Atom Nomenclature for NU7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for NU7

Atom Name (V3) Atom Name (V2)
C1 C1
N2 N2
F01 F01
C02 C02
F03 F03
F04 F04
C05 C05
N06 N06
C07 C07
N08 N08
O09 O09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
O17 O17
N18 N18
C19 C19
C20 C20
C21 C21
C22 C22
C24 C24
C25 C25
C26 C26
N27 N27
C28 C28
C29 C29
S30 S30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
H1 H1
H1A H1A
H1B H1B
H11 H11
H12 H12
H13 H13
H15 H15
HN18 HN18
H19 H19
H19A H19A
H21 H21
H21A H21A
H22 H22
H22A H22A
H24 H24
H24A H24A
H25 H25
H25A H25A
H29 H29
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36