PDB Chemical Component NVC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NVC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O28	C27	1.219	1.214
C27	C29	1.521	1.507
C27	N17	1.339	1.347
C29	C40	1.532	1.530
C29	C31	1.534	1.530
C40	C43	1.536	1.529
C43	C46	1.525	1.530
C46	C49	1.514	1.530
C31	N34	1.459	1.465
N34	O35	1.399	1.416
N34	C37	1.250	1.348
C37	O39	1.164	1.213
N17	C15	1.467	1.471
N17	C18	1.472	1.473
C15	C24	1.522	1.543
C15	C3	1.474	1.507
C24	C21	1.523	1.552
C21	C18	1.529	1.552
C3	O1	1.360	1.343
C3	N4	1.357	1.299
O1	C6	1.401	1.351
C6	C5	1.382	1.402
C6	C7	1.387	1.387
C5	N4	1.368	1.360
C5	C13	1.390	1.397
C7	C9	1.393	1.379
C9	C11	1.395	1.388
C11	C13	1.393	1.376
C29	H29	1.100	1.090
C40	H40	1.100	1.089
C40	H40A	1.100	1.090
C43	H43	1.100	1.091
C43	H43A	1.100	1.091
C46	H46	1.100	1.091
C46	H46A	1.100	1.090
C49	H49	1.100	1.090
C49	H49A	1.100	1.091
C49	H49B	1.100	1.090
C31	H31	1.100	1.090
C31	H31A	1.100	1.091
O35	HO35	0.950	0.967
C37	H37	1.080	1.079
C15	H15	1.100	1.090
C24	H24	1.100	1.090
C24	H24A	1.100	1.090
C21	H21	1.100	1.089
C21	H21A	1.100	1.090
C18	H18	1.100	1.091
C18	H18A	1.100	1.090
C7	H7	1.080	1.080
C9	H9	1.080	1.080
C11	H11	1.080	1.079
C13	H13	1.080	1.080

Bond Angles for NVC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O28	C27	C29	120.0	120.0
O28	C27	N17	121.0	120.0
C29	C27	N17	118.9	120.0
C27	C29	C40	113.9	109.5
C27	C29	C31	105.6	109.5
C27	C29	H29	109.4	109.4
C27	N17	C15	119.8	125.6
C27	N17	C18	128.9	125.7
C40	C29	C31	110.1	109.5
C29	C40	C43	112.6	109.5
C40	C29	H29	104.9	109.5
C29	C40	H40	108.5	109.5
C29	C40	H40A	107.7	109.4
C29	C31	N34	111.6	109.5
C31	C29	H29	113.3	109.5
C29	C31	H31	108.7	109.5
C29	C31	H31A	108.3	109.4
C40	C43	C46	108.3	109.5
C43	C40	H40	108.4	109.5
C43	C40	H40A	107.8	109.4
C40	C43	H43	109.8	109.5
C40	C43	H43A	110.2	109.5
C43	C46	C49	112.6	109.5
C46	C43	H43	109.9	109.4
C46	C43	H43A	110.1	109.4
C43	C46	H46	108.5	109.5
C43	C46	H46A	107.7	109.5
C49	C46	H46	108.4	109.4
C49	C46	H46A	107.7	109.5
C46	C49	H49	109.5	109.5
C46	C49	H49A	109.5	109.5
C46	C49	H49B	109.5	109.5
C31	N34	O35	116.6	120.0
C31	N34	C37	118.4	120.0
N34	C31	H31	108.8	109.5
N34	C31	H31A	108.2	109.5
O35	N34	C37	124.9	120.0
N34	O35	HO35	109.5	114.0
N34	C37	O39	116.6	119.9
N34	C37	H37	121.7	120.0
O39	C37	H37	121.7	120.0
C15	N17	C18	111.3	108.7
N17	C15	C24	105.2	107.3
N17	C15	C3	109.2	109.9
N17	C15	H15	111.9	109.8
N17	C18	C21	103.3	104.8
N17	C18	H18	111.6	110.4
N17	C18	H18A	112.9	110.4
C24	C15	C3	107.9	109.9
C15	C24	C21	103.2	103.0
C24	C15	H15	113.1	109.9
C15	C24	H24	111.7	110.7
C15	C24	H24A	113.0	110.7
C15	C3	O1	115.2	124.8
C15	C3	N4	132.8	124.9
C3	C15	H15	109.4	110.0
C24	C21	C18	104.4	101.4
C21	C24	H24	111.6	110.7
C21	C24	H24A	113.0	110.7
C24	C21	H21	111.2	111.0
C24	C21	H21A	112.3	111.0
C18	C21	H21	111.2	111.2
C18	C21	H21A	112.3	110.9
C21	C18	H18	111.6	110.5
C21	C18	H18A	112.9	110.3
O1	C3	N4	112.0	110.3
C3	O1	C6	103.3	108.1
C3	N4	C5	108.0	108.8
O1	C6	C5	110.8	106.2
O1	C6	C7	125.5	133.9
C5	C6	C7	123.7	119.9
C6	C5	N4	105.9	106.6
C6	C5	C13	120.4	119.6
C6	C7	C9	115.9	119.8
C6	C7	H7	122.0	120.1
N4	C5	C13	133.8	133.8
C5	C13	C11	116.8	119.7
C5	C13	H13	121.6	120.1
C7	C9	C11	120.9	120.5
C9	C7	H7	122.0	120.1
C7	C9	H9	119.6	119.8
C9	C11	C13	122.3	120.4
C11	C9	H9	119.5	119.8
C9	C11	H11	118.9	119.8
C13	C11	H11	118.9	119.8
C11	C13	H13	121.6	120.2
H40	C40	H40A	111.9	109.5
H43	C43	H43A	108.6	109.5
H46	C46	H46A	111.9	109.4
H49	C49	H49A	109.4	109.4
H49	C49	H49B	109.5	109.5
H49A	C49	H49B	109.5	109.4
H31	C31	H31A	111.2	109.4
H24	C24	H24A	104.7	110.8
H21	C21	H21A	105.6	110.9
H18	C18	H18A	104.8	110.4

Torsion Angles for NVC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C29	C27	O28	N17	177.3	180.3
O28	C27	C29	C40	62.9	0.0
O28	C27	C29	C31	302.1	240.0
O28	C27	C29	H29	179.9	120.0
O28	C27	N17	C15	359.2	360.0
O28	C27	N17	C18	178.8	179.7
O28	C27	C29	N17	182.7	179.7
C29	C27	N17	C15	181.9	179.7
C29	C27	N17	C18	1.5	359.4
C40	C29	C27	C31	120.8	120.0
C27	C29	C40	C43	57.5	66.6
C40	C29	C27	H29	243.0	240.0
C27	C29	C40	H40	177.5	186.7
C27	C29	C40	H40A	298.8	306.7
C27	C29	C31	N34	190.1	183.2
C31	C29	C27	H29	122.2	119.9
C27	C29	C31	H31	310.1	303.2
C27	C29	C31	H31A	71.1	63.2
O28	C27	N17	C29	177.3	180.3
N17	C27	C29	C40	240.2	180.3
N17	C27	C29	C31	119.4	60.3
N17	C27	C29	H29	357.2	300.3
C15	N17	C27	C18	180.4	180.3
C27	N17	C15	C24	171.8	181.0
C27	N17	C15	C3	287.4	300.4
C27	N17	C15	H15	48.6	61.6
C27	N17	C18	C21	166.0	155.8
C27	N17	C18	H18	286.0	274.8
C27	N17	C18	H18A	43.7	37.1
C40	C29	C27	N17	240.2	180.3
C27	C29	C40	C31	241.7	240.0
C27	C29	C40	H29	119.6	120.0
C40	C29	C31	N34	66.8	63.1
C31	C29	C40	H29	237.9	240.0
C40	C29	C31	H31	186.9	183.2
C40	C29	C31	H31A	307.8	303.1
C29	C40	C43	C46	181.6	184.6
C43	C40	C29	H40	240.0	240.0
C43	C40	C29	H40A	118.7	119.9
C29	C40	C43	H43	301.6	304.6
C29	C40	C43	H43A	61.1	64.6
H40	C40	C29	H40A	238.7	240.0
C31	C29	C27	N17	119.4	60.3
C27	C29	C31	C40	123.3	120.1
C27	C29	C31	H29	240.3	240.1
C31	C29	C40	C43	175.8	186.7
C40	C29	C31	H29	117.0	120.0
C31	C29	C40	H40	295.8	306.7
C31	C29	C40	H40A	57.1	66.7
C29	C31	N34	O35	73.4	255.9
C29	C31	N34	C37	253.3	76.0
N34	C31	C29	H31	240.0	239.9
N34	C31	C29	H31A	119.0	120.0
H31	C31	C29	H31A	239.1	240.0
C43	C40	C29	C31	175.8	186.7
C43	C40	C29	H29	297.9	306.7
C29	C40	C43	H40	120.0	120.0
C29	C40	C43	H40A	241.3	240.1
C40	C43	C46	C49	172.2	180.1
C46	C43	C40	H43	240.0	240.0
C46	C43	C40	H43A	120.5	120.0
C40	C43	C46	H46	292.2	300.0
C40	C43	C46	H46A	53.6	60.0
H40	C40	C43	H40A	121.3	120.0
H43	C43	C40	H43A	240.5	240.0
C46	C43	C40	H40	61.6	64.6
C46	C43	C40	H40A	300.3	304.5
C40	C43	C46	H43	120.0	120.1
C40	C43	C46	H43A	239.5	240.0
C49	C46	C43	H46	240.0	240.0
C49	C46	C43	H46A	118.7	120.1
C43	C46	C49	H49	335.0	180.0
C43	C46	C49	H49A	94.9	300.0
C43	C46	C49	H49B	214.9	60.0
H43	C43	C46	H43A	119.5	120.0
H46	C46	C43	H46A	238.7	240.1
C49	C46	C43	H43	52.3	60.0
C49	C46	C43	H43A	292.7	300.0
C43	C46	C49	H46	120.0	120.0
C43	C46	C49	H46A	241.4	239.9
H46	C46	C49	H46A	121.3	119.9
H49	C49	C46	H49A	240.0	240.1
H49	C49	C46	H49B	120.0	120.1
H49A	C49	C46	H49B	240.0	240.0
N34	C31	C29	H29	309.8	303.1
C29	C31	N34	H31	120.0	120.1
C29	C31	N34	H31A	240.9	240.0
O35	N34	C31	C37	180.1	179.9
C31	N34	O35	HO35	272.0	180.0
C31	N34	C37	O39	168.1	180.0
C31	N34	C37	H37	348.1	360.0
H31	C31	N34	H31A	121.0	120.0
C31	N34	O35	C37	179.9	180.1
O35	N34	C31	H31	313.4	135.9
O35	N34	C31	H31A	192.5	15.9
O35	N34	C37	O39	348.0	0.1
O35	N34	C37	H37	168.0	180.0
C31	N34	C37	O35	180.1	179.9
C37	N34	C31	H31	133.3	315.9
C37	N34	C31	H31A	12.4	196.0
C37	N34	O35	HO35	92.1	359.9
O39	C37	N34	H37	180.0	180.1
N34	C37	O39	H37	180.0	179.9
C27	N17	C15	C18	179.7	179.7
C15	N17	C18	C21	345.7	335.6
C15	N17	C18	H18	105.7	94.5
C15	N17	C18	H18A	223.4	216.8
C24	C15	N17	C3	244.4	240.6
N17	C15	C24	C21	26.9	22.2
C24	C15	N17	H15	123.2	119.4
N17	C15	C24	H24	146.9	140.5
N17	C15	C24	H24A	264.6	263.8
N17	C15	C3	O1	143.1	135.0
N17	C15	C3	N4	324.0	314.7
C3	C15	N17	H15	238.8	238.8
C27	N17	C18	C15	180.3	180.3
C18	N17	C15	C24	352.1	1.3
C18	N17	C15	C3	107.7	120.7
C18	N17	C15	H15	228.9	241.9
C24	C21	C18	N17	30.9	37.3
N17	C18	C21	H21	270.8	279.3
N17	C18	C21	H21A	152.8	155.3
C21	C18	N17	H18	240.0	241.0
C21	C18	N17	H18A	122.3	118.7
H18	C18	N17	H18A	242.3	237.7
C24	C15	N17	C18	352.1	1.3
N17	C15	C24	C3	116.5	119.4
N17	C15	C24	H15	237.6	240.6
C24	C15	C3	O1	257.0	252.8
C24	C15	C3	N4	77.9	72.5
C3	C15	C24	H15	121.1	121.2
C15	C24	C21	C18	324.2	324.3
C21	C24	C15	H24	240.0	241.7
C21	C24	C15	H24A	122.3	118.4
C15	C24	C21	H21	84.2	82.5
C15	C24	C21	H21A	202.3	206.4
H24	C24	C15	H24A	242.3	236.7
C3	C15	N17	C18	107.7	120.7
N17	C15	C3	C24	246.1	242.2
N17	C15	C3	H15	122.7	121.1
C3	C15	C24	C21	270.4	262.8
C24	C15	C3	H15	236.6	238.9
C3	C15	C24	H24	30.4	21.1
C3	C15	C24	H24A	148.1	144.4
O1	C3	C15	N4	179.1	180.3
C15	C3	O1	C6	179.8	180.0
C15	C3	N4	C5	180.4	179.8
N17	C18	C21	C24	30.9	37.3
C21	C24	C15	C3	270.4	262.8
C21	C24	C15	H15	149.3	141.6
C15	C24	C21	H24	120.0	118.4
C15	C24	C21	H24A	237.7	241.6
C18	C21	C24	H21	240.0	241.8
C18	C21	C24	H21A	121.9	117.9
C24	C21	C18	H18	270.9	278.4
C24	C21	C18	H18A	153.1	156.1
H24	C24	C21	H24A	117.7	123.2
H21	C21	C24	H21A	241.9	236.1
N17	C18	C21	H18	120.0	118.9
N17	C18	C21	H18A	237.7	241.2
C18	C21	C24	H24	204.2	206.0
C18	C21	C24	H24A	86.5	82.7
C24	C21	C18	H21	120.0	118.0
C24	C21	C18	H21A	238.1	242.0
H21	C21	C18	H21A	118.1	124.0
H18	C18	C21	H18A	117.7	122.3
C15	C3	O1	N4	180.7	179.7
O1	C3	C15	H15	20.4	13.9
O1	C3	N4	C5	1.2	359.6
C3	O1	C6	C5	0.2	0.0
C3	O1	C6	C7	180.0	180.0
C15	C3	N4	O1	179.1	180.3
N4	C3	C15	H15	201.3	193.6
N4	C3	O1	C6	359.1	0.3
C6	C5	N4	C3	359.0	0.4
C3	N4	C5	C13	180.3	180.1
C6	O1	C3	N4	359.1	0.3
C5	C6	O1	C7	180.2	180.0
O1	C6	C5	N4	0.5	359.7
O1	C6	C5	C13	179.4	180.0
O1	C6	C7	C9	180.2	180.0
O1	C6	C7	H7	0.2	360.0
C3	N4	C5	C6	359.0	0.4
O1	C6	C5	C7	179.8	180.0
C5	C6	C7	C9	360.0	360.0
C5	C6	C7	H7	180.0	180.0
N4	C5	C6	C13	181.1	179.7
C6	C5	C13	C11	0.9	360.0
C6	C5	C13	H13	180.9	180.0
O1	C6	C7	C5	180.2	180.0
C7	C6	C5	N4	180.7	179.7
C7	C6	C5	C13	359.5	360.0
C6	C7	C9	C11	0.0	0.1
C9	C7	C6	H7	180.0	180.0
C6	C7	C9	H9	180.0	180.0
N4	C5	C6	C7	180.7	179.7
C6	C5	N4	C13	178.7	180.3
N4	C5	C13	C11	179.4	180.3
N4	C5	C13	H13	359.4	0.4
C13	C5	C6	C7	359.5	360.0
C6	C5	C13	N4	181.5	179.6
C9	C11	C13	C5	359.1	0.1
C5	C13	C11	H11	179.1	180.0
C11	C13	C5	H13	180.0	180.0
C6	C7	C9	H7	180.0	180.0
C7	C9	C11	C13	0.5	359.9
C11	C9	C7	H9	180.0	180.0
C7	C9	C11	H11	180.5	180.0
C5	C13	C11	C9	359.1	0.1
C11	C9	C7	H7	180.0	180.1
C7	C9	C11	H9	180.0	180.0
C13	C11	C9	H11	180.0	179.9
C9	C11	C13	H13	179.1	180.0
C5	C13	C11	H13	180.0	180.0
C13	C11	C9	H9	180.5	179.9
C9	C11	C13	H11	180.0	180.1
H29	C29	C27	N17	357.2	300.3
C27	C29	H29	C40	237.5	240.0
C27	C29	H29	C31	117.5	119.9
C40	C29	H29	C31	240.0	240.0
H29	C29	C40	C43	297.9	306.7
H29	C29	C40	H40	57.9	66.7
H29	C29	C40	H40A	179.2	186.7
H29	C29	C31	N34	309.8	303.1
H29	C29	C31	H31	69.8	63.2
H29	C29	C31	H31A	190.8	183.1
H40	C40	C29	C31	295.8	306.7
C29	C40	H40	C43	237.5	240.0
H40	C40	C29	H29	57.9	66.7
C29	C40	H40	H40A	118.7	120.0
H40	C40	C43	C46	61.6	64.6
C43	C40	H40	H40A	241.3	240.0
H40	C40	C43	H43	181.6	184.6
H40	C40	C43	H43A	301.1	304.6
H40A	C40	C29	C31	57.1	66.7
C29	C40	H40A	C43	121.7	119.9
H40A	C40	C29	H29	179.2	186.7
C29	C40	H40A	H40	240.8	240.0
H40A	C40	C43	C46	300.3	304.5
C43	C40	H40A	H40	119.1	120.0
H40A	C40	C43	H43	60.3	64.5
H40A	C40	C43	H43A	179.8	184.6
C40	C43	H43	C46	241.0	240.0
H43	C43	C40	H40	181.6	184.6
H43	C43	C40	H40A	60.3	64.5
C40	C43	H43	H43A	120.5	120.0
H43	C43	C46	C49	52.3	60.0
C46	C43	H43	H43A	239.5	240.1
H43	C43	C46	H46	172.3	180.0
H43	C43	C46	H46A	293.6	299.9
C40	C43	H43A	C46	119.4	120.0
H43A	C43	C40	H40	301.1	304.6
H43A	C43	C40	H40A	179.8	184.6
C40	C43	H43A	H43	239.7	239.9
H43A	C43	C46	C49	292.7	300.0
C46	C43	H43A	H43	120.3	119.9
H43A	C43	C46	H46	52.7	60.0
H43A	C43	C46	H46A	174.1	180.0
C43	C46	H46	C49	237.4	240.0
H46	C46	C43	H43	172.3	180.0
H46	C46	C43	H43A	52.7	60.0
C43	C46	H46	H46A	118.7	120.0
C49	C46	H46	H46A	241.3	240.0
H46	C46	C49	H49	214.9	60.0
H46	C46	C49	H49A	334.9	180.0
H46	C46	C49	H49B	94.9	300.0
C43	C46	H46A	C49	121.7	120.1
H46A	C46	C43	H43	293.6	299.9
H46A	C46	C43	H43A	174.1	180.0
C43	C46	H46A	H46	240.8	240.0
C49	C46	H46A	H46	119.1	119.9
H46A	C46	C49	H49	93.6	300.1
H46A	C46	C49	H49A	213.6	60.0
H46A	C46	C49	H49B	333.6	180.0
H49	C49	C46	H46	214.9	60.0
H49	C49	C46	H46A	93.6	300.1
C46	C49	H49	H49A	120.0	120.0
C46	C49	H49	H49B	240.0	239.9
H49A	C49	H49	H49B	120.0	119.9
H49A	C49	C46	H46	334.9	180.0
H49A	C49	C46	H46A	213.6	60.0
C46	C49	H49A	H49	240.0	240.0
C46	C49	H49A	H49B	120.0	120.1
H49	C49	H49A	H49B	240.0	240.1
H49B	C49	C46	H46	94.9	300.0
H49B	C49	C46	H46A	333.6	180.0
C46	C49	H49B	H49	120.0	120.1
C46	C49	H49B	H49A	240.0	240.0
H49	C49	H49B	H49A	120.0	119.9
C29	C31	H31	N34	238.2	240.0
H31	C31	C29	H29	69.8	63.2
C29	C31	H31	H31A	119.1	120.0
H31	C31	N34	O35	313.4	135.9
H31	C31	N34	C37	133.3	315.9
N34	C31	H31	H31A	240.9	240.0
C29	C31	H31A	N34	121.2	120.0
H31A	C31	C29	H29	190.8	183.1
C29	C31	H31A	H31	240.6	240.0
H31A	C31	N34	O35	192.5	15.9
H31A	C31	N34	C37	12.4	196.0
N34	C31	H31A	H31	119.4	120.0
HO35	O35	N34	C37	92.1	359.9
N34	C37	H37	O39	180.0	180.1
H15	C15	N17	C18	228.9	241.9
N17	C15	H15	C24	118.6	117.8
N17	C15	H15	C3	238.9	238.9
C24	C15	H15	C3	120.3	121.1
H15	C15	C24	C21	149.3	141.6
H15	C15	C24	H24	269.3	259.9
H15	C15	C24	H24A	27.0	23.2
H15	C15	C3	O1	20.4	13.9
H15	C15	C3	N4	201.3	193.6
H24	C24	C15	C3	30.4	21.1
C15	C24	H24	C21	245.1	246.5
H24	C24	C15	H15	269.3	259.9
C15	C24	H24	H24A	122.6	123.3
H24	C24	C21	C18	204.2	206.0
C21	C24	H24	H24A	237.5	236.8
H24	C24	C21	H21	324.2	324.2
H24	C24	C21	H21A	82.3	88.0
H24A	C24	C15	C3	148.1	144.4
C15	C24	H24A	C21	116.6	113.6
H24A	C24	C15	H15	27.0	23.2
C15	C24	H24A	H24	238.3	236.7
H24A	C24	C21	C18	86.5	82.7
C21	C24	H24A	H24	121.7	123.2
H24A	C24	C21	H21	206.5	200.9
H24A	C24	C21	H21A	324.6	324.8
C24	C21	H21	C18	244.1	247.9
H21	C21	C24	H24	324.2	324.2
H21	C21	C24	H24A	206.5	200.9
C24	C21	H21	H21A	122.1	123.9
C18	C21	H21	H21A	237.9	236.0
H21	C21	C18	H18	150.8	160.4
H21	C21	C18	H18A	33.1	38.0
C24	C21	H21A	C18	117.3	112.0
H21A	C21	C24	H24	82.3	88.0
H21A	C21	C24	H24A	324.6	324.8
C24	C21	H21A	H21	238.6	236.1
C18	C21	H21A	H21	121.4	124.1
H21A	C21	C18	H18	32.8	36.4
H21A	C21	C18	H18A	275.0	274.1
N17	C18	H18	C21	245.0	244.6
N17	C18	H18	H18A	122.5	122.3
H18	C18	C21	H21	150.8	160.4
H18	C18	C21	H21A	32.8	36.4
C21	C18	H18	H18A	237.5	237.7
N17	C18	H18A	C21	116.7	115.3
N17	C18	H18A	H18	238.4	237.7
H18A	C18	C21	H21	33.1	38.0
H18A	C18	C21	H21A	275.0	274.1
C21	C18	H18A	H18	121.7	122.4
C6	C7	H7	C9	180.0	180.0
H7	C7	C9	C11	180.0	180.1
H7	C7	C9	H9	0.0	0.0
C7	C9	H9	C11	180.0	180.0
H9	C9	C7	H7	0.0	0.0
H9	C9	C11	C13	180.5	179.9
H9	C9	C11	H11	0.5	0.0
C9	C11	H11	C13	180.0	179.9
H11	C11	C9	H9	0.5	0.0
H11	C11	C13	H13	359.1	360.0
C5	C13	H13	C11	180.0	180.0
H13	C13	C11	H11	359.1	360.0