PDB Chemical Component NUJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NUJ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O1 |
C4 |
1.411 |
1.429 |
C4 |
C3 |
1.525 |
1.538 |
C4 |
C5 |
1.525 |
1.539 |
C3 |
C2 |
1.538 |
1.538 |
C5 |
C2 |
1.540 |
1.537 |
C1 |
N1 |
1.467 |
1.466 |
C2 |
N1 |
1.453 |
1.465 |
C9 |
C8 |
1.499 |
1.506 |
C7 |
C8 |
1.381 |
1.381 |
C7 |
C6 |
1.401 |
1.396 |
N1 |
C6 |
1.408 |
1.386 |
C8 |
N2 |
1.342 |
1.326 |
C6 |
N3 |
1.347 |
1.330 |
N2 |
C10 |
1.333 |
1.317 |
N3 |
C10 |
1.337 |
1.318 |
C10 |
C11 |
1.495 |
1.507 |
C4 |
H1 |
1.100 |
1.089 |
C5 |
H2 |
1.100 |
1.090 |
C5 |
H3 |
1.100 |
1.090 |
C7 |
H4 |
1.080 |
1.080 |
C1 |
H5 |
1.100 |
1.090 |
C1 |
H6 |
1.100 |
1.089 |
C1 |
H7 |
1.100 |
1.090 |
C11 |
H8 |
1.100 |
1.091 |
C11 |
H9 |
1.100 |
1.090 |
C11 |
H10 |
1.100 |
1.090 |
C2 |
H11 |
1.100 |
1.090 |
C3 |
H12 |
1.100 |
1.089 |
C3 |
H13 |
1.100 |
1.090 |
C9 |
H14 |
1.100 |
1.089 |
C9 |
H15 |
1.100 |
1.091 |
C9 |
H16 |
1.100 |
1.090 |
O1 |
H17 |
0.950 |
0.967 |
Bond Angles for NUJ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C4 |
H1 |
110.7 |
112.9 |
C5 |
C4 |
C3 |
89.1 |
87.1 |
C4 |
C3 |
C2 |
88.7 |
87.1 |
C3 |
C4 |
H1 |
109.0 |
113.6 |
C4 |
C3 |
H12 |
114.4 |
113.6 |
C4 |
C3 |
H13 |
114.4 |
113.6 |
C4 |
C5 |
C2 |
88.7 |
87.1 |
C5 |
C4 |
H1 |
109.0 |
113.6 |
C4 |
C5 |
H2 |
114.4 |
113.6 |
C4 |
C5 |
H3 |
114.4 |
113.6 |
C3 |
C2 |
H11 |
108.7 |
113.7 |
C2 |
C5 |
H2 |
114.4 |
113.6 |
C2 |
C5 |
H3 |
114.4 |
113.6 |
C5 |
C2 |
H11 |
108.7 |
113.6 |
C9 |
C8 |
N2 |
117.0 |
120.4 |
C7 |
C8 |
N2 |
120.7 |
119.2 |
C8 |
C7 |
H4 |
121.1 |
120.8 |
N1 |
C6 |
N3 |
117.5 |
120.5 |
C8 |
N2 |
C10 |
118.5 |
121.0 |
C6 |
N3 |
C10 |
117.6 |
120.6 |
N3 |
C10 |
C11 |
117.6 |
119.0 |
C10 |
C11 |
H8 |
109.5 |
109.5 |
C10 |
C11 |
H9 |
109.5 |
109.5 |
C10 |
C11 |
H10 |
109.5 |
109.5 |
H2 |
C5 |
H3 |
109.5 |
112.9 |
H5 |
C1 |
H6 |
109.5 |
109.5 |
H5 |
C1 |
H7 |
109.5 |
109.5 |
H6 |
C1 |
H7 |
109.5 |
109.5 |
H8 |
C11 |
H9 |
109.4 |
109.5 |
H8 |
C11 |
H10 |
109.5 |
109.4 |
H9 |
C11 |
H10 |
109.5 |
109.5 |
H12 |
C3 |
H13 |
109.5 |
112.9 |
H14 |
C9 |
H15 |
109.5 |
109.5 |
H14 |
C9 |
H16 |
109.5 |
109.5 |
H15 |
C9 |
H16 |
109.5 |
109.5 |
Torsion Angles for NUJ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3 |
C4 |
O1 |
H1 |
126.8 |
131.3 |
O1 |
C4 |
C3 |
H12 |
256.4 |
254.5 |
O1 |
C4 |
C3 |
H13 |
23.8 |
25.5 |
C5 |
C4 |
O1 |
H1 |
232.8 |
228.8 |
O1 |
C4 |
C5 |
H2 |
336.5 |
334.6 |
O1 |
C4 |
C5 |
H3 |
104.0 |
105.5 |
O1 |
C4 |
C3 |
H1 |
232.4 |
229.1 |
C3 |
C4 |
C5 |
C2 |
342.5 |
334.6 |
C5 |
C4 |
C3 |
H1 |
109.8 |
114.5 |
C3 |
C4 |
C5 |
H2 |
98.8 |
89.1 |
C3 |
C4 |
C5 |
H3 |
226.2 |
220.1 |
C4 |
C3 |
C2 |
H11 |
233.5 |
220.0 |
H12 |
C3 |
C4 |
H13 |
232.6 |
229.0 |
O1 |
C4 |
C5 |
H1 |
127.9 |
130.9 |
C5 |
C4 |
C3 |
C2 |
17.5 |
25.4 |
C3 |
C4 |
C5 |
H1 |
250.2 |
245.5 |
C5 |
C4 |
C3 |
H12 |
133.8 |
140.0 |
C5 |
C4 |
C3 |
H13 |
261.2 |
270.9 |
C2 |
C5 |
C4 |
H2 |
243.7 |
245.4 |
C2 |
C5 |
C4 |
H3 |
116.3 |
114.5 |
C4 |
C5 |
C2 |
H11 |
126.5 |
140.1 |
H2 |
C5 |
C4 |
H3 |
232.6 |
229.1 |
C2 |
C3 |
C4 |
H1 |
267.7 |
270.9 |
C4 |
C3 |
C2 |
H12 |
116.3 |
114.6 |
C4 |
C3 |
C2 |
H13 |
243.7 |
245.5 |
C3 |
C2 |
C5 |
H2 |
261.1 |
270.9 |
C3 |
C2 |
C5 |
H3 |
133.7 |
140.0 |
C5 |
C2 |
C3 |
H11 |
109.1 |
114.6 |
C2 |
C5 |
C4 |
C3 |
342.5 |
334.6 |
C4 |
C3 |
C2 |
C5 |
342.6 |
334.6 |
C2 |
C5 |
C4 |
H1 |
92.3 |
89.1 |
C4 |
C5 |
C2 |
H2 |
116.3 |
114.6 |
C4 |
C5 |
C2 |
H3 |
243.7 |
245.4 |
C3 |
C2 |
C5 |
H11 |
250.9 |
245.3 |
H2 |
C5 |
C2 |
H3 |
127.4 |
130.9 |
C7 |
C8 |
C9 |
N2 |
180.1 |
180.0 |
C9 |
C8 |
C7 |
H4 |
359.9 |
360.0 |
C9 |
C8 |
N2 |
C10 |
180.1 |
180.0 |
C9 |
C8 |
C7 |
N2 |
179.9 |
180.0 |
C7 |
C8 |
N2 |
C10 |
359.9 |
360.0 |
C7 |
C6 |
N3 |
C10 |
0.2 |
0.0 |
N1 |
C6 |
N3 |
C10 |
180.0 |
180.0 |
N2 |
C8 |
C7 |
H4 |
180.1 |
180.0 |
C6 |
N3 |
C10 |
C11 |
180.0 |
180.0 |
N2 |
C10 |
C11 |
H8 |
0.0 |
270.0 |
N2 |
C10 |
C11 |
H9 |
120.0 |
30.0 |
N2 |
C10 |
C11 |
H10 |
240.0 |
150.1 |
C8 |
N2 |
C10 |
N3 |
0.1 |
0.0 |
N3 |
C10 |
C11 |
H8 |
179.9 |
90.0 |
N3 |
C10 |
C11 |
H9 |
299.8 |
210.0 |
N3 |
C10 |
C11 |
H10 |
59.8 |
330.0 |
C8 |
N2 |
C10 |
C11 |
179.9 |
180.0 |
H8 |
C11 |
C10 |
H9 |
240.0 |
240.0 |
H8 |
C11 |
C10 |
H10 |
120.1 |
120.0 |
H9 |
C11 |
C10 |
H10 |
240.0 |
240.0 |
C5 |
C4 |
H1 |
C3 |
264.2 |
262.5 |
H1 |
C4 |
C3 |
C2 |
267.7 |
270.9 |
H1 |
C4 |
C3 |
H12 |
24.0 |
25.4 |
H1 |
C4 |
C3 |
H13 |
151.4 |
156.4 |
H1 |
C4 |
C5 |
C2 |
92.3 |
89.1 |
H1 |
C4 |
C5 |
H2 |
208.6 |
203.7 |
H1 |
C4 |
C5 |
H3 |
336.0 |
334.6 |
H2 |
C5 |
C4 |
C3 |
98.8 |
89.1 |
C4 |
C5 |
H2 |
C2 |
259.8 |
262.5 |
H2 |
C5 |
C4 |
H1 |
208.6 |
203.7 |
C4 |
C5 |
H2 |
H3 |
129.9 |
131.3 |
C2 |
C5 |
H2 |
H3 |
230.1 |
228.8 |
H2 |
C5 |
C2 |
H11 |
10.2 |
25.5 |
H3 |
C5 |
C4 |
C3 |
226.2 |
220.1 |
C4 |
C5 |
H3 |
C2 |
100.2 |
97.5 |
H3 |
C5 |
C4 |
H1 |
336.0 |
334.6 |
C4 |
C5 |
H3 |
H2 |
230.1 |
228.7 |
C2 |
C5 |
H3 |
H2 |
129.9 |
131.2 |
H3 |
C5 |
C2 |
H11 |
242.8 |
254.6 |
H4 |
C7 |
C8 |
N2 |
180.1 |
180.0 |
H6 |
C1 |
H5 |
H7 |
120.0 |
120.1 |
H5 |
C1 |
H6 |
H7 |
240.0 |
240.0 |
H5 |
C1 |
H7 |
H6 |
120.0 |
120.0 |
C10 |
C11 |
H8 |
H9 |
120.0 |
120.0 |
C10 |
C11 |
H8 |
H10 |
240.0 |
240.0 |
H9 |
C11 |
H8 |
H10 |
120.0 |
120.0 |
C10 |
C11 |
H9 |
H8 |
240.0 |
240.0 |
C10 |
C11 |
H9 |
H10 |
120.0 |
120.0 |
H8 |
C11 |
H9 |
H10 |
240.0 |
240.1 |
C10 |
C11 |
H10 |
H8 |
120.0 |
120.0 |
C10 |
C11 |
H10 |
H9 |
240.0 |
240.0 |
H8 |
C11 |
H10 |
H9 |
120.0 |
120.0 |
H11 |
C2 |
C5 |
H2 |
10.2 |
25.5 |
H11 |
C2 |
C5 |
H3 |
242.8 |
254.6 |
C4 |
C3 |
H12 |
C2 |
259.7 |
262.5 |
H12 |
C3 |
C4 |
H1 |
24.0 |
25.4 |
C4 |
C3 |
H12 |
H13 |
129.9 |
131.3 |
H12 |
C3 |
C2 |
H11 |
117.2 |
105.4 |
C4 |
C3 |
H13 |
C2 |
100.3 |
97.5 |
H13 |
C3 |
C4 |
H1 |
151.4 |
156.4 |
C4 |
C3 |
H13 |
H12 |
230.1 |
228.7 |
H13 |
C3 |
C2 |
H11 |
349.8 |
334.5 |
H14 |
C9 |
C8 |
N2 |
360.0 |
270.0 |
H15 |
C9 |
H14 |
H16 |
120.0 |
120.0 |
H15 |
C9 |
C8 |
N2 |
120.0 |
30.0 |
H14 |
C9 |
H15 |
H16 |
240.0 |
240.0 |
H16 |
C9 |
C8 |
N2 |
240.0 |
150.0 |
H14 |
C9 |
H16 |
H15 |
120.0 |
120.0 |
H17 |
O1 |
C4 |
H1 |
53.2 |
48.7 |