Atom Nomenclature for NUF

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for NUF

Atom Name (V3) Atom Name (V2)
C1 C1
F1 F1
N1 N1
O1 O1
NI1 NI1
C2 C2
F2 F2
N2 N2
O2 O2
C3 C3
N3 N3
O3 O3
C4 C4
N4 N4
O4 O4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
H2 H2
H4 H4
H5 H5
H7 H7
H9 H9
H12 H12
H14 H14
H16 H16
H17 H17
H19 H19
H21 H21
H21A H21A
H22 H22
H22A H22A
H23 H23
H23A H23A
H24 H24
H24A H24A
H25 H25
H25A H25A
H26 H26
H26A H26A
H27 H27
H27A H27A
H28 H28
H28A H28A
H29 H29
H29A H29A
H30 H30
H30A H30A
H31 H31
H31A H31A
H32 H32
H32A H32A
H33 H33
H33A H33A
H34 H34
H34A H34A