PDB Chemical Component NT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NT

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.367	1.304
C1	N2	1.374	1.374
C1	N3	1.362	1.374
N1	HN1	1.020	0.970
N2	HN21	1.021	0.970
N2	HN22	1.020	0.970
N3	C2	1.422	1.464
N3	HN3	1.020	0.970
C2	C3	1.531	1.507
C2	H21	1.114	1.090
C2	H22	1.115	1.090
C3	O1	1.239	1.212
C3	N4	1.395	1.348
N4	C4	1.401	1.407
N4	HN4	1.019	0.969
C4	C5	1.415	1.403
C4	C7	1.423	1.358
C5	C6	1.410	1.379
C5	H5	1.103	1.079
C6	N5	1.388	1.376
C6	C9	1.396	1.467
N5	C8	1.454	1.465
N5	C7	1.380	1.359
C8	H81	1.115	1.089
C8	H82	1.114	1.089
C8	H83	1.116	1.091
C7	H7	1.103	1.081
C9	O2	1.207	1.216
C9	N6	1.429	1.347
N6	C10	1.390	1.406
N6	HN6	1.020	0.970
C10	C11	1.400	1.401
C10	C13	1.403	1.360
C11	C12	1.419	1.379
C11	H11	1.102	1.079
C12	N7	1.348	1.377
C12	C15	1.417	1.466
N7	C14	1.432	1.465
N7	C13	1.363	1.358
C14	H141	1.114	1.090
C14	H142	1.115	1.090
C14	H143	1.115	1.090
C13	H13	1.103	1.080
C15	O3	1.234	1.217
C15	N8	1.395	1.348
N8	C16	1.467	1.465
N8	HN8	1.021	0.970
C16	C17	1.573	1.528
C16	H161	1.115	1.090
C16	H162	1.114	1.089
C17	C18	1.536	1.507
C17	H171	1.115	1.089
C17	H172	1.115	1.090
C18	N9	1.347	1.294
C18	N10	1.352	1.370
N9	HN9	1.020	0.970
N10	HN01	1.019	0.971
N10	HN02	1.020	0.970

Bond Angles for NT

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	N2	121.0	120.0
N1	C1	N3	122.2	120.0
C1	N1	HN1	119.3	120.0
N2	C1	N3	116.8	120.0
C1	N2	HN21	121.1	120.0
C1	N2	HN22	108.1	120.0
C1	N3	C2	120.8	120.0
C1	N3	HN3	108.2	120.0
HN21	N2	HN22	108.0	120.0
C2	N3	HN3	108.2	120.0
N3	C2	C3	111.8	109.5
N3	C2	H21	111.4	109.5
N3	C2	H22	111.3	109.5
C3	C2	H21	111.3	109.5
C3	C2	H22	111.3	109.5
C2	C3	O1	126.4	120.0
C2	C3	N4	112.2	120.0
H21	C2	H22	99.0	109.4
O1	C3	N4	121.4	120.0
C3	N4	C4	123.2	120.0
C3	N4	HN4	118.1	120.0
C4	N4	HN4	118.6	120.0
N4	C4	C5	121.4	126.1
N4	C4	C7	131.9	126.2
C5	C4	C7	106.5	107.7
C4	C5	C6	106.9	107.1
C4	C5	H5	126.7	126.5
C4	C7	N5	109.5	108.8
C4	C7	H7	126.5	125.6
C6	C5	H5	126.4	126.5
C5	C6	N5	109.6	107.7
C5	C6	C9	125.0	126.2
N5	C6	C9	124.5	126.1
C6	N5	C8	124.4	125.7
C6	N5	C7	107.4	108.7
C6	C9	O2	124.0	120.0
C6	C9	N6	115.5	119.9
C8	N5	C7	127.9	125.6
N5	C8	H81	124.4	109.5
N5	C8	H82	106.9	109.4
N5	C8	H83	106.9	109.4
N5	C7	H7	124.0	125.6
H81	C8	H82	106.9	109.6
H81	C8	H83	106.9	109.5
H82	C8	H83	102.7	109.4
O2	C9	N6	120.5	120.0
C9	N6	C10	122.4	120.0
C9	N6	HN6	120.3	120.1
C10	N6	HN6	117.4	120.0
N6	C10	C11	123.9	126.1
N6	C10	C13	130.0	126.1
C11	C10	C13	105.3	107.7
C10	C11	C12	106.2	107.2
C10	C11	H11	126.4	126.5
C10	C13	N7	111.4	108.7
C10	C13	H13	125.5	125.6
C12	C11	H11	127.4	126.4
C11	C12	N7	110.6	107.6
C11	C12	C15	127.1	126.2
N7	C12	C15	121.6	126.2
C12	N7	C14	125.8	125.6
C12	N7	C13	106.1	108.7
C12	C15	O3	127.7	120.0
C12	C15	N8	113.9	120.0
C14	N7	C13	127.2	125.7
N7	C14	H141	125.8	109.5
N7	C14	H142	106.5	109.5
N7	C14	H143	106.5	109.5
N7	C13	H13	123.1	125.6
H141	C14	H142	106.5	109.5
H141	C14	H143	106.4	109.4
H142	C14	H143	103.1	109.5
O3	C15	N8	118.3	119.9
C15	N8	C16	122.7	120.1
C15	N8	HN8	116.0	119.9
C16	N8	HN8	121.3	120.0
N8	C16	C17	113.5	109.5
N8	C16	H161	110.7	109.4
N8	C16	H162	110.7	109.4
C17	C16	H161	110.7	109.5
C17	C16	H162	110.7	109.5
C16	C17	C18	110.9	109.5
C16	C17	H171	111.6	109.5
C16	C17	H172	111.6	109.5
H161	C16	H162	99.6	109.5
C18	C17	H171	111.7	109.5
C18	C17	H172	111.7	109.4
C17	C18	N9	117.2	120.0
C17	C18	N10	116.8	120.0
H171	C17	H172	98.8	109.4
N9	C18	N10	126.0	120.0
C18	N9	HN9	114.8	120.0
C18	N10	HN01	116.8	120.0
C18	N10	HN02	109.5	120.1
HN01	N10	HN02	109.6	120.0

Torsion Angles for NT

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	N1	N3	179.9	180.0
N1	C1	N2	HN21	180.0	360.0
N1	C1	N2	HN22	54.7	180.0
N1	C1	N3	C2	6.4	0.0
N1	C1	N3	HN3	241.1	180.0
N1	C1	N2	N3	180.1	180.0
N2	C1	N1	HN1	24.8	0.0
N2	C1	N3	C2	186.5	180.0
N2	C1	N3	HN3	61.2	360.0
HN21	N2	C1	HN22	125.3	180.0
N1	C1	N3	N2	179.9	180.0
N3	C1	N1	HN1	204.9	180.0
N3	C1	N2	HN21	359.9	180.0
N3	C1	N2	HN22	234.7	0.0
C2	N3	C1	HN3	125.3	180.0
C1	N3	C2	C3	174.9	180.0
C1	N3	C2	H21	300.1	60.0
C1	N3	C2	H22	49.6	300.0
HN1	N1	C1	N2	24.8	0.0
HN1	N1	C1	N3	204.9	180.0
HN21	N2	C1	N3	359.9	180.0
C1	N2	HN21	HN22	234.7	180.0
HN22	N2	C1	N3	234.7	0.0
C1	N2	HN22	HN21	132.7	180.0
C1	N3	C2	HN3	234.7	180.0
C3	C2	N3	H21	234.7	120.0
C3	C2	N3	H22	125.2	240.0
N3	C2	C3	O1	7.5	359.9
N3	C2	C3	N4	187.9	180.0
H21	C2	N3	H22	250.5	119.9
C1	N3	HN3	C2	132.5	180.0
HN3	N3	C2	C3	300.2	0.0
HN3	N3	C2	H21	65.4	240.0
HN3	N3	C2	H22	174.9	120.1
C3	C2	N3	HN3	300.2	0.0
N3	C2	C3	H21	125.3	239.9
N3	C2	C3	H22	234.8	120.0
H21	C2	C3	H22	109.5	240.1
O1	C3	C2	N4	179.6	179.9
C2	C3	N4	C4	181.3	180.0
C2	C3	N4	HN4	1.3	360.0
H21	C2	N3	HN3	65.4	240.0
N3	C2	H21	C3	234.5	120.1
N3	C2	H21	H22	117.2	240.0
C3	C2	H21	H22	242.8	120.0
H21	C2	C3	O1	242.2	120.0
H21	C2	C3	N4	62.6	300.1
H22	C2	N3	HN3	174.9	120.1
N3	C2	H22	C3	125.5	240.0
N3	C2	H22	H21	242.7	120.0
C3	C2	H22	H21	117.3	240.1
H22	C2	C3	O1	132.7	239.9
H22	C2	C3	N4	313.1	60.0
O1	C3	C2	H21	242.2	120.0
O1	C3	C2	H22	132.7	239.9
C2	C3	O1	N4	180.4	180.1
O1	C3	N4	C4	1.7	0.1
O1	C3	N4	HN4	181.7	180.1
N4	C3	C2	H21	62.6	300.1
N4	C3	C2	H22	313.1	60.0
C2	C3	N4	O1	179.6	179.9
C4	N4	C3	HN4	180.0	180.0
C3	N4	C4	C5	168.6	360.0
C3	N4	C4	C7	353.0	180.0
C3	N4	C4	HN4	180.0	180.0
C5	C4	N4	C7	175.6	180.0
N4	C4	C5	C6	183.5	180.0
N4	C4	C5	H5	3.5	0.0
N4	C4	C7	N5	174.2	179.7
N4	C4	C7	H7	354.2	359.9
C3	N4	HN4	C4	180.0	180.0
HN4	N4	C4	C5	348.6	180.0
HN4	N4	C4	C7	173.0	360.0
C5	C4	N4	HN4	348.6	180.0
N4	C4	C5	C7	183.4	180.0
C5	C4	C7	N5	358.1	359.8
C5	C4	C7	H7	178.1	179.9
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	N5	1.7	0.2
C4	C5	C6	C9	192.3	180.0
C7	C4	N4	HN4	173.0	360.0
N4	C4	C7	C5	176.1	180.0
C7	C4	C5	C6	0.1	360.0
C7	C4	C5	H5	180.2	180.0
C6	N5	C7	C4	2.9	0.4
C8	N5	C7	C4	176.5	180.0
N5	C7	C4	H7	180.0	179.8
C6	C5	C4	C7	0.1	360.0
C4	C5	C6	H5	180.0	180.0
N5	C6	C5	C9	169.3	180.3
C5	C6	N5	C8	183.3	180.0
C5	C6	N5	C7	357.2	359.6
C5	C6	C9	O2	203.2	185.3
C5	C6	C9	N6	23.6	5.4
H5	C5	C4	C7	180.2	180.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	N5	181.6	180.2
H5	C5	C6	C9	12.3	360.0
C4	C7	N5	C6	2.9	0.4
N5	C6	C5	H5	181.6	180.2
C5	C6	N5	C9	190.6	179.7
N5	C6	C9	O2	35.4	5.0
N5	C6	C9	N6	215.8	185.1
C8	N5	C6	C7	186.2	180.4
C6	N5	C8	H81	180.0	265.0
C6	N5	C8	H82	305.3	25.1
C6	N5	C8	H83	54.8	145.0
C6	N5	C7	H7	183.0	180.2
C9	C6	C5	H5	12.3	360.0
C5	C6	C9	N5	167.8	180.3
C9	C6	N5	C8	352.7	0.2
C9	C6	N5	C7	166.6	179.9
O2	C9	C6	N6	179.6	180.0
C6	C9	N6	C10	180.6	185.5
C6	C9	N6	HN6	0.6	5.6
C4	C7	N5	C8	176.5	180.0
C8	N5	C6	C9	352.7	0.2
C6	N5	C8	C7	172.5	179.6
C8	N5	C7	H7	356.5	359.9
H81	C8	N5	H82	234.7	239.9
H81	C8	N5	H83	125.2	120.0
H82	C8	N5	H83	250.5	240.1
C4	C7	N5	H7	180.0	180.2
C7	N5	C6	C9	166.6	179.9
C6	N5	C7	C8	186.5	180.4
C7	N5	C8	H81	7.5	85.4
C7	N5	C8	H82	132.8	205.5
C7	N5	C8	H83	242.2	325.4
H81	C8	N5	C7	7.5	85.4
N5	C8	H81	H82	125.3	120.0
N5	C8	H81	H83	234.8	240.0
H82	C8	H81	H83	109.5	120.0
H82	C8	N5	C7	132.8	205.5
N5	C8	H82	H81	224.7	239.9
N5	C8	H82	H83	112.4	119.9
H81	C8	H82	H83	247.6	240.0
H83	C8	N5	C7	242.2	325.4
N5	C8	H83	H81	135.2	120.0
N5	C8	H83	H82	247.6	240.1
H81	C8	H83	H82	112.4	120.1
C4	C7	H7	N5	180.0	179.8
C6	C9	O2	N6	180.4	180.0
O2	C9	N6	C10	1.0	5.6
O2	C9	N6	HN6	181.0	185.6
C6	C9	N6	O2	179.6	180.0
C10	N6	C9	HN6	180.0	180.0
C9	N6	C10	C11	177.5	0.1
C9	N6	C10	C13	9.6	180.0
C9	N6	C10	HN6	180.0	180.0
C11	C10	N6	C13	167.9	180.1
N6	C10	C11	C12	190.8	179.7
N6	C10	C11	H11	10.8	359.9
N6	C10	C13	N7	164.9	180.0
N6	C10	C13	H13	344.9	0.1
C9	N6	HN6	C10	180.0	180.0
HN6	N6	C10	C11	357.5	180.0
HN6	N6	C10	C13	189.6	360.0
C11	C10	N6	HN6	357.5	180.0
N6	C10	C11	C13	189.6	179.9
C11	C10	C13	N7	355.3	360.0
C11	C10	C13	H13	175.3	180.0
C12	C11	C10	H11	180.0	179.8
C10	C11	C12	N7	2.7	0.4
C10	C11	C12	C15	173.0	180.0
C13	C10	N6	HN6	189.6	360.0
N6	C10	C13	C11	169.6	180.1
C13	C10	C11	C12	1.2	359.8
C13	C10	C11	H11	181.2	179.9
C12	N7	C13	C10	6.4	0.2
C14	N7	C13	C10	175.8	180.0
N7	C13	C10	H13	180.0	180.0
C12	C11	C10	C13	1.2	359.8
C10	C11	C12	H11	180.0	180.2
N7	C12	C11	C15	189.6	180.4
C11	C12	N7	C14	184.9	179.9
C11	C12	N7	C13	354.5	359.6
C11	C12	C15	O3	199.1	185.4
C11	C12	C15	N8	17.8	5.3
H11	C11	C10	C13	181.2	179.9
C10	C11	H11	C12	179.9	179.8
H11	C11	C12	N7	182.6	180.2
H11	C11	C12	C15	353.0	359.8
C10	C13	N7	C12	6.4	0.2
N7	C12	C11	H11	182.6	180.2
C11	C12	N7	C15	171.0	179.6
N7	C12	C15	O3	8.5	4.9
N7	C12	C15	N8	187.2	184.9
C14	N7	C12	C13	190.4	180.3
C12	N7	C14	H141	180.0	265.2
C12	N7	C14	H142	305.3	25.2
C12	N7	C14	H143	54.8	145.3
C12	N7	C13	H13	186.4	180.2
C15	C12	C11	H11	353.0	359.8
C11	C12	C15	N7	190.6	180.4
C15	C12	N7	C14	13.9	0.3
C15	C12	N7	C13	183.5	180.0
O3	C15	C12	N8	181.3	180.0
C12	C15	N8	C16	182.8	185.1
C12	C15	N8	HN8	2.9	5.1
C10	C13	N7	C14	175.8	180.0
C14	N7	C12	C15	13.9	0.3
C12	N7	C14	C13	167.5	179.7
C14	N7	C13	H13	355.8	359.9
H141	C14	N7	H142	234.7	240.0
H141	C14	N7	H143	125.2	119.9
H142	C14	N7	H143	250.5	239.9
C10	C13	N7	H13	180.0	180.0
C13	N7	C12	C15	183.5	180.0
C12	N7	C13	C14	190.6	180.3
C13	N7	C14	H141	12.5	85.5
C13	N7	C14	H142	137.8	205.5
C13	N7	C14	H143	247.3	325.6
H141	C14	N7	C13	12.5	85.5
N7	C14	H141	H142	125.3	120.0
N7	C14	H141	H143	234.8	240.1
H142	C14	H141	H143	109.5	120.0
H142	C14	N7	C13	137.8	205.5
N7	C14	H142	H141	223.7	240.0
N7	C14	H142	H143	111.9	120.0
H141	C14	H142	H143	248.2	240.1
H143	C14	N7	C13	247.3	325.6
N7	C14	H143	H141	136.3	120.0
N7	C14	H143	H142	248.1	239.9
H141	C14	H143	H142	111.9	120.0
C10	C13	H13	N7	180.0	179.9
C12	C15	O3	N8	178.6	180.0
O3	C15	N8	C16	1.6	5.0
O3	C15	N8	HN8	181.7	185.0
C12	C15	N8	O3	181.2	180.0
C16	N8	C15	HN8	180.0	180.0
C15	N8	C16	C17	88.6	180.0
C15	N8	C16	H161	213.8	300.1
C15	N8	C16	H162	323.3	60.0
C15	N8	C16	HN8	180.0	180.0
C17	C16	N8	H161	234.8	240.0
C17	C16	N8	H162	125.3	120.0
N8	C16	C17	C18	190.5	180.0
N8	C16	C17	H171	315.7	300.0
N8	C16	C17	H172	65.2	60.0
H161	C16	N8	H162	250.5	240.1
C15	N8	HN8	C16	180.0	180.0
HN8	N8	C16	C17	268.6	0.0
HN8	N8	C16	H161	33.8	120.1
HN8	N8	C16	H162	143.3	240.0
C17	C16	N8	HN8	268.6	0.0
N8	C16	C17	H161	125.2	120.0
N8	C16	C17	H162	234.8	240.0
H161	C16	C17	H162	109.6	120.0
C18	C17	C16	H171	234.8	240.0
C18	C17	C16	H172	125.3	120.0
C16	C17	C18	N9	85.8	0.0
C16	C17	C18	N10	266.7	180.0
H171	C17	C16	H172	250.5	240.0
H161	C16	N8	HN8	33.8	120.1
N8	C16	H161	C17	233.2	240.0
N8	C16	H161	H162	116.6	119.9
C17	C16	H161	H162	243.4	239.9
H161	C16	C17	C18	65.3	60.0
H161	C16	C17	H171	190.5	180.1
H161	C16	C17	H172	300.0	300.1
H162	C16	N8	HN8	143.3	240.0
N8	C16	H162	C17	126.8	120.0
N8	C16	H162	H161	243.4	240.1
C17	C16	H162	H161	116.6	120.1
H162	C16	C17	C18	315.7	300.0
H162	C16	C17	H171	81.0	60.0
H162	C16	C17	H172	190.5	180.0
C18	C17	C16	H161	65.3	60.0
C18	C17	C16	H162	315.7	300.0
C16	C17	C18	H171	125.2	120.1
C16	C17	C18	H172	234.8	240.0
H171	C17	C18	H172	109.6	119.9
N9	C18	C17	N10	179.1	180.0
C17	C18	N9	HN9	120.1	180.0
C17	C18	N10	HN01	180.0	180.0
C17	C18	N10	HN02	54.7	0.0
H171	C17	C16	H161	190.5	180.1
H171	C17	C16	H162	81.0	60.0
C16	C17	H171	C18	235.2	239.9
C16	C17	H171	H172	117.5	120.0
C18	C17	H171	H172	242.3	240.1
H171	C17	C18	N9	320.6	239.9
H171	C17	C18	N10	141.5	59.9
H172	C17	C16	H161	300.0	300.1
H172	C17	C16	H162	190.5	180.0
C16	C17	H172	C18	124.8	120.0
C16	C17	H172	H171	242.5	240.0
C18	C17	H172	H171	117.6	119.9
H172	C17	C18	N9	211.1	120.0
H172	C17	C18	N10	31.9	300.0
N9	C18	C17	H171	320.6	239.9
N9	C18	C17	H172	211.1	120.0
C17	C18	N9	N10	181.0	180.0
N9	C18	N10	HN01	1.0	360.0
N9	C18	N10	HN02	235.7	180.0
N10	C18	C17	H171	141.5	59.9
N10	C18	C17	H172	31.9	300.0
C17	C18	N10	N9	179.0	180.0
N10	C18	N9	HN9	299.1	0.0
HN01	N10	C18	HN02	125.3	180.0
HN9	N9	C18	N10	299.1	0.0
C18	N10	HN01	HN02	234.7	180.0
C18	N10	HN02	HN01	129.4	180.0