PDB Chemical Component NTR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NTR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.486 |
1.473 |
| N |
H |
1.000 |
0.991 |
| N |
H2 |
1.000 |
0.991 |
| CA |
CG |
1.494 |
1.491 |
| CA |
C |
1.528 |
1.529 |
| CA |
HA |
1.100 |
1.106 |
| CG |
CD1 |
1.356 |
1.395 |
| CG |
CD2 |
1.336 |
1.395 |
| CD1 |
CE1 |
1.406 |
1.394 |
| CD1 |
HD1 |
1.080 |
1.087 |
| CD2 |
CE2 |
1.368 |
1.395 |
| CD2 |
HD2 |
1.080 |
1.088 |
| CE1 |
CZ |
1.386 |
1.395 |
| CE1 |
HE1 |
1.080 |
1.087 |
| CE2 |
CZ |
1.377 |
1.395 |
| CE2 |
OE3 |
1.380 |
1.362 |
| CZ |
OH |
1.369 |
1.362 |
| OH |
HH |
0.950 |
0.970 |
| OE3 |
HE3 |
0.950 |
0.971 |
| C |
O |
1.248 |
1.225 |
| C |
OXT |
|
1.360 |
| OXT |
HXT |
|
0.981 |
Bond Angles for NTR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.4 |
117.4 |
| CA |
N |
H2 |
109.5 |
117.4 |
| N |
CA |
CG |
115.9 |
113.1 |
| N |
CA |
C |
107.6 |
107.4 |
| N |
CA |
HA |
106.8 |
107.5 |
| H |
N |
H2 |
109.5 |
123.7 |
| CG |
CA |
C |
110.9 |
112.0 |
| CG |
CA |
HA |
103.3 |
110.2 |
| CA |
CG |
CD1 |
122.9 |
120.0 |
| CA |
CG |
CD2 |
121.6 |
120.0 |
| C |
CA |
HA |
112.3 |
106.3 |
| CA |
C |
O |
118.0 |
124.8 |
| CA |
C |
OXT |
|
112.9 |
| CD1 |
CG |
CD2 |
115.4 |
120.0 |
| CG |
CD1 |
CE1 |
122.9 |
120.0 |
| CG |
CD1 |
HD1 |
118.6 |
120.5 |
| CG |
CD2 |
CE2 |
126.5 |
120.0 |
| CG |
CD2 |
HD2 |
116.7 |
120.1 |
| CE1 |
CD1 |
HD1 |
118.6 |
119.5 |
| CD1 |
CE1 |
CZ |
117.7 |
120.0 |
| CD1 |
CE1 |
HE1 |
121.1 |
119.7 |
| CE2 |
CD2 |
HD2 |
116.8 |
119.8 |
| CD2 |
CE2 |
CZ |
116.7 |
120.0 |
| CD2 |
CE2 |
OE3 |
126.9 |
119.5 |
| CZ |
CE1 |
HE1 |
121.1 |
120.3 |
| CE1 |
CZ |
CE2 |
120.3 |
120.0 |
| CE1 |
CZ |
OH |
122.2 |
119.5 |
| CZ |
CE2 |
OE3 |
116.2 |
120.5 |
| CE2 |
CZ |
OH |
117.3 |
120.6 |
| CE2 |
OE3 |
HE3 |
109.5 |
110.2 |
| CZ |
OH |
HH |
109.5 |
110.2 |
| O |
C |
OXT |
|
122.3 |
| C |
OXT |
HXT |
|
115.1 |
Torsion Angles for NTR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
120.0 |
166.6 |
| CG |
CA |
N |
C |
124.7 |
124.1 |
| CG |
CA |
N |
HA |
245.6 |
238.1 |
| N |
CA |
CG |
CD1 |
94.8 |
120.3 |
| N |
CA |
CG |
CD2 |
279.1 |
300.3 |
| C |
CA |
N |
HA |
120.8 |
114.0 |
| N |
CA |
C |
O |
37.4 |
5.3 |
| N |
CA |
C |
OXT |
|
186.5 |
| CA |
N |
H |
H2 |
240.0 |
194.3 |
| H |
N |
CA |
CG |
12.3 |
128.7 |
| H |
N |
CA |
C |
247.6 |
4.6 |
| H |
N |
CA |
HA |
126.7 |
250.6 |
| CA |
N |
H2 |
H |
120.0 |
165.7 |
| H2 |
N |
CA |
CG |
252.3 |
322.1 |
| H2 |
N |
CA |
C |
127.5 |
198.0 |
| H2 |
N |
CA |
HA |
6.7 |
84.0 |
| CG |
CA |
N |
H |
12.3 |
128.7 |
| CG |
CA |
N |
H2 |
252.3 |
322.1 |
| N |
CA |
CG |
C |
237.0 |
238.5 |
| N |
CA |
CG |
HA |
116.4 |
120.3 |
| C |
CA |
CG |
HA |
239.5 |
241.9 |
| CG |
CA |
C |
O |
269.7 |
240.5 |
| CG |
CA |
C |
OXT |
|
61.7 |
| CD1 |
CG |
CA |
CD2 |
175.6 |
179.9 |
| CA |
CG |
CD1 |
CE1 |
181.3 |
180.0 |
| CA |
CG |
CD1 |
HD1 |
1.3 |
0.1 |
| CA |
CG |
CD2 |
CE2 |
183.4 |
180.0 |
| CA |
CG |
CD2 |
HD2 |
3.4 |
360.0 |
| C |
CA |
N |
H |
247.6 |
4.6 |
| C |
CA |
N |
H2 |
127.5 |
198.0 |
| N |
CA |
C |
CG |
127.7 |
124.8 |
| N |
CA |
C |
HA |
242.7 |
245.3 |
| CG |
CA |
C |
HA |
115.0 |
120.5 |
| C |
CA |
CG |
CD1 |
217.8 |
241.8 |
| C |
CA |
CG |
CD2 |
42.2 |
61.9 |
| O |
C |
CA |
OXT |
|
178.8 |
| CA |
C |
OXT |
HXT |
|
178.8 |
| HA |
CA |
N |
H |
126.7 |
250.6 |
| HA |
CA |
N |
H2 |
6.7 |
84.0 |
| N |
CA |
HA |
CG |
237.3 |
236.3 |
| N |
CA |
HA |
C |
117.8 |
114.7 |
| CG |
CA |
HA |
C |
240.5 |
238.4 |
| HA |
CA |
CG |
CD1 |
338.3 |
359.9 |
| HA |
CA |
CG |
CD2 |
162.7 |
180.0 |
| HA |
CA |
C |
O |
154.7 |
120.0 |
| HA |
CA |
C |
OXT |
|
301.2 |
| CD1 |
CG |
CA |
C |
217.8 |
241.8 |
| CD1 |
CG |
CA |
HA |
338.3 |
359.9 |
| CA |
CG |
CD1 |
CD2 |
184.1 |
180.1 |
| CD1 |
CG |
CD2 |
CE2 |
7.4 |
0.0 |
| CD1 |
CG |
CD2 |
HD2 |
187.4 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
CZ |
357.1 |
0.0 |
| CG |
CD1 |
CE1 |
HE1 |
177.1 |
180.0 |
| CD2 |
CG |
CA |
C |
42.2 |
61.9 |
| CD2 |
CG |
CA |
HA |
162.7 |
180.0 |
| CA |
CG |
CD2 |
CD1 |
176.0 |
179.9 |
| CD2 |
CG |
CD1 |
CE1 |
357.2 |
360.0 |
| CD2 |
CG |
CD1 |
HD1 |
177.2 |
180.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
354.2 |
360.0 |
| CG |
CD2 |
CE2 |
OE3 |
169.5 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
357.2 |
360.0 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
4.6 |
360.0 |
| CD1 |
CE1 |
CZ |
OH |
179.6 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
177.2 |
180.0 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
177.1 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
357.2 |
360.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
359.3 |
0.0 |
| CZ |
CE2 |
CD2 |
OE3 |
184.7 |
180.0 |
| CD2 |
CE2 |
CZ |
OH |
184.1 |
180.0 |
| CD2 |
CE2 |
OE3 |
HE3 |
30.5 |
167.8 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
174.2 |
180.0 |
| HD2 |
CD2 |
CE2 |
OE3 |
349.4 |
360.0 |
| CZ |
CE1 |
CD1 |
HD1 |
177.1 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.3 |
0.0 |
| CE1 |
CZ |
CE2 |
OE3 |
183.6 |
180.0 |
| CE2 |
CZ |
CE1 |
OH |
185.0 |
180.0 |
| CE1 |
CZ |
OH |
HH |
196.8 |
323.5 |
| HE1 |
CE1 |
CD1 |
HD1 |
357.2 |
360.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
184.6 |
180.0 |
| HE1 |
CE1 |
CZ |
OH |
359.6 |
0.0 |
| CZ |
CE2 |
CD2 |
HD2 |
174.2 |
180.0 |
| CD2 |
CE2 |
CZ |
OE3 |
175.8 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
184.6 |
180.0 |
| CE1 |
CZ |
CE2 |
OH |
175.2 |
180.0 |
| CZ |
CE2 |
OE3 |
HE3 |
205.8 |
347.8 |
| CE2 |
CZ |
OH |
HH |
12.0 |
143.6 |
| OE3 |
CE2 |
CD2 |
HD2 |
349.4 |
360.0 |
| CD2 |
CE2 |
OE3 |
CZ |
184.7 |
180.0 |
| OE3 |
CE2 |
CZ |
OH |
8.3 |
360.0 |
| OH |
CZ |
CE1 |
HE1 |
359.6 |
0.0 |
| CE1 |
CZ |
OH |
CE2 |
184.9 |
180.0 |
| OH |
CZ |
CE2 |
OE3 |
8.3 |
360.0 |
| O |
C |
CA |
HA |
154.7 |
120.0 |
| CA |
C |
O |
OXT |
|
181.3 |
| O |
C |
OXT |
HXT |
|
359.9 |
| OXT |
C |
CA |
HA |
|
301.2 |
| CA |
C |
OXT |
O |
|
178.8 |