PDB Chemical Component NVZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NVZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C3 1.412 1.340
N1 C5 1.416 1.471
N1 C17 1.372 1.347
S1 C2 1.816 1.839
S1 C6 1.821 1.839
C2 C4 1.537 1.541
C2 C7 1.518 1.530
N2 C3 1.309 1.340
N2 C4 1.473 1.472
C3 O3 1.220 1.215
C4 C5 1.535 1.534
C5 C6 1.538 1.542
C7 C8 1.494 1.529
C8 C9 1.571 1.530
C9 C10 1.533 1.530
C10 C11 1.517 1.506
C11 O11 1.237 1.209
C11 O12 1.247 1.342
C17 C18 1.472 1.507
C17 O19 1.308 1.213
C2 H2 1.100 1.090
N2 HN2 1.000 0.969
C4 H4 1.100 1.090
C5 H5 1.100 1.090
C6 H6 1.100 1.091
C6 H6A 1.100 1.089
C7 H7 1.100 1.090
C7 H7A 1.100 1.090
C8 H8 1.100 1.091
C8 H8A 1.100 1.090
C9 H9 1.100 1.089
C9 H9A 1.100 1.090
C10 H10 1.100 1.091
C10 H10A 1.100 1.090
O12 HO12 0.950 0.967
C18 H18 1.100 1.091
C18 H18A 1.100 1.090
C18 H18B 1.100 1.090

Bond Angles for NVZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 N1 C5 115.3 109.0
C3 N1 C17 125.6 125.5
N1 C3 N2 106.5 113.9
N1 C3 O3 131.7 123.1
C5 N1 C17 114.0 125.5
N1 C5 C4 99.0 104.1
N1 C5 C6 112.3 109.2
N1 C5 H5 115.2 110.3
N1 C17 C18 111.7 120.0
N1 C17 O19 128.1 120.0
C2 S1 C6 90.7 94.8
S1 C2 C4 102.9 102.7
S1 C2 C7 112.4 110.8
S1 C2 H2 113.3 110.7
S1 C6 C5 105.0 102.7
S1 C6 H6 111.0 110.7
S1 C6 H6A 111.0 110.8
C4 C2 C7 113.3 110.8
C2 C4 N2 116.0 109.2
C2 C4 C5 106.7 112.4
C4 C2 H2 112.4 110.7
C2 C4 H4 105.9 110.3
C2 C7 C8 116.2 109.5
C7 C2 H2 102.9 110.9
C2 C7 H7 107.3 109.4
C2 C7 H7A 107.3 109.5
C3 N2 C4 111.2 109.0
N2 C3 O3 121.7 123.1
C3 N2 HN2 124.4 125.5
N2 C4 C5 106.0 104.0
C4 N2 HN2 124.4 125.5
N2 C4 H4 106.6 110.2
C4 C5 C6 111.7 112.3
C5 C4 H4 116.0 110.5
C4 C5 H5 115.8 110.3
C6 C5 H5 103.3 110.5
C5 C6 H6 111.0 110.7
C5 C6 H6A 111.0 110.8
C7 C8 C9 109.7 109.5
C8 C7 H7 107.3 109.5
C8 C7 H7A 107.3 109.5
C7 C8 H8 109.4 109.4
C7 C8 H8A 109.4 109.5
C8 C9 C10 108.9 109.5
C9 C8 H8 109.4 109.5
C9 C8 H8A 109.4 109.5
C8 C9 H9 109.6 109.5
C8 C9 H9A 109.6 109.5
C9 C10 C11 111.8 109.5
C10 C9 H9 109.7 109.5
C10 C9 H9A 109.6 109.5
C9 C10 H10 108.7 109.4
C9 C10 H10A 108.7 109.5
C10 C11 O11 121.0 120.0
C10 C11 O12 118.8 120.0
C11 C10 H10 108.7 109.5
C11 C10 H10A 108.7 109.5
O11 C11 O12 120.2 120.0
C11 O12 HO12 109.5 117.0
C18 C17 O19 119.4 120.0
C17 C18 H18 109.5 109.5
C17 C18 H18A 109.5 109.5
C17 C18 H18B 109.4 109.5
H6 C6 H6A 107.9 110.8
H7 C7 H7A 111.5 109.5
H8 C8 H8A 109.5 109.4
H9 C9 H9A 109.3 109.5
H10 C10 H10A 110.2 109.4
H18 C18 H18A 109.4 109.4
H18 C18 H18B 109.5 109.5
H18A C18 H18B 109.5 109.5

Torsion Angles for NVZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 N1 C3 C17 207.0 180.2
C3 N1 C5 C4 14.5 0.0
C3 N1 C5 C6 256.4 239.9
C3 N1 C5 H5 138.5 118.3
C3 N1 C17 C18 356.5 175.8
C3 N1 C17 O19 187.1 355.8
N1 C3 N2 C4 1.6 0.1
N2 C3 N1 O3 176.8 180.0
N1 C3 N2 HN2 181.6 180.0
C3 N1 C5 C17 156.2 179.8
C5 N1 C3 N2 348.9 360.0
C5 N1 C3 O3 172.0 180.0
C5 N1 C17 C18 149.8 355.5
C5 N1 C17 O19 340.4 175.5
S1 C6 C5 N1 95.7 90.3
C2 C4 C5 N1 223.6 242.0
N2 C4 C5 N1 347.8 0.0
C4 C5 N1 C6 118.0 120.2
N1 C5 C4 H4 105.9 118.3
C4 C5 N1 H5 235.9 241.7
C6 C5 N1 H5 117.9 121.6
N1 C5 C6 H6 335.6 332.0
N1 C5 C6 H6A 215.7 208.6
C3 N1 C17 C5 206.6 180.3
C17 N1 C3 N2 141.9 179.7
C17 N1 C3 O3 325.1 359.7
C17 N1 C5 C4 218.3 180.2
C17 N1 C5 C6 100.2 60.1
C17 N1 C5 H5 342.3 298.5
C18 C17 N1 O19 169.4 180.0
N1 C17 C18 H18 189.6 5.4
N1 C17 C18 H18A 309.5 125.3
N1 C17 C18 H18B 69.6 245.4
C2 S1 C6 C5 34.5 34.7
C2 S1 C6 H6 154.6 153.0
C2 S1 C6 H6A 274.5 276.3
C4 C2 S1 C7 122.2 118.4
S1 C2 C4 N2 284.4 269.7
S1 C2 C4 C5 42.2 24.6
C4 C2 S1 H2 238.4 241.8
S1 C2 C4 H4 166.3 148.4
S1 C2 C7 C8 281.0 293.6
C7 C2 S1 H2 116.1 123.4
S1 C2 C7 H7 41.1 53.6
S1 C2 C7 H7A 161.0 173.5
N1 C5 C6 S1 95.7 90.3
C6 S1 C2 C4 314.9 325.3
C6 S1 C2 C7 192.6 207.0
C6 S1 C2 H2 76.5 83.6
C4 C5 C6 S1 345.5 335.3
S1 C6 C5 H5 220.4 211.8
C5 C6 S1 H6 240.0 241.7
C5 C6 S1 H6A 120.0 118.4
H6 C6 S1 H6A 240.0 236.6
N1 C5 C4 C2 223.6 242.0
C4 C2 S1 C6 314.9 325.3
S1 C2 C4 C7 238.3 241.7
S1 C2 C4 H2 122.2 118.2
C4 C2 C7 C8 164.9 180.3
C7 C2 C4 H2 243.9 236.6
C4 C2 C7 H7 284.9 300.3
C4 C2 C7 H7A 44.9 60.2
C3 N2 C4 C2 125.3 120.2
N2 C4 C2 C5 242.2 245.1
C2 C4 N2 HN2 305.3 300.2
N2 C4 C2 H4 118.1 121.3
C2 C4 C5 C6 342.0 0.1
C5 C4 C2 H4 235.9 236.2
C2 C4 C5 H5 99.9 123.7
C7 C2 S1 C6 192.6 207.0
S1 C2 C7 C4 116.2 113.3
S1 C2 C7 H2 237.8 236.7
C7 C2 C4 N2 46.0 28.0
C7 C2 C4 C5 163.9 142.9
C4 C2 C7 H2 121.6 123.3
C7 C2 C4 H4 288.0 266.8
C2 C7 C8 C9 187.0 180.0
C8 C7 C2 H7 240.0 240.0
C8 C7 C2 H7A 120.0 120.0
C2 C7 C8 H8 307.0 300.0
C2 C7 C8 H8A 67.0 60.0
H7 C7 C2 H7A 240.0 240.0
N2 C3 N1 C5 348.9 360.0
N2 C3 N1 C17 141.9 179.7
N1 C3 N2 O3 182.8 180.0
C2 C4 N2 C3 125.3 120.2
C3 N2 C4 C5 7.1 360.0
C4 N2 C3 HN2 180.0 180.0
C3 N2 C4 H4 243.0 241.5
N1 C5 C4 N2 347.8 0.0
N2 C4 C2 C7 46.0 28.0
C2 C4 N2 C5 118.2 120.2
N2 C4 C2 H2 162.2 151.4
C2 C4 N2 H4 242.3 238.7
C4 N2 C3 O3 178.8 180.0
C3 N2 C4 HN2 180.0 180.0
N2 C4 C5 C6 106.3 118.1
C5 C4 N2 H4 124.1 118.5
N2 C4 C5 H5 224.1 241.7
O3 C3 N1 C5 172.0 180.0
O3 C3 N1 C17 325.1 359.7
N1 C3 O3 N2 176.4 180.0
O3 C3 N2 C4 178.8 180.0
O3 C3 N2 HN2 358.9 0.0
C4 C5 N1 C17 218.3 180.2
N1 C5 C4 C6 241.5 242.0
N1 C5 C4 H5 123.7 118.3
S1 C6 C5 C4 345.5 335.3
C5 C4 C2 C7 163.9 142.9
C2 C4 C5 N2 235.8 242.0
C5 C4 C2 H2 280.0 266.3
C2 C4 C5 H4 117.7 123.7
C5 C4 N2 HN2 187.1 180.0
N2 C4 C5 H4 241.9 241.7
C6 C5 C4 H5 242.2 236.3
C4 C5 C6 H6 225.5 217.1
C4 C5 C6 H6A 105.5 93.7
C6 C5 N1 C17 100.2 60.1
N1 C5 C6 C4 110.2 114.9
N1 C5 C6 H5 235.2 238.5
S1 C6 C5 H6 120.0 118.3
S1 C6 C5 H6A 240.0 241.6
C6 C5 C4 H4 224.4 236.3
C4 C5 C6 H5 125.1 123.6
H6 C6 C5 H6A 120.0 123.4
C8 C7 C2 H2 43.2 56.9
C2 C7 C8 H7 120.0 120.0
C2 C7 C8 H7A 240.0 240.0
C7 C8 C9 C10 178.7 180.0
C9 C8 C7 H8 240.0 240.0
C9 C8 C7 H8A 120.0 120.0
C7 C8 C9 H9 298.6 300.0
C7 C8 C9 H9A 58.7 60.0
H7 C7 C8 H7A 120.0 120.0
H8 C8 C7 H8A 240.0 240.1
C9 C8 C7 H7 67.0 60.0
C9 C8 C7 H7A 307.0 300.0
C7 C8 C9 H8 120.0 120.0
C7 C8 C9 H8A 240.0 239.9
C8 C9 C10 C11 289.6 180.0
C10 C9 C8 H9 240.0 240.0
C10 C9 C8 H9A 120.0 120.0
C8 C9 C10 H10 49.7 300.0
C8 C9 C10 H10A 169.6 59.9
H8 C8 C9 H8A 120.0 119.9
H9 C9 C8 H9A 240.0 240.0
C10 C9 C8 H8 58.6 60.0
C10 C9 C8 H8A 298.7 300.1
C8 C9 C10 H9 120.0 120.0
C8 C9 C10 H9A 240.0 240.0
C9 C10 C11 O11 144.4 0.0
C9 C10 C11 O12 324.8 180.0
C11 C10 C9 H10 240.0 240.0
C11 C10 C9 H10A 120.0 120.1
H9 C9 C10 H9A 120.0 120.0
H10 C10 C9 H10A 240.0 240.1
C11 C10 C9 H9 169.6 60.0
C11 C10 C9 H9A 49.6 300.0
C9 C10 C11 H10 120.0 120.0
C9 C10 C11 H10A 240.0 240.0
O11 C11 C10 O12 179.6 180.0
C10 C11 O12 HO12 179.6 180.0
H10 C10 C11 H10A 120.0 120.0
C10 C11 O11 O12 180.4 180.0
O11 C11 C10 H10 24.4 240.0
O11 C11 C10 H10A 264.4 120.1
O11 C11 O12 HO12 0.0 360.0
C10 C11 O12 O11 179.6 180.0
O12 C11 C10 H10 204.8 60.0
O12 C11 C10 H10A 84.8 300.0
N1 C17 C18 O19 189.6 180.0
H18 C18 C17 H18A 240.0 240.1
H18 C18 C17 H18B 120.0 120.0
H18A C18 C17 H18B 240.0 239.9
N1 C17 O19 C18 168.7 180.0
O19 C17 C18 H18 0.0 185.4
O19 C17 C18 H18A 120.0 305.3
O19 C17 C18 H18B 240.0 65.4
H2 C2 S1 C6 76.5 83.6
S1 C2 H2 C4 243.9 246.8
S1 C2 H2 C7 121.6 123.4
C4 C2 H2 C7 237.8 236.6
H2 C2 C4 N2 162.2 151.4
H2 C2 C4 C5 280.0 266.3
H2 C2 C4 H4 44.1 30.2
H2 C2 C7 C8 43.2 56.9
H2 C2 C7 H7 163.3 176.9
H2 C2 C7 H7A 283.2 296.9
C3 N2 HN2 C4 180.0 180.0
HN2 N2 C3 O3 358.9 0.0
HN2 N2 C4 C5 187.1 180.0
HN2 N2 C4 H4 63.0 61.5
H4 C4 C2 C7 288.0 266.8
C2 C4 H4 N2 124.1 120.6
C2 C4 H4 C5 241.9 235.1
H4 C4 C2 H2 44.1 30.2
N2 C4 H4 C5 117.7 114.4
H4 C4 N2 HN2 63.0 61.5
H4 C4 C5 C6 224.4 236.3
H4 C4 C5 H5 342.2 0.0
H5 C5 N1 C17 342.3 298.5
N1 C5 H5 C4 245.3 245.6
N1 C5 H5 C6 122.9 120.9
C4 C5 H5 C6 237.6 235.2
H5 C5 C4 H4 342.2 0.0
H5 C5 C6 H6 100.4 93.5
H5 C5 C6 H6A 340.4 330.1
S1 C6 H6 C5 243.6 246.7
S1 C6 H6 H6A 121.8 123.4
H6 C6 C5 H5 100.4 93.5
C5 C6 H6 H6A 238.2 236.7
S1 C6 H6A C5 116.4 113.3
S1 C6 H6A H6 238.2 236.7
H6A C6 C5 H5 340.4 330.1
C5 C6 H6A H6 121.8 123.3
C2 C7 H7 C8 234.5 240.0
H7 C7 C2 H2 163.3 176.9
C2 C7 H7 H7A 117.2 119.9
H7 C7 C8 C9 67.0 60.0
C8 C7 H7 H7A 242.7 239.9
H7 C7 C8 H8 187.0 180.0
H7 C7 C8 H8A 307.0 300.0
C2 C7 H7A C8 125.5 120.0
H7A C7 C2 H2 283.2 296.9
C2 C7 H7A H7 242.8 240.1
H7A C7 C8 C9 307.0 300.0
C8 C7 H7A H7 117.3 120.0
H7A C7 C8 H8 67.0 60.0
H7A C7 C8 H8A 187.0 180.0
C7 C8 H8 C9 239.8 240.0
H8 C8 C7 H7 187.0 180.0
H8 C8 C7 H7A 67.0 60.0
C7 C8 H8 H8A 119.9 120.0
H8 C8 C9 C10 58.6 60.0
C9 C8 H8 H8A 240.1 240.0
H8 C8 C9 H9 178.6 180.0
H8 C8 C9 H9A 298.7 300.0
C7 C8 H8A C9 120.2 120.0
H8A C8 C7 H7 307.0 300.0
H8A C8 C7 H7A 187.0 180.0
C7 C8 H8A H8 240.1 240.0
H8A C8 C9 C10 298.7 300.1
C9 C8 H8A H8 119.9 120.0
H8A C8 C9 H9 58.7 60.1
H8A C8 C9 H9A 178.7 180.0
C8 C9 H9 C10 240.4 240.0
H9 C9 C8 H8 178.6 180.0
H9 C9 C8 H8A 58.7 60.1
C8 C9 H9 H9A 120.2 120.0
H9 C9 C10 C11 169.6 60.0
C10 C9 H9 H9A 239.8 240.0
H9 C9 C10 H10 289.7 180.0
H9 C9 C10 H10A 49.7 299.9
C8 C9 H9A C10 119.5 120.0
H9A C9 C8 H8 298.7 300.0
H9A C9 C8 H8A 178.7 180.0
C8 C9 H9A H9 239.8 240.0
H9A C9 C10 C11 49.6 300.0
C10 C9 H9A H9 120.2 120.0
H9A C9 C10 H10 169.6 60.0
H9A C9 C10 H10A 289.6 179.9
C9 C10 H10 C11 238.1 240.0
H10 C10 C9 H9 289.7 180.0
H10 C10 C9 H9A 169.6 60.0
C9 C10 H10 H10A 119.0 119.9
H10 C10 C11 O11 24.4 240.0
H10 C10 C11 O12 204.8 60.0
C11 C10 H10 H10A 240.9 240.0
C9 C10 H10A C11 121.9 120.1
H10A C10 C9 H9 49.7 299.9
H10A C10 C9 H9A 289.6 179.9
C9 C10 H10A H10 241.0 240.1
H10A C10 C11 O11 264.4 120.1
H10A C10 C11 O12 84.8 300.0
C11 C10 H10A H10 119.1 120.0
H18 C18 C17 O19 0.0 185.4
C17 C18 H18 H18A 120.0 120.0
C17 C18 H18 H18B 240.0 240.0
H18A C18 H18 H18B 120.0 120.0
H18A C18 C17 O19 120.0 305.3
C17 C18 H18A H18 240.0 240.0
C17 C18 H18A H18B 120.0 120.1
H18 C18 H18A H18B 240.0 240.0
H18B C18 C17 O19 240.0 65.4
C17 C18 H18B H18 120.0 120.0
C17 C18 H18B H18A 240.0 239.9
H18 C18 H18B H18A 120.0 119.9