S9 |
1.762 |
1.762 |
| S9 |
O20 |
1.427 |
1.421 |
| S10 |
C11 |
1.758 |
1.814 |
| C12 |
C11 |
1.504 |
1.507 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C13 |
C12 |
1.455 |
1.383 |
| C17 |
C12 |
1.443 |
1.382 |
| C14 |
C13 |
1.424 |
1.382 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
C14 |
1.430 |
1.383 |
| C14 |
H14 |
1.081 |
1.080 |
| CL19 |
C15 |
1.731 |
1.736 |
| C15 |
C16 |
1.448 |
1.385 |
| CL18 |
C16 |
1.753 |
1.736 |
| C16 |
C17 |
1.419 |
1.383 |
| C17 |
H17 |
1.080 |
1.080 |
| C23 |
C22 |
1.450 |
1.382 |
| C22 |
C27 |
1.450 |
1.381 |
| C24 |
C23 |
1.449 |
1.384 |
| C23 |
H23 |
1.080 |
1.080 |
| C24 |
C25 |
1.454 |
1.381 |
| C24 |
H24 |
1.080 |
1.079 |
| C25 |
C26 |
1.458 |
1.389 |
| C25 |
H25 |
1.080 |
1.080 |
| C26 |
C27 |
1.437 |
1.390 |
| C26 |
N28 |
1.366 |
1.396 |
| C27 |
H27 |
1.080 |
1.080 |
| N28 |
HN28 |
0.999 |
0.970 |
| N28 |
HN2A |
1.000 |
0.970 |
Bond Angles for NX3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C5 |
92.8 |
91.7 |
| S1 |
C5 |
C4 |
112.1 |
111.3 |
| S1 |
C5 |
H5 |
123.9 |
124.3 |
| C3 |
C4 |
C5 |
110.9 |
115.1 |
| C3 |
C4 |
H4 |
124.6 |
122.5 |
| C5 |
C4 |
H4 |
124.5 |
122.4 |
| C4 |
C5 |
H5 |
124.0 |
124.4 |
| C6 |
N7 |
HN7 |
119.4 |
120.0 |
| S9 |
N7 |
HN7 |
119.4 |
120.0 |
| S10 |
C11 |
H11 |
109.4 |
109.4 |
| S10 |
C11 |
H11A |
109.3 |
109.5 |
| C12 |
C11 |
H11 |
109.3 |
109.5 |
| C12 |
C11 |
H11A |
109.3 |
109.5 |
| H11 |
C11 |
H11A |
109.6 |
109.5 |
| C14 |
C13 |
H13 |
119.3 |
120.0 |
| C15 |
C14 |
H14 |
122.3 |
120.0 |
| C15 |
C16 |
C17 |
120.4 |
119.9 |
| C16 |
C17 |
H17 |
121.8 |
119.9 |
| C23 |
C22 |
C27 |
122.5 |
120.1 |
| C22 |
C27 |
C26 |
117.8 |
119.9 |
| C22 |
C27 |
H27 |
121.1 |
120.1 |
| C24 |
C23 |
H23 |
119.8 |
119.9 |
| C25 |
C24 |
H24 |
121.7 |
120.0 |
| C24 |
C25 |
C26 |
123.1 |
120.0 |
| C24 |
C25 |
H25 |
118.4 |
120.0 |
| C26 |
C25 |
H25 |
118.4 |
120.0 |
| C25 |
C26 |
C27 |
119.6 |
119.8 |
| C25 |
C26 |
N28 |
121.5 |
120.1 |
| C27 |
C26 |
N28 |
118.8 |
120.1 |
| C26 |
C27 |
H27 |
121.1 |
120.0 |
| C26 |
N28 |
HN28 |
109.5 |
120.0 |
| C26 |
N28 |
HN2A |
109.5 |
120.0 |
| HN28 |
N28 |
HN2A |
109.5 |
120.0 |
Torsion Angles for NX3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
S1 |
C5 |
C4 |
359.4 |
360.0 |
| C2 |
S1 |
C5 |
H5 |
179.4 |
180.1 |
| C3 |
C4 |
C5 |
S1 |
2.6 |
360.0 |
| S1 |
C5 |
C4 |
H4 |
182.6 |
180.0 |
| C4 |
C5 |
S1 |
H5 |
180.0 |
179.9 |
| C3 |
C2 |
S1 |
C5 |
358.2 |
0.0 |
| S10 |
C3 |
C4 |
H4 |
356.1 |
359.9 |
| S1 |
C5 |
C4 |
C3 |
2.6 |
360.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
H5 |
182.6 |
179.9 |
| S1 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.1 |
| H4 |
C4 |
C5 |
H5 |
2.6 |
360.0 |
| S1 |
C5 |
H5 |
C4 |
180.0 |
179.9 |
| H5 |
C5 |
C4 |
H4 |
2.6 |
360.0 |
| O8 |
C6 |
N7 |
HN7 |
189.8 |
180.0 |
| S9 |
N7 |
C6 |
HN7 |
180.0 |
180.0 |
| C6 |
N7 |
S9 |
HN7 |
180.0 |
180.0 |
| O21 |
S9 |
N7 |
HN7 |
205.5 |
131.4 |
| C22 |
S9 |
N7 |
HN7 |
82.0 |
245.0 |
| O20 |
S9 |
N7 |
HN7 |
336.0 |
358.5 |
| C12 |
C11 |
S10 |
H11 |
240.0 |
240.0 |
| C12 |
C11 |
S10 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
S10 |
H11A |
240.0 |
240.0 |
| S10 |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| S10 |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| S10 |
C11 |
H11 |
H11A |
119.8 |
120.0 |
| C12 |
C11 |
H11 |
H11A |
240.2 |
240.0 |
| S10 |
C11 |
H11A |
H11 |
240.2 |
240.1 |
| C12 |
C11 |
H11A |
H11 |
119.8 |
120.0 |
| C13 |
C12 |
C11 |
H11 |
161.8 |
330.0 |
| C13 |
C12 |
C11 |
H11A |
41.8 |
210.0 |
| C17 |
C12 |
C11 |
H11 |
342.1 |
149.8 |
| C17 |
C12 |
C11 |
H11A |
222.1 |
29.8 |
| C15 |
C14 |
C13 |
H13 |
180.1 |
180.1 |
| H14 |
C14 |
C13 |
H13 |
0.1 |
360.0 |
| CL19 |
C15 |
C14 |
H14 |
358.4 |
0.1 |
| C16 |
C15 |
C14 |
H14 |
179.7 |
180.1 |
| C15 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
| CL18 |
C16 |
C17 |
H17 |
0.5 |
359.7 |
| C23 |
C22 |
C27 |
C26 |
0.0 |
359.5 |
| C23 |
C22 |
C27 |
H27 |
180.0 |
179.7 |
| C25 |
C26 |
C27 |
C22 |
359.8 |
0.6 |
| C22 |
C27 |
C26 |
N28 |
179.2 |
180.2 |
| C26 |
C27 |
C22 |
H27 |
180.0 |
179.8 |
| C24 |
C23 |
C22 |
C27 |
0.2 |
0.3 |
| H23 |
C23 |
C22 |
C27 |
180.2 |
180.3 |
| C25 |
C24 |
C23 |
H23 |
179.8 |
180.0 |
| C26 |
C25 |
C24 |
H25 |
180.0 |
180.1 |
| C24 |
C25 |
C26 |
C27 |
0.2 |
359.7 |
| C24 |
C25 |
C26 |
N28 |
180.8 |
180.0 |
| H24 |
C24 |
C23 |
H23 |
359.8 |
0.0 |
| H24 |
C24 |
C25 |
C26 |
180.0 |
180.1 |
| H24 |
C24 |
C25 |
H25 |
0.0 |
360.0 |
| C22 |
C27 |
C26 |
C25 |
359.8 |
0.6 |
| C26 |
C25 |
C24 |
H24 |
180.0 |
180.1 |
| C24 |
C25 |
C26 |
H25 |
180.0 |
179.9 |
| C27 |
C26 |
C25 |
N28 |
179.4 |
179.7 |
| C25 |
C26 |
C27 |
H27 |
179.8 |
180.3 |
| C25 |
C26 |
N28 |
HN28 |
180.0 |
359.9 |
| C25 |
C26 |
N28 |
HN2A |
300.0 |
180.0 |
| H25 |
C25 |
C24 |
H24 |
0.0 |
360.0 |
| C24 |
C25 |
H25 |
C26 |
180.0 |
180.1 |
| H25 |
C25 |
C26 |
C27 |
180.2 |
179.8 |
| H25 |
C25 |
C26 |
N28 |
0.8 |
0.1 |
| C22 |
C27 |
C26 |
H27 |
180.0 |
180.2 |
| C27 |
C26 |
C25 |
H25 |
180.2 |
179.8 |
| C25 |
C26 |
C27 |
N28 |
180.6 |
180.3 |
| C27 |
C26 |
N28 |
HN28 |
0.6 |
180.2 |
| C27 |
C26 |
N28 |
HN2A |
120.6 |
0.3 |
| N28 |
C26 |
C25 |
H25 |
0.8 |
0.1 |
| C25 |
C26 |
N28 |
C27 |
179.4 |
179.7 |
| N28 |
C26 |
C27 |
H27 |
359.2 |
360.0 |
| HN28 |
N28 |
C26 |
HN2A |
240.0 |
179.9 |
| C22 |
C27 |
H27 |
C26 |
180.0 |
179.8 |
| H27 |
C27 |
C26 |
N28 |
359.2 |
360.0 |
| C26 |
N28 |
HN28 |
HN2A |
120.0 |
180.1 |
| C26 |
N28 |
HN2A |
HN28 |
240.0 |
179.9 |