PDB Chemical Component NS9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NS9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C9 |
1.339 |
1.313 |
| N1 |
N2 |
1.267 |
1.400 |
| N2 |
C3 |
1.381 |
1.372 |
| N2 |
C7 |
1.437 |
1.370 |
| N10 |
C3 |
1.357 |
1.379 |
| C3 |
C4 |
1.413 |
1.365 |
| C4 |
C5 |
1.447 |
1.404 |
| C4 |
H4 |
1.080 |
1.080 |
| N6 |
C5 |
1.379 |
1.322 |
| C5 |
N18 |
1.350 |
1.385 |
| C7 |
N6 |
1.376 |
1.341 |
| C8 |
C7 |
1.400 |
1.387 |
| C9 |
C8 |
1.346 |
1.389 |
| C8 |
C26 |
1.509 |
1.508 |
| C9 |
H9 |
1.080 |
1.080 |
| N10 |
C11 |
1.500 |
1.465 |
| N10 |
HN10 |
1.000 |
0.970 |
| C12 |
C11 |
1.514 |
1.507 |
| C11 |
H11 |
1.100 |
1.090 |
| C11 |
H11A |
1.100 |
1.090 |
| C13 |
C12 |
1.401 |
1.383 |
| C12 |
C17 |
1.386 |
1.383 |
| C14 |
C13 |
1.390 |
1.382 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.411 |
1.382 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C16 |
1.374 |
1.382 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
C17 |
1.401 |
1.382 |
| C16 |
H16 |
1.080 |
1.081 |
| C17 |
H17 |
1.080 |
1.080 |
| N18 |
C19 |
1.507 |
1.465 |
| N18 |
HN18 |
1.000 |
0.970 |
| C23 |
C19 |
1.565 |
1.531 |
| C19 |
C20 |
1.515 |
1.530 |
| C19 |
H19 |
1.100 |
1.089 |
| C20 |
O25 |
1.475 |
1.429 |
| C20 |
C21 |
1.573 |
1.530 |
| C20 |
H20 |
1.100 |
1.090 |
| O22 |
C21 |
1.399 |
1.429 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.090 |
| O22 |
HO22 |
0.950 |
0.967 |
| C23 |
O24 |
1.450 |
1.429 |
| C23 |
H23 |
1.100 |
1.090 |
| C23 |
H23A |
1.100 |
1.090 |
| O24 |
HO24 |
0.950 |
0.967 |
| O25 |
HO25 |
0.950 |
0.967 |
| C28 |
C26 |
1.572 |
1.530 |
| C26 |
C27 |
1.552 |
1.530 |
| C26 |
H26 |
1.100 |
1.091 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| C27 |
H27B |
1.100 |
1.090 |
| C28 |
H28 |
1.100 |
1.090 |
| C28 |
H28A |
1.101 |
1.091 |
| C28 |
H28B |
1.100 |
1.090 |
Bond Angles for NS9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
C9 |
109.4 |
108.8 |
| N1 |
C9 |
C8 |
109.3 |
108.9 |
| N1 |
C9 |
H9 |
125.4 |
125.5 |
| N1 |
N2 |
C3 |
130.0 |
132.4 |
| N1 |
N2 |
C7 |
110.9 |
107.7 |
| C3 |
N2 |
C7 |
119.0 |
119.9 |
| N2 |
C3 |
C4 |
118.1 |
119.1 |
| N2 |
C7 |
N6 |
124.3 |
120.6 |
| C3 |
C4 |
C5 |
120.8 |
119.3 |
| C3 |
C4 |
H4 |
119.6 |
120.3 |
| C5 |
C4 |
H4 |
119.6 |
120.4 |
| C4 |
C5 |
N18 |
117.5 |
119.9 |
| N6 |
C5 |
N18 |
121.3 |
119.9 |
| C5 |
N18 |
C19 |
120.6 |
120.0 |
| C5 |
N18 |
HN18 |
105.9 |
120.0 |
| C9 |
C8 |
C26 |
125.4 |
126.1 |
| C8 |
C26 |
C27 |
109.7 |
109.5 |
| C8 |
C26 |
H26 |
105.2 |
109.4 |
| C11 |
N10 |
HN10 |
105.5 |
120.0 |
| N10 |
C11 |
H11 |
109.6 |
109.5 |
| N10 |
C11 |
H11A |
109.5 |
109.5 |
| C12 |
C11 |
H11 |
109.6 |
109.4 |
| C12 |
C11 |
H11A |
109.6 |
109.5 |
| H11 |
C11 |
H11A |
109.4 |
109.5 |
| C13 |
C12 |
C17 |
120.7 |
120.0 |
| C12 |
C17 |
C16 |
117.4 |
120.0 |
| C12 |
C17 |
H17 |
121.3 |
120.0 |
| C14 |
C13 |
H13 |
119.6 |
120.1 |
| C15 |
C14 |
H14 |
120.3 |
120.0 |
| C14 |
C15 |
C16 |
118.4 |
120.0 |
| C14 |
C15 |
H15 |
120.8 |
120.0 |
| C16 |
C15 |
H15 |
120.8 |
120.1 |
| C15 |
C16 |
C17 |
123.4 |
120.1 |
| C15 |
C16 |
H16 |
118.3 |
120.0 |
| C17 |
C16 |
H16 |
118.3 |
120.0 |
| C16 |
C17 |
H17 |
121.3 |
120.1 |
| C19 |
N18 |
HN18 |
105.9 |
120.0 |
| N18 |
C19 |
C20 |
113.3 |
109.4 |
| N18 |
C19 |
H19 |
108.0 |
109.5 |
| C23 |
C19 |
H19 |
112.5 |
109.5 |
| C20 |
C19 |
H19 |
106.7 |
109.5 |
| C19 |
C20 |
O25 |
106.6 |
109.5 |
| C19 |
C20 |
C21 |
115.1 |
109.5 |
| C19 |
C20 |
H20 |
108.1 |
109.5 |
| C21 |
C20 |
O25 |
110.8 |
109.5 |
| O25 |
C20 |
H20 |
112.6 |
109.4 |
| C20 |
O25 |
HO25 |
109.5 |
114.0 |
| C21 |
C20 |
H20 |
103.7 |
109.5 |
| C20 |
C21 |
H21 |
111.0 |
109.5 |
| C20 |
C21 |
H21A |
111.0 |
109.4 |
| O22 |
C21 |
H21 |
111.0 |
109.5 |
| O22 |
C21 |
H21A |
111.0 |
109.5 |
| H21 |
C21 |
H21A |
107.9 |
109.5 |
| O24 |
C23 |
H23 |
109.0 |
109.5 |
| O24 |
C23 |
H23A |
109.0 |
109.5 |
| C23 |
O24 |
HO24 |
109.5 |
114.0 |
| H23 |
C23 |
H23A |
109.9 |
109.5 |
| C28 |
C26 |
H26 |
107.9 |
109.5 |
| C27 |
C26 |
H26 |
112.7 |
109.5 |
| C26 |
C27 |
H27 |
109.5 |
109.5 |
| C26 |
C27 |
H27A |
109.5 |
109.4 |
| C26 |
C27 |
H27B |
109.5 |
109.4 |
| H27 |
C27 |
H27A |
109.4 |
109.5 |
| H27 |
C27 |
H27B |
109.5 |
109.5 |
| H27A |
C27 |
H27B |
109.5 |
109.5 |
| H28 |
C28 |
H28A |
109.5 |
109.4 |
| H28 |
C28 |
H28B |
109.4 |
109.5 |
| H28A |
C28 |
H28B |
109.5 |
109.5 |
Torsion Angles for NS9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
N1 |
N2 |
C3 |
181.6 |
180.0 |
| C9 |
N1 |
N2 |
C7 |
356.4 |
360.0 |
| N1 |
C9 |
C8 |
C26 |
178.3 |
180.0 |
| N2 |
N1 |
C9 |
C8 |
2.2 |
360.0 |
| N2 |
N1 |
C9 |
H9 |
182.3 |
179.9 |
| C3 |
N2 |
N1 |
C7 |
185.2 |
180.0 |
| N1 |
N2 |
C3 |
C4 |
174.6 |
180.0 |
| N1 |
N2 |
C7 |
N6 |
183.6 |
179.9 |
| C3 |
N2 |
N1 |
C9 |
181.6 |
180.0 |
| N1 |
N2 |
C3 |
C7 |
174.4 |
180.0 |
| C3 |
N2 |
C7 |
N6 |
359.0 |
360.0 |
| N2 |
C3 |
C4 |
C5 |
2.4 |
0.0 |
| N2 |
C3 |
C4 |
H4 |
182.4 |
180.0 |
| C7 |
N2 |
N1 |
C9 |
356.4 |
360.0 |
| N1 |
N2 |
C7 |
C3 |
184.6 |
180.0 |
| C7 |
N2 |
C3 |
C4 |
0.2 |
360.0 |
| N10 |
C3 |
C4 |
H4 |
0.3 |
0.1 |
| C4 |
C3 |
N2 |
C7 |
0.2 |
360.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
N18 |
180.1 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| N6 |
C5 |
C4 |
N18 |
175.4 |
180.0 |
| C4 |
C5 |
N18 |
C19 |
187.5 |
180.0 |
| C4 |
C5 |
N18 |
HN18 |
307.5 |
359.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
N18 |
0.1 |
360.0 |
| N2 |
C7 |
N6 |
C5 |
359.1 |
0.1 |
| N6 |
C5 |
C4 |
H4 |
175.6 |
180.0 |
| C4 |
C5 |
N6 |
N18 |
184.8 |
180.0 |
| N6 |
C5 |
N18 |
C19 |
12.1 |
360.0 |
| N6 |
C5 |
N18 |
HN18 |
132.2 |
179.9 |
| N18 |
C5 |
C4 |
H4 |
0.1 |
360.0 |
| C19 |
N18 |
C5 |
HN18 |
240.0 |
180.1 |
| C5 |
N18 |
C19 |
C20 |
259.8 |
205.0 |
| C5 |
N18 |
C19 |
H19 |
17.8 |
325.0 |
| C7 |
N6 |
C5 |
N18 |
178.8 |
179.9 |
| N1 |
C9 |
C8 |
C7 |
0.1 |
0.0 |
| N1 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C9 |
C8 |
C26 |
C27 |
254.1 |
300.0 |
| C9 |
C8 |
C26 |
H26 |
15.6 |
180.0 |
| C28 |
C26 |
C8 |
H26 |
118.2 |
240.0 |
| C27 |
C26 |
C8 |
H26 |
238.5 |
120.0 |
| C8 |
C26 |
C27 |
H27 |
180.0 |
60.0 |
| C8 |
C26 |
C27 |
H27A |
300.0 |
180.0 |
| C8 |
C26 |
C27 |
H27B |
60.0 |
300.0 |
| N1 |
C9 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
C26 |
358.3 |
0.0 |
| C12 |
C11 |
N10 |
H11 |
240.0 |
240.0 |
| C12 |
C11 |
N10 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
N10 |
H11A |
240.0 |
240.0 |
| HN10 |
N10 |
C11 |
H11 |
90.4 |
120.0 |
| HN10 |
N10 |
C11 |
H11A |
210.4 |
240.0 |
| C12 |
C11 |
N10 |
HN10 |
330.4 |
360.0 |
| N10 |
C11 |
C12 |
H11 |
120.0 |
120.0 |
| N10 |
C11 |
C12 |
H11A |
240.0 |
240.0 |
| H11 |
C11 |
C12 |
H11A |
120.0 |
120.0 |
| H11 |
C11 |
N10 |
HN10 |
90.4 |
120.0 |
| N10 |
C11 |
H11 |
H11A |
120.1 |
120.1 |
| C12 |
C11 |
H11 |
H11A |
239.9 |
240.0 |
| H11A |
C11 |
N10 |
HN10 |
210.4 |
240.0 |
| N10 |
C11 |
H11A |
H11 |
239.9 |
240.0 |
| C12 |
C11 |
H11A |
H11 |
120.1 |
120.0 |
| C13 |
C12 |
C11 |
H11 |
296.2 |
150.3 |
| C13 |
C12 |
C11 |
H11A |
176.2 |
30.3 |
| C13 |
C12 |
C17 |
C16 |
0.1 |
359.4 |
| C13 |
C12 |
C17 |
H17 |
180.1 |
179.7 |
| C17 |
C12 |
C11 |
H11 |
115.8 |
330.0 |
| C17 |
C12 |
C11 |
H11A |
355.8 |
210.0 |
| C15 |
C16 |
C17 |
C12 |
359.0 |
0.5 |
| C12 |
C17 |
C16 |
H16 |
179.0 |
180.3 |
| C16 |
C17 |
C12 |
H17 |
180.0 |
179.7 |
| C14 |
C13 |
C12 |
C17 |
0.4 |
0.3 |
| H13 |
C13 |
C12 |
C17 |
180.4 |
180.3 |
| C15 |
C14 |
C13 |
H13 |
179.9 |
180.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.1 |
| C14 |
C15 |
C16 |
C17 |
1.3 |
359.8 |
| C14 |
C15 |
C16 |
H16 |
181.3 |
180.0 |
| H14 |
C14 |
C13 |
H13 |
359.9 |
360.0 |
| H14 |
C14 |
C15 |
C16 |
179.3 |
180.0 |
| H14 |
C14 |
C15 |
H15 |
359.3 |
360.0 |
| C12 |
C17 |
C16 |
C15 |
359.0 |
0.5 |
| C16 |
C15 |
C14 |
H14 |
179.3 |
180.0 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
179.9 |
| C17 |
C16 |
C15 |
H16 |
180.0 |
179.8 |
| C15 |
C16 |
C17 |
H17 |
179.0 |
180.2 |
| H15 |
C15 |
C14 |
H14 |
359.3 |
360.0 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
180.1 |
| H15 |
C15 |
C16 |
C17 |
181.3 |
179.8 |
| H15 |
C15 |
C16 |
H16 |
1.3 |
0.0 |
| C12 |
C17 |
C16 |
H17 |
180.0 |
180.3 |
| C17 |
C16 |
C15 |
H15 |
181.3 |
179.8 |
| C15 |
C16 |
C17 |
H16 |
180.0 |
180.2 |
| H16 |
C16 |
C15 |
H15 |
1.3 |
0.0 |
| C15 |
C16 |
H16 |
C17 |
180.0 |
179.8 |
| H16 |
C16 |
C17 |
H17 |
359.0 |
360.0 |
| C12 |
C17 |
H17 |
C16 |
180.0 |
179.7 |
| H17 |
C17 |
C16 |
H16 |
359.0 |
360.0 |
| C5 |
N18 |
C19 |
HN18 |
120.0 |
179.9 |
| C23 |
C19 |
N18 |
H19 |
121.7 |
120.0 |
| C20 |
C19 |
N18 |
H19 |
242.0 |
240.0 |
| N18 |
C19 |
C20 |
O25 |
179.9 |
182.1 |
| N18 |
C19 |
C20 |
C21 |
56.5 |
62.1 |
| N18 |
C19 |
C20 |
H20 |
301.2 |
302.1 |
| C5 |
N18 |
HN18 |
C19 |
230.8 |
180.1 |
| HN18 |
N18 |
C19 |
C20 |
139.8 |
25.0 |
| HN18 |
N18 |
C19 |
H19 |
257.8 |
145.0 |
| C23 |
C19 |
N18 |
HN18 |
19.5 |
265.1 |
| N18 |
C19 |
C23 |
H19 |
241.2 |
240.0 |
| C20 |
C19 |
C23 |
H19 |
118.1 |
120.0 |
| C23 |
C19 |
C20 |
O25 |
299.5 |
302.1 |
| C23 |
C19 |
C20 |
H20 |
60.8 |
62.0 |
| C20 |
C19 |
N18 |
HN18 |
139.8 |
25.0 |
| N18 |
C19 |
C20 |
H19 |
118.7 |
120.0 |
| C23 |
C19 |
C20 |
H19 |
238.3 |
240.0 |
| C21 |
C20 |
C19 |
O25 |
236.6 |
240.0 |
| O25 |
C20 |
C19 |
H20 |
238.7 |
240.0 |
| C19 |
C20 |
O25 |
HO25 |
180.0 |
298.4 |
| C21 |
C20 |
C19 |
H20 |
115.3 |
120.0 |
| C19 |
C20 |
C21 |
H21 |
179.6 |
305.0 |
| C19 |
C20 |
C21 |
H21A |
299.6 |
65.0 |
| H19 |
C19 |
N18 |
HN18 |
257.8 |
145.0 |
| N18 |
C19 |
H19 |
C20 |
237.9 |
240.0 |
| H19 |
C19 |
C20 |
O25 |
61.2 |
62.1 |
| H19 |
C19 |
C20 |
C21 |
297.8 |
302.1 |
| H19 |
C19 |
C20 |
H20 |
182.5 |
182.1 |
| O25 |
C20 |
C19 |
H19 |
61.2 |
62.1 |
| C19 |
C20 |
O25 |
C21 |
234.0 |
240.0 |
| C19 |
C20 |
O25 |
H20 |
118.4 |
120.0 |
| C21 |
C20 |
O25 |
H20 |
244.4 |
240.0 |
| O25 |
C20 |
C21 |
H21 |
58.5 |
185.0 |
| O25 |
C20 |
C21 |
H21A |
178.5 |
305.0 |
| C21 |
C20 |
C19 |
H19 |
297.8 |
302.1 |
| C19 |
C20 |
C21 |
O25 |
121.1 |
120.0 |
| C19 |
C20 |
C21 |
H20 |
242.2 |
240.0 |
| O25 |
C20 |
C21 |
H20 |
121.0 |
120.0 |
| C21 |
C20 |
O25 |
HO25 |
306.0 |
58.4 |
| O22 |
C21 |
C20 |
H21 |
240.0 |
240.0 |
| O22 |
C21 |
C20 |
H21A |
120.0 |
119.9 |
| H21 |
C21 |
C20 |
H21A |
240.0 |
239.9 |
| H20 |
C20 |
C19 |
H19 |
182.5 |
182.1 |
| C19 |
C20 |
H20 |
O25 |
242.5 |
240.0 |
| C19 |
C20 |
H20 |
C21 |
122.6 |
120.0 |
| C21 |
C20 |
H20 |
O25 |
119.8 |
120.0 |
| H20 |
C20 |
O25 |
HO25 |
61.6 |
178.5 |
| H20 |
C20 |
C21 |
H21 |
297.5 |
65.0 |
| H20 |
C20 |
C21 |
H21A |
57.5 |
185.0 |
| O22 |
C21 |
C20 |
O25 |
298.5 |
65.0 |
| O22 |
C21 |
C20 |
H20 |
177.5 |
305.0 |
| C20 |
C21 |
O22 |
H21 |
120.0 |
120.0 |
| C20 |
C21 |
O22 |
H21A |
240.0 |
240.1 |
| H21 |
C21 |
O22 |
H21A |
120.0 |
120.1 |
| H21 |
C21 |
C20 |
O25 |
58.5 |
185.0 |
| H21 |
C21 |
C20 |
H20 |
297.5 |
65.0 |
| C20 |
C21 |
H21 |
H21A |
121.9 |
120.0 |
| O22 |
C21 |
H21 |
H21A |
238.1 |
240.0 |
| H21A |
C21 |
C20 |
O25 |
178.5 |
305.0 |
| H21A |
C21 |
C20 |
H20 |
57.5 |
185.0 |
| C20 |
C21 |
H21A |
H21 |
238.1 |
240.0 |
| O22 |
C21 |
H21A |
H21 |
121.9 |
120.0 |
| HO22 |
O22 |
C21 |
H21 |
60.0 |
60.0 |
| HO22 |
O22 |
C21 |
H21A |
300.0 |
299.9 |
| O24 |
C23 |
C19 |
H19 |
156.3 |
184.4 |
| H23 |
C23 |
O24 |
H23A |
120.0 |
120.1 |
| H23 |
C23 |
C19 |
H19 |
276.4 |
304.4 |
| O24 |
C23 |
H23 |
H23A |
240.6 |
239.9 |
| H23 |
C23 |
O24 |
HO24 |
60.0 |
60.1 |
| H23A |
C23 |
C19 |
H19 |
36.3 |
64.4 |
| O24 |
C23 |
H23A |
H23 |
119.4 |
120.1 |
| H23A |
C23 |
O24 |
HO24 |
300.0 |
300.0 |
| HO24 |
O24 |
C23 |
H23 |
60.0 |
60.1 |
| HO24 |
O24 |
C23 |
H23A |
300.0 |
300.0 |
| HO25 |
O25 |
C20 |
H20 |
61.6 |
178.5 |
| C8 |
C26 |
C28 |
H26 |
243.3 |
119.9 |
| C27 |
C26 |
C28 |
H26 |
121.6 |
240.0 |
| C28 |
C26 |
C27 |
H27 |
304.6 |
300.0 |
| C28 |
C26 |
C27 |
H27A |
64.6 |
60.0 |
| C28 |
C26 |
C27 |
H27B |
184.6 |
180.0 |
| C8 |
C26 |
C27 |
H26 |
116.9 |
240.1 |
| C28 |
C26 |
C27 |
H26 |
241.5 |
120.0 |
| H27 |
C27 |
C26 |
H27A |
240.0 |
240.0 |
| H27 |
C27 |
C26 |
H27B |
120.0 |
120.0 |
| H27A |
C27 |
C26 |
H27B |
240.0 |
240.0 |
| C8 |
C26 |
H26 |
C27 |
240.5 |
120.0 |
| H26 |
C26 |
C27 |
H27 |
63.2 |
180.0 |
| H26 |
C26 |
C27 |
H27A |
183.1 |
300.0 |
| H26 |
C26 |
C27 |
H27B |
303.1 |
59.9 |
| H27 |
C27 |
C26 |
H26 |
63.2 |
180.0 |
| C26 |
C27 |
H27 |
H27A |
120.0 |
120.0 |
| C26 |
C27 |
H27 |
H27B |
240.0 |
240.0 |
| H27A |
C27 |
H27 |
H27B |
120.0 |
120.0 |
| H27A |
C27 |
C26 |
H26 |
183.1 |
300.0 |
| C26 |
C27 |
H27A |
H27 |
240.0 |
240.0 |
| C26 |
C27 |
H27A |
H27B |
120.0 |
119.9 |
| H27 |
C27 |
H27A |
H27B |
240.0 |
239.9 |
| H27B |
C27 |
C26 |
H26 |
303.1 |
59.9 |
| C26 |
C27 |
H27B |
H27 |
120.0 |
120.0 |
| C26 |
C27 |
H27B |
H27A |
240.0 |
240.1 |
| H27 |
C27 |
H27B |
H27A |
120.0 |
120.1 |
| H28 |
C28 |
C26 |
H26 |
296.6 |
60.1 |
| H28A |
C28 |
H28 |
H28B |
120.0 |
120.0 |
| H28A |
C28 |
C26 |
H26 |
56.7 |
180.0 |
| H28 |
C28 |
H28A |
H28B |
240.0 |
240.0 |
| H28B |
C28 |
C26 |
H26 |
176.7 |
300.1 |
| H28 |
C28 |
H28B |
H28A |
120.0 |
120.0 |