PDB Chemical Component NVA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NVA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.454 |
1.470 |
| N |
H |
1.021 |
1.009 |
| N |
H2 |
1.020 |
1.008 |
| CA |
CB |
1.541 |
1.529 |
| CA |
C |
1.519 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.563 |
1.530 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
CD |
1.506 |
1.529 |
| CG |
HG2 |
1.115 |
1.090 |
| CG |
HG3 |
1.114 |
1.090 |
| CD |
HD1 |
1.115 |
1.090 |
| CD |
HD2 |
1.115 |
1.090 |
| CD |
HD3 |
1.115 |
1.090 |
| C |
O |
1.226 |
1.207 |
| C |
OXT |
1.331 |
1.342 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for NVA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.2 |
106.7 |
| CA |
N |
H2 |
112.0 |
106.7 |
| N |
CA |
CB |
110.3 |
109.4 |
| N |
CA |
C |
113.2 |
109.4 |
| N |
CA |
HA |
106.1 |
109.5 |
| H |
N |
H2 |
111.9 |
106.7 |
| CB |
CA |
C |
108.6 |
109.5 |
| CB |
CA |
HA |
110.9 |
109.5 |
| CA |
CB |
CG |
105.7 |
109.5 |
| CA |
CB |
HB2 |
113.6 |
109.4 |
| CA |
CB |
HB3 |
113.6 |
109.5 |
| C |
CA |
HA |
107.7 |
109.5 |
| CA |
C |
O |
120.6 |
120.1 |
| CA |
C |
OXT |
115.2 |
120.0 |
| CG |
CB |
HB2 |
113.7 |
109.4 |
| CG |
CB |
HB3 |
113.7 |
109.4 |
| CB |
CG |
CD |
111.2 |
109.5 |
| CB |
CG |
HG2 |
111.5 |
109.5 |
| CB |
CG |
HG3 |
111.5 |
109.4 |
| HB2 |
CB |
HB3 |
96.8 |
109.5 |
| CD |
CG |
HG2 |
111.6 |
109.5 |
| CD |
CG |
HG3 |
111.6 |
109.5 |
| CG |
CD |
HD1 |
111.1 |
109.5 |
| CG |
CD |
HD2 |
111.5 |
109.5 |
| CG |
CD |
HD3 |
111.6 |
109.5 |
| HG2 |
CG |
HG3 |
98.8 |
109.4 |
| HD1 |
CD |
HD2 |
111.7 |
109.4 |
| HD1 |
CD |
HD3 |
111.6 |
109.5 |
| HD2 |
CD |
HD3 |
98.8 |
109.4 |
| O |
C |
OXT |
124.2 |
119.9 |
| C |
OXT |
HXT |
115.2 |
120.0 |
Torsion Angles for NVA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| CB |
CA |
N |
C |
238.1 |
240.0 |
| CB |
CA |
N |
HA |
120.2 |
120.0 |
| N |
CA |
CB |
CG |
286.0 |
300.0 |
| N |
CA |
CB |
HB2 |
51.3 |
180.0 |
| N |
CA |
CB |
HB3 |
160.7 |
60.0 |
| C |
CA |
N |
HA |
242.1 |
240.0 |
| N |
CA |
C |
O |
314.4 |
330.0 |
| N |
CA |
C |
OXT |
134.6 |
150.1 |
| CA |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CA |
CB |
180.0 |
53.8 |
| H |
N |
CA |
C |
301.9 |
173.8 |
| H |
N |
CA |
HA |
59.9 |
293.9 |
| CA |
N |
H2 |
H |
124.3 |
113.8 |
| H2 |
N |
CA |
CB |
54.8 |
300.0 |
| H2 |
N |
CA |
C |
176.6 |
60.0 |
| H2 |
N |
CA |
HA |
294.6 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
53.8 |
| CB |
CA |
N |
H2 |
54.8 |
300.0 |
| N |
CA |
CB |
C |
124.5 |
120.0 |
| N |
CA |
CB |
HA |
242.8 |
240.0 |
| C |
CA |
CB |
HA |
118.2 |
120.1 |
| CB |
CA |
C |
O |
77.2 |
89.9 |
| CB |
CA |
C |
OXT |
257.4 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
120.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
CG |
CD |
194.5 |
180.1 |
| CA |
CB |
CG |
HG2 |
319.7 |
60.0 |
| CA |
CB |
CG |
HG3 |
69.2 |
300.1 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
120.0 |
| C |
CA |
N |
H |
301.9 |
173.8 |
| C |
CA |
N |
H2 |
176.6 |
60.0 |
| N |
CA |
C |
CB |
237.2 |
240.1 |
| N |
CA |
C |
HA |
117.0 |
120.0 |
| CB |
CA |
C |
HA |
239.8 |
240.0 |
| C |
CA |
CB |
CG |
161.5 |
180.0 |
| C |
CA |
CB |
HB2 |
286.7 |
60.1 |
| C |
CA |
CB |
HB3 |
36.1 |
300.0 |
| O |
C |
CA |
OXT |
179.9 |
179.8 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
H |
59.9 |
293.9 |
| HA |
CA |
N |
H2 |
294.6 |
180.0 |
| N |
CA |
HA |
CB |
119.7 |
119.9 |
| N |
CA |
HA |
C |
238.5 |
240.0 |
| CB |
CA |
HA |
C |
118.8 |
120.1 |
| HA |
CA |
CB |
CG |
43.2 |
60.0 |
| HA |
CA |
CB |
HB2 |
168.5 |
300.0 |
| HA |
CA |
CB |
HB3 |
277.9 |
180.0 |
| HA |
CA |
C |
O |
197.5 |
209.9 |
| HA |
CA |
C |
OXT |
17.6 |
30.1 |
| CG |
CB |
CA |
C |
161.5 |
180.0 |
| CG |
CB |
CA |
HA |
43.2 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.2 |
240.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.0 |
| CD |
CG |
CB |
HG2 |
234.7 |
120.1 |
| CD |
CG |
CB |
HG3 |
125.3 |
240.0 |
| CB |
CG |
CD |
HD1 |
180.0 |
180.0 |
| CB |
CG |
CD |
HD2 |
305.3 |
300.0 |
| CB |
CG |
CD |
HD3 |
54.7 |
59.9 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
119.9 |
| HB2 |
CB |
CA |
C |
286.7 |
60.1 |
| HB2 |
CB |
CA |
HA |
168.5 |
300.0 |
| CA |
CB |
HB2 |
CG |
239.1 |
120.0 |
| CA |
CB |
HB2 |
HB3 |
119.5 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
240.4 |
119.9 |
| HB2 |
CB |
CG |
CD |
69.2 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
194.5 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
304.0 |
60.1 |
| HB3 |
CB |
CA |
C |
36.1 |
300.0 |
| HB3 |
CB |
CA |
HA |
277.9 |
180.0 |
| CA |
CB |
HB3 |
CG |
120.9 |
239.9 |
| CA |
CB |
HB3 |
HB2 |
240.5 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
119.6 |
240.1 |
| HB3 |
CB |
CG |
CD |
319.7 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
85.0 |
299.9 |
| HB3 |
CB |
CG |
HG3 |
194.5 |
180.0 |
| CD |
CG |
CB |
HB2 |
69.2 |
300.0 |
| CD |
CG |
CB |
HB3 |
319.7 |
60.0 |
| CB |
CG |
CD |
HG2 |
125.2 |
239.9 |
| CB |
CG |
CD |
HG3 |
234.8 |
120.0 |
| HG2 |
CG |
CD |
HG3 |
109.5 |
240.1 |
| HD1 |
CD |
CG |
HD2 |
234.7 |
240.1 |
| HD1 |
CD |
CG |
HD3 |
125.2 |
120.1 |
| HD2 |
CD |
CG |
HD3 |
250.6 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
194.5 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
85.0 |
299.9 |
| CB |
CG |
HG2 |
CD |
235.0 |
120.1 |
| CB |
CG |
HG2 |
HG3 |
117.4 |
240.1 |
| CD |
CG |
HG2 |
HG3 |
242.4 |
120.0 |
| HG2 |
CG |
CD |
HD1 |
54.7 |
300.1 |
| HG2 |
CG |
CD |
HD2 |
180.1 |
60.0 |
| HG2 |
CG |
CD |
HD3 |
289.5 |
180.0 |
| HG3 |
CG |
CB |
HB2 |
304.0 |
60.1 |
| HG3 |
CG |
CB |
HB3 |
194.5 |
180.0 |
| CB |
CG |
HG3 |
CD |
125.0 |
239.9 |
| CB |
CG |
HG3 |
HG2 |
242.6 |
119.9 |
| CD |
CG |
HG3 |
HG2 |
117.6 |
240.0 |
| HG3 |
CG |
CD |
HD1 |
305.2 |
60.0 |
| HG3 |
CG |
CD |
HD2 |
70.5 |
180.0 |
| HG3 |
CG |
CD |
HD3 |
179.9 |
299.9 |
| HD1 |
CD |
CG |
HG2 |
54.7 |
300.1 |
| HD1 |
CD |
CG |
HG3 |
305.2 |
60.0 |
| CG |
CD |
HD1 |
HD2 |
125.2 |
120.0 |
| CG |
CD |
HD1 |
HD3 |
234.8 |
239.9 |
| HD2 |
CD |
HD1 |
HD3 |
109.5 |
120.0 |
| HD2 |
CD |
CG |
HG2 |
180.1 |
60.0 |
| HD2 |
CD |
CG |
HG3 |
70.5 |
180.0 |
| CG |
CD |
HD2 |
HD1 |
235.0 |
240.0 |
| CG |
CD |
HD2 |
HD3 |
117.5 |
120.0 |
| HD1 |
CD |
HD2 |
HD3 |
242.5 |
240.0 |
| HD3 |
CD |
CG |
HG2 |
289.5 |
180.0 |
| HD3 |
CD |
CG |
HG3 |
179.9 |
299.9 |
| CG |
CD |
HD3 |
HD1 |
125.0 |
120.1 |
| CG |
CD |
HD3 |
HD2 |
242.6 |
240.0 |
| HD1 |
CD |
HD3 |
HD2 |
117.6 |
119.9 |
| O |
C |
CA |
HA |
197.5 |
209.9 |
| CA |
C |
O |
OXT |
180.2 |
180.2 |
| O |
C |
OXT |
HXT |
0.2 |
0.1 |
| OXT |
C |
CA |
HA |
17.6 |
30.1 |
| CA |
C |
OXT |
O |
179.8 |
179.8 |