PDB Chemical Component NVE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NVE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C20 C21 1.558 1.529
C21 O22 1.495 1.429
C28 C27 1.419 1.381
C28 C29 1.476 1.384
C27 C26 1.444 1.388
C35 O34 1.508 1.429
C35 C36 1.545 1.530
C33 C32 1.560 1.530
C33 C12 1.604 1.507
C13 N14 1.358 1.319
C13 C12 1.411 1.383
O22 P23 1.661 1.611
O34 P23 1.636 1.610
N14 C15 1.409 1.321
O25 C26 1.380 1.358
O25 C24 1.420 1.430
C29 C32 1.544 1.507
C29 C30 1.459 1.382
C26 C31 1.489 1.387
C12 C11 1.464 1.384
C1 C2 1.545 1.530
P23 C24 1.800 1.823
P23 O37 1.504 1.480
C30 C31 1.446 1.382
C15 N3 1.438 1.385
C15 C10 1.455 1.407
C2 N3 1.498 1.465
C11 C10 1.427 1.399
N3 C4 1.434 1.393
C10 C8 1.468 1.466
N19 C4 1.397 1.327
N19 C18 1.393 1.319
C4 C5 1.458 1.392
C18 C17 1.437 1.380
C8 O9 1.248 1.215
C8 N6 1.378 1.325
C5 N6 1.435 1.393
C5 C16 1.454 1.391
N6 C7 1.514 1.465
C17 C16 1.419 1.388
C1 H1 1.100 1.090
C1 H2 1.100 1.090
C1 H3 1.100 1.090
C2 H4 1.100 1.090
C2 H5 1.100 1.090
C7 H6 1.100 1.091
C7 H7 1.100 1.090
C7 H8 1.100 1.089
C11 H9 1.080 1.081
C13 H10 1.080 1.081
C16 H11 1.080 1.080
C17 H12 1.080 1.080
C18 H13 1.080 1.080
C20 H14 1.099 1.090
C20 H15 1.100 1.091
C20 H16 1.100 1.089
C21 H17 1.100 1.090
C21 H18 1.101 1.089
C24 H19 1.100 1.090
C24 H20 1.100 1.090
C27 H21 1.080 1.081
C28 H22 1.080 1.080
C30 H23 1.080 1.080
C31 H24 1.080 1.080
C32 H25 1.100 1.090
C32 H26 1.100 1.090
C33 H27 1.100 1.090
C33 H28 1.099 1.090
C35 H29 1.100 1.090
C35 H30 1.100 1.090
C36 H31 1.101 1.090
C36 H32 1.100 1.090
C36 H33 1.100 1.090

Bond Angles for NVE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C20 C21 O22 112.2 109.4
C21 C20 H14 109.5 109.5
C21 C20 H15 109.5 109.4
C21 C20 H16 109.5 109.5
C20 C21 H17 108.8 109.5
C20 C21 H18 108.8 109.5
C21 O22 P23 115.7 123.0
O22 C21 H17 108.8 109.4
O22 C21 H18 108.8 109.4
C28 C27 H21 119.6 120.0
C28 C29 C32 121.7 119.9
C28 C29 C30 120.1 120.1
C29 C28 H22 119.9 119.9
C27 C26 C31 120.2 119.9
C36 C35 H29 108.0 109.5
C36 C35 H30 108.0 109.5
C35 C36 H31 109.5 109.5
C35 C36 H32 109.5 109.5
C35 C36 H33 109.5 109.5
C33 C32 H25 107.9 109.5
C33 C32 H26 107.9 109.4
C13 N14 C15 124.8 121.9
N14 C13 H10 120.6 119.4
O22 P23 C24 105.1 109.5
O22 P23 O37 112.9 109.4
O34 P23 O37 111.2 109.5
O25 C26 C31 124.5 120.1
O25 C24 H19 109.9 109.4
O25 C24 H20 109.9 109.4
C30 C29 C32 118.2 120.0
C29 C32 H25 107.9 109.4
C29 C32 H26 107.9 109.5
C29 C30 C31 119.8 120.1
C29 C30 H23 120.0 120.0
C26 C31 C30 119.1 120.0
C26 C31 H24 120.5 120.0
C12 C11 H9 119.6 120.8
C1 C2 N3 118.7 109.5
C2 C1 H1 109.5 109.5
C2 C1 H2 109.4 109.4
C2 C1 H3 109.5 109.5
C1 C2 H4 107.2 109.5
C1 C2 H5 107.1 109.5
C24 P23 O37 105.3 109.5
P23 C24 H19 109.9 109.5
P23 C24 H20 109.9 109.5
C31 C30 H23 120.1 120.0
C30 C31 H24 120.5 120.0
C2 N3 C4 120.2 120.5
N3 C2 H4 107.1 109.4
N3 C2 H5 107.1 109.5
N3 C4 C5 123.5 121.0
N19 C18 H13 120.1 119.6
C4 C5 N6 122.9 121.7
C4 C5 C16 117.4 119.0
C18 C17 H12 120.8 120.4
N6 C5 C16 119.8 119.3
C5 N6 C7 115.7 116.6
C5 C16 H11 119.0 120.7
N6 C7 H6 109.5 109.4
N6 C7 H7 109.5 109.5
N6 C7 H8 109.5 109.5
C17 C16 H11 119.1 120.7
H1 C1 H2 109.5 109.5
H1 C1 H3 109.5 109.5
H2 C1 H3 109.5 109.5
H4 C2 H5 109.5 109.4
H6 C7 H7 109.5 109.4
H6 C7 H8 109.4 109.5
H7 C7 H8 109.5 109.5
H14 C20 H15 109.5 109.4
H14 C20 H16 109.4 109.5
H15 C20 H16 109.5 109.5
H17 C21 H18 109.4 109.5
H19 C24 H20 109.5 109.5
H25 C32 H26 109.5 109.5
H27 C33 H28 109.5 109.4
H29 C35 H30 109.5 109.5
H31 C36 H32 109.5 109.5
H31 C36 H33 109.5 109.5
H32 C36 H33 109.4 109.5

Torsion Angles for NVE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C20 C21 O22 P23 131.8 180.0
O22 C21 C20 H17 239.6 240.0
O22 C21 C20 H18 120.4 120.0
H14 C20 C21 H15 240.0 240.0
H14 C20 C21 H16 120.0 120.1
H15 C20 C21 H16 240.0 240.0
H17 C21 C20 H18 240.8 239.9
O22 C21 C20 H14 180.0 300.0
O22 C21 C20 H15 300.0 60.0
O22 C21 C20 H16 60.0 180.0
C20 C21 O22 H17 120.4 120.0
C20 C21 O22 H18 239.6 240.0
C21 O22 P23 C24 53.8 175.0
C21 O22 P23 O37 168.1 55.0
H17 C21 O22 H18 119.2 120.0
C28 C27 C26 C31 0.0 0.3
C29 C28 C27 H21 179.9 180.0
C30 C29 C28 C32 180.1 180.0
C28 C29 C32 H25 194.4 210.0
C28 C29 C32 H26 76.2 330.0
C28 C29 C30 C31 360.0 359.8
C28 C29 C30 H23 180.0 179.9
O25 C26 C27 C31 179.6 179.7
C27 C26 C31 C30 0.0 359.5
C27 C26 C31 H24 180.0 179.7
C35 O34 P23 O37 74.6 305.0
H29 C35 C36 H30 118.4 120.0
H31 C36 C35 H32 240.0 240.0
H31 C36 C35 H33 120.0 120.0
H32 C36 C35 H33 240.0 240.0
C29 C32 C33 H25 239.1 120.0
C29 C32 C33 H26 120.9 240.0
H25 C32 C33 H26 241.8 120.0
C33 C12 C11 H9 0.9 0.3
C13 C12 C11 H9 180.3 180.3
P23 O22 C21 H17 11.3 60.0
P23 O22 C21 H18 252.2 300.0
O34 P23 O22 O37 124.7 240.0
C24 P23 O22 O37 245.7 120.0
O22 P23 C24 H19 145.3 60.0
O22 P23 C24 H20 24.8 180.0
O22 P23 O34 O37 234.3 120.0
C24 P23 O34 O37 117.7 240.0
O34 P23 C24 H19 264.7 299.9
O34 P23 C24 H20 144.2 60.0
C15 N14 C13 H10 180.1 180.2
C27 C26 O25 C31 180.4 180.3
C26 O25 C24 H19 297.3 315.0
C26 O25 C24 H20 57.8 195.0
O25 C26 C31 C30 180.5 179.8
O25 C26 C31 H24 0.4 0.0
O25 C24 P23 O37 145.6 60.0
P23 C24 O25 H19 240.3 120.0
P23 C24 O25 H20 119.7 240.0
H19 C24 O25 H20 239.5 120.0
C28 C29 C32 C30 180.1 180.0
C32 C29 C28 H22 360.0 360.0
C33 C32 C29 H25 120.9 240.0
C33 C32 C29 H26 239.1 119.9
C32 C29 C30 C31 180.1 179.8
C32 C29 C30 H23 0.1 359.9
H25 C32 C29 H26 118.2 240.0
C28 C29 C30 C32 179.9 180.0
C30 C29 C28 H22 180.1 180.0
C30 C29 C32 H25 14.2 30.0
C30 C29 C32 H26 256.0 150.0
C26 C31 C30 C29 360.0 0.5
C31 C30 C29 H23 180.0 179.8
C29 C30 C31 H24 180.0 180.2
C29 C30 C31 C26 360.0 0.5
C26 C31 C30 H23 180.0 180.3
C30 C31 C26 H24 180.0 179.7
C1 C2 N3 C4 172.9 90.0
N3 C2 C1 H4 238.7 240.0
N3 C2 C1 H5 121.3 120.0
H1 C1 C2 H2 240.0 240.0
H1 C1 C2 H3 120.0 120.0
H2 C1 C2 H3 240.0 240.0
H4 C2 C1 H5 242.6 240.0
O22 P23 C24 O37 119.5 240.0
O34 P23 C24 O37 238.8 120.0
O25 C24 P23 H19 119.7 240.1
O25 C24 P23 H20 240.3 120.0
H19 C24 P23 H20 120.5 239.9
O22 P23 O37 C24 245.9 120.0
O37 P23 C24 H19 25.9 179.9
O37 P23 C24 H20 265.3 300.0
C31 C30 C29 C32 180.1 179.8
C29 C30 C31 H23 180.0 180.2
C26 C31 C30 H24 180.0 180.3
C15 N3 C2 H4 226.3 149.7
C15 N3 C2 H5 109.0 29.8
N3 C2 C1 H1 180.0 300.0
N3 C2 C1 H2 300.0 60.0
N3 C2 C1 H3 60.0 180.0
C1 C2 N3 H4 121.3 120.0
C1 C2 N3 H5 238.7 239.9
C2 N3 C4 C5 233.9 241.6
H4 C2 N3 H5 117.4 119.9
C4 N3 C2 H4 51.6 330.0
C4 N3 C2 H5 294.2 210.0
N3 C4 C5 N6 0.9 4.4
N3 C4 C5 C16 181.1 183.1
N19 C18 C17 H12 180.5 181.0
N6 C5 C4 C16 179.8 181.3
C4 C5 N6 C7 145.0 139.9
C4 C5 C16 H11 179.7 178.2
C18 C17 C16 H11 179.8 180.1
C8 N6 C5 C16 144.7 141.3
C8 N6 C7 H6 180.0 270.0
C8 N6 C7 H7 300.0 29.9
C8 N6 C7 H8 60.0 150.0
C4 C5 N6 C16 180.2 178.7
N6 C5 C16 H11 359.9 356.9
C5 N6 C7 H6 359.9 90.1
C5 N6 C7 H7 119.9 210.0
C5 N6 C7 H8 239.9 330.0
C4 C5 C16 N6 179.8 181.3
C16 C5 N6 C7 324.8 321.2
C17 C16 C5 H11 180.0 180.0
C7 N6 C5 C16 324.8 321.2
H6 C7 N6 H7 240.0 240.1
H6 C7 N6 H8 120.0 120.0
H7 C7 N6 H8 240.0 239.9
C5 C16 C17 H11 180.0 180.0
H1 C1 C2 N3 180.0 300.0
C2 C1 H1 H2 120.0 119.9
C2 C1 H1 H3 240.0 240.0
H1 C1 C2 H4 301.3 60.0
H1 C1 C2 H5 58.7 180.0
H2 C1 H1 H3 120.0 120.1
H2 C1 C2 N3 300.0 60.0
C2 C1 H2 H1 240.0 240.0
C2 C1 H2 H3 120.0 120.0
H2 C1 C2 H4 61.3 180.0
H2 C1 C2 H5 178.7 299.9
H1 C1 H2 H3 240.0 239.9
H3 C1 C2 N3 60.0 180.0
C2 C1 H3 H1 120.0 120.0
C2 C1 H3 H2 240.0 240.0
H3 C1 C2 H4 181.3 300.0
H3 C1 C2 H5 298.7 60.0
H1 C1 H3 H2 120.0 120.0
C1 C2 H4 N3 231.7 240.0
H4 C2 C1 H1 301.3 60.0
H4 C2 C1 H2 61.3 180.0
H4 C2 C1 H3 181.3 300.0
C1 C2 H4 H5 115.9 120.0
H4 C2 N3 C4 51.6 330.0
N3 C2 H4 H5 244.2 240.0
C1 C2 H5 N3 128.3 120.0
H5 C2 C1 H1 58.7 180.0
H5 C2 C1 H2 178.7 299.9
H5 C2 C1 H3 298.7 60.0
C1 C2 H5 H4 244.1 240.0
H5 C2 N3 C4 294.2 210.0
N3 C2 H5 H4 115.8 119.9
N6 C7 H6 H7 120.0 119.9
N6 C7 H6 H8 240.0 240.0
H7 C7 H6 H8 120.0 120.0
N6 C7 H7 H6 240.0 240.1
N6 C7 H7 H8 120.0 120.0
H6 C7 H7 H8 240.0 240.0
N6 C7 H8 H6 120.0 120.0
N6 C7 H8 H7 240.0 240.0
H6 C7 H8 H7 120.0 120.0
H10 C13 N14 C15 180.1 180.2
H12 C17 C16 H11 359.8 360.0
H13 C18 C17 H12 0.5 1.1
H14 C20 C21 O22 180.0 300.0
C21 C20 H14 H15 120.0 120.0
C21 C20 H14 H16 240.0 240.0
H14 C20 C21 H17 300.4 60.0
H14 C20 C21 H18 59.6 180.1
H15 C20 H14 H16 120.0 120.0
H15 C20 C21 O22 300.0 60.0
C21 C20 H15 H14 240.0 240.0
C21 C20 H15 H16 120.0 120.0
H15 C20 C21 H17 60.4 180.0
H15 C20 C21 H18 179.6 300.1
H14 C20 H15 H16 240.0 240.0
H16 C20 C21 O22 60.0 180.0
C21 C20 H16 H14 120.0 120.1
C21 C20 H16 H15 240.0 240.1
H16 C20 C21 H17 180.4 299.9
H16 C20 C21 H18 299.6 60.0
H14 C20 H16 H15 120.0 120.0
C20 C21 H17 O22 237.5 240.1
H17 C21 C20 H14 300.4 60.0
H17 C21 C20 H15 60.4 180.0
H17 C21 C20 H16 180.4 299.9
C20 C21 H17 H18 118.7 120.1
H17 C21 O22 P23 11.3 60.0
O22 C21 H17 H18 241.3 240.0
C20 C21 H18 O22 122.5 120.0
H18 C21 C20 H14 59.6 180.1
H18 C21 C20 H15 179.6 300.1
H18 C21 C20 H16 299.6 60.0
C20 C21 H18 H17 241.2 239.9
H18 C21 O22 P23 252.2 300.0
O22 C21 H18 H17 118.7 120.0
O25 C24 H19 H20 120.8 240.0
H19 C24 P23 O37 25.9 179.9
P23 C24 H19 H20 239.2 120.1
O25 C24 H20 H19 239.2 120.0
H20 C24 P23 O37 265.3 300.0
P23 C24 H20 H19 120.8 240.0
H21 C27 C26 C31 180.0 180.2
H22 C28 C27 H21 359.9 0.1
H22 C28 C29 C32 360.0 360.0
H22 C28 C29 C30 180.1 180.0
H23 C30 C29 C32 0.1 359.9
C29 C30 H23 C31 180.0 179.8
H23 C30 C31 H24 0.0 0.0
C26 C31 H24 C30 180.0 179.7
H24 C31 C30 H23 0.0 0.0
C33 C32 H25 H26 117.1 240.0
C29 C32 H25 H26 242.8 120.0
C33 C32 H26 H25 242.9 120.0
C29 C32 H26 H25 117.2 240.0
H27 C33 C32 H25 167.3 300.0
H27 C33 C32 H26 285.4 180.0
H28 C33 C32 H25 287.3 180.0
H28 C33 C32 H26 45.5 60.0
C36 C35 H29 H30 242.6 240.0
H29 C35 C36 H31 59.2 180.0
H29 C35 C36 H32 179.2 300.0
H29 C35 C36 H33 299.2 60.0
C36 C35 H30 H29 117.4 120.0
H30 C35 C36 H31 300.8 60.0
H30 C35 C36 H32 60.8 180.0
H30 C35 C36 H33 180.8 300.0
H31 C36 C35 H29 59.2 180.0
H31 C36 C35 H30 300.8 60.0
C35 C36 H31 H32 120.0 120.0
C35 C36 H31 H33 240.0 240.0
H32 C36 H31 H33 120.0 120.0
H32 C36 C35 H29 179.2 300.0
H32 C36 C35 H30 60.8 180.0
C35 C36 H32 H31 240.0 239.9
C35 C36 H32 H33 120.0 120.0
H31 C36 H32 H33 240.0 240.0
H33 C36 C35 H29 299.2 60.0
H33 C36 C35 H30 180.8 300.0
C35 C36 H33 H31 120.0 120.0
C35 C36 H33 H32 240.0 240.0
H31 C36 H33 H32 120.0 120.0