PDB Chemical Component NRG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NRG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.479 1.469
N H 1.000 1.009
N H2 1.000 1.009
CA CB 1.558 1.530
CA C 1.525 1.507
CA HA 1.100 1.090
CB CG 1.540 1.530
CB HCB1 1.100 1.089
CB HCB2 1.100 1.090
CG CD 1.545 1.530
CG HCG1 1.100 1.089
CG HCG2 1.100 1.090
CD NE 1.476 1.465
CD HCD1 1.100 1.089
CD HCD2 1.100 1.091
NE CZ 1.316 1.375
NE HNE 1.000 0.970
CZ NH1 1.348 1.375
CZ NH2 1.330 1.303
NH1 N1 1.450 1.401
NH1 HNH1 1.000 0.970
NH2 HNH2 1.000 0.970
C O 1.240 1.342
C OXT 1.245 1.209
OXT HXT 0.950  
N1 O2 1.211 1.219
N1 O3 1.234 1.218

Bond Angles for NRG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 109.5 106.7
CA N H2 109.5 106.7
N CA CB 109.1 109.5
N CA C 111.5 109.5
N CA HA 108.5 109.5
H N H2 109.5 106.7
CB CA C 110.0 109.4
CB CA HA 110.0 109.4
CA CB CG 112.7 109.4
CA CB HCB1 108.4 109.5
CA CB HCB2 107.7 109.5
C CA HA 107.7 109.5
CA C O 117.5 120.0
CA C OXT 118.0 120.0
CG CB HCB1 108.4 109.4
CG CB HCB2 107.7 109.5
CB CG CD 110.0 109.5
CB CG HCG1 109.3 109.5
CB CG HCG2 109.2 109.5
HCB1 CB HCB2 112.0 109.5
CD CG HCG1 109.3 109.5
CD CG HCG2 109.2 109.4
CG CD NE 113.5 109.5
CG CD HCD1 108.2 109.5
CG CD HCD2 107.2 109.5
HCG1 CG HCG2 109.9 109.5
NE CD HCD1 108.2 109.4
NE CD HCD2 107.3 109.4
CD NE CZ 125.1 120.1
CD NE HNE 117.5 120.0
HCD1 CD HCD2 112.6 109.4
CZ NE HNE 117.5 120.0
NE CZ NH1 119.8 120.0
NE CZ NH2 118.5 120.0
NH1 CZ NH2 121.7 120.0
CZ NH1 N1 126.8 120.0
CZ NH1 HNH1 116.6 120.0
CZ NH2 HNH2 110.5 120.0
N1 NH1 HNH1 116.6 120.0
NH1 N1 O2 119.0 120.0
NH1 N1 O3 121.0 120.0
O C OXT 124.5 120.0
C OXT HXT 109.5  
O2 N1 O3 119.8 120.0

Torsion Angles for NRG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 240.0 246.2
CB CA N C 238.3 240.1
CB CA N HA 119.9 120.0
N CA CB CG 304.7 295.0
N CA CB HCB1 64.7 54.9
N CA CB HCB2 186.1 175.0
C CA N HA 241.6 239.9
N CA C O 179.8 160.0
N CA C OXT 359.5 340.1
CA N H H2 120.0 113.8
H N CA CB 9.7 186.2
H N CA C 131.4 306.2
H N CA HA 249.8 66.2
CA N H2 H 240.0 246.2
H2 N CA CB 129.7 300.0
H2 N CA C 251.4 59.9
H2 N CA HA 9.8 180.0
CB CA N H 9.7 186.2
CB CA N H2 129.7 300.0
N CA CB C 122.6 120.0
N CA CB HA 241.0 239.9
C CA CB HA 118.4 120.0
CB CA C O 301.0 280.0
CB CA C OXT 120.8 100.0
CG CB CA HCB1 240.0 240.1
CG CB CA HCB2 118.6 120.0
CA CB CG CD 160.4 180.0
CA CB CG HCG1 280.4 300.0
CA CB CG HCG2 40.7 60.0
HCB1 CB CA HCB2 238.6 239.9
C CA N H 131.4 306.2
C CA N H2 251.4 59.9
N CA C CB 238.8 240.0
N CA C HA 118.9 120.1
CB CA C HA 240.1 240.1
C CA CB CG 182.1 175.0
C CA CB HCB1 302.1 294.9
C CA CB HCB2 63.5 55.0
O C CA OXT 180.3 179.9
CA C OXT HXT 180.3  
HA CA N H 249.8 66.2
HA CA N H2 9.8 180.0
N CA HA CB 119.4 120.0
N CA HA C 239.2 239.9
CB CA HA C 119.8 119.9
HA CA CB CG 63.7 55.0
HA CA CB HCB1 183.7 175.0
HA CA CB HCB2 305.1 295.1
HA CA C O 60.9 39.9
HA CA C OXT 240.6 220.0
CG CB CA C 182.1 175.0
CG CB CA HA 63.7 55.0
CA CB CG HCB1 120.0 120.0
CA CB CG HCB2 241.4 240.0
HCB1 CB CG HCB2 121.4 120.0
CD CG CB HCG1 240.0 240.0
CD CG CB HCG2 119.8 119.9
CB CG CD NE 314.3 180.0
CB CG CD HCD1 74.3 300.0
CB CG CD HCD2 196.0 60.0
HCG1 CG CB HCG2 239.8 240.0
HCB1 CB CA C 302.1 294.9
HCB1 CB CA HA 183.7 175.0
CA CB HCB1 CG 237.3 240.1
CA CB HCB1 HCB2 118.6 120.1
CG CB HCB1 HCB2 241.3 240.0
HCB1 CB CG CD 40.5 60.0
HCB1 CB CG HCG1 160.5 180.0
HCB1 CB CG HCG2 280.7 300.0
HCB2 CB CA C 63.5 55.0
HCB2 CB CA HA 305.1 295.1
CA CB HCB2 CG 121.8 120.0
CA CB HCB2 HCB1 240.9 239.9
CG CB HCB2 HCB1 119.1 120.0
HCB2 CB CG CD 279.0 300.0
HCB2 CB CG HCG1 39.0 60.0
HCB2 CB CG HCG2 159.3 180.0
CD CG CB HCB1 40.5 60.0
CD CG CB HCB2 279.0 300.0
CB CG CD HCG1 120.0 120.0
CB CG CD HCG2 240.2 240.0
HCG1 CG CD HCG2 120.2 120.0
NE CD CG HCD1 240.0 240.0
NE CD CG HCD2 118.3 120.0
CG CD NE CZ 156.6 180.0
CG CD NE HNE 336.6 0.0
HCD1 CD CG HCD2 238.3 240.0
HCG1 CG CB HCB1 160.5 180.0
HCG1 CG CB HCB2 39.0 60.0
CB CG HCG1 CD 239.6 240.0
CB CG HCG1 HCG2 119.8 120.0
CD CG HCG1 HCG2 240.2 240.1
HCG1 CG CD NE 194.3 60.0
HCG1 CG CD HCD1 314.3 180.0
HCG1 CG CD HCD2 76.0 300.0
HCG2 CG CB HCB1 280.7 300.0
HCG2 CG CB HCB2 159.3 180.0
CB CG HCG2 CD 120.3 120.0
CB CG HCG2 HCG1 240.1 239.9
CD CG HCG2 HCG1 119.8 120.0
HCG2 CG CD NE 74.0 300.0
HCG2 CG CD HCD1 194.1 60.0
HCG2 CG CD HCD2 315.8 180.0
NE CD CG HCG1 194.3 60.0
NE CD CG HCG2 74.0 300.0
CG CD NE HCD1 120.0 120.1
CG CD NE HCD2 241.8 240.0
HCD1 CD NE HCD2 121.7 119.9
CZ NE CD HNE 180.0 180.0
CD NE CZ NH1 357.1 180.0
CD NE CZ NH2 176.2 0.0
HCD1 CD CG HCG1 314.3 180.0
HCD1 CD CG HCG2 194.1 60.0
CG CD HCD1 NE 236.7 239.9
CG CD HCD1 HCD2 118.3 120.0
NE CD HCD1 HCD2 241.6 240.1
HCD1 CD NE CZ 36.6 59.9
HCD1 CD NE HNE 216.6 240.0
HCD2 CD CG HCG1 76.0 300.0
HCD2 CD CG HCG2 315.8 180.0
CG CD HCD2 NE 122.2 120.0
CG CD HCD2 HCD1 241.1 239.9
NE CD HCD2 HCD1 118.9 119.9
HCD2 CD NE CZ 274.9 300.0
HCD2 CD NE HNE 94.9 120.0
CZ NE CD HCD1 36.6 59.9
CZ NE CD HCD2 274.9 300.0
CD NE CZ HNE 180.0 180.0
NH1 CZ NE NH2 180.9 180.0
NE CZ NH1 N1 188.5 186.1
NE CZ NH1 HNH1 8.5 6.1
NE CZ NH2 HNH2 0.4 186.6
HNE NE CD HCD1 216.6 240.0
HNE NE CD HCD2 94.9 120.0
CD NE HNE CZ 180.0 180.0
HNE NE CZ NH1 177.1 360.0
HNE NE CZ NH2 356.2 180.0
NH1 CZ NE HNE 177.1 360.0
NE CZ NH1 NH2 179.0 180.0
NH1 CZ NH2 HNH2 179.5 6.6
N1 NH1 CZ HNH1 180.0 179.9
CZ NH1 N1 O2 170.1 32.6
CZ NH1 N1 O3 355.0 212.6
NH2 CZ NE HNE 356.2 180.0
NE CZ NH2 NH1 180.9 180.0
NH2 CZ NH1 N1 9.5 6.0
NH2 CZ NH1 HNH1 189.5 186.1
N1 NH1 CZ NH2 9.5 6.0
CZ NH1 N1 HNH1 180.0 180.1
O2 N1 NH1 O3 175.1 180.0
HNH1 NH1 CZ NH2 189.5 186.1
CZ NH1 HNH1 N1 180.0 179.9
HNH1 NH1 N1 O2 350.1 212.5
HNH1 NH1 N1 O3 175.0 32.5
O C CA HA 60.9 39.9
CA C O OXT 179.7 180.1
O C OXT HXT 360.0  
OXT C CA HA 240.6 220.0
CA C OXT O 180.3 179.9
O2 N1 NH1 HNH1 350.1 212.5
NH1 N1 O2 O3 184.8 180.0
O3 N1 NH1 HNH1 175.0 32.5
NH1 N1 O3 O2 175.1 180.0