PDB Chemical Component NRG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NRG
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.479 |
1.469 |
N |
H |
1.000 |
1.009 |
N |
H2 |
1.000 |
1.009 |
CA |
CB |
1.558 |
1.530 |
CA |
C |
1.525 |
1.507 |
CA |
HA |
1.100 |
1.090 |
CB |
CG |
1.540 |
1.530 |
CB |
HCB1 |
1.100 |
1.089 |
CB |
HCB2 |
1.100 |
1.090 |
CG |
CD |
1.545 |
1.530 |
CG |
HCG1 |
1.100 |
1.089 |
CG |
HCG2 |
1.100 |
1.090 |
CD |
NE |
1.476 |
1.465 |
CD |
HCD1 |
1.100 |
1.089 |
CD |
HCD2 |
1.100 |
1.091 |
NE |
CZ |
1.316 |
1.375 |
NE |
HNE |
1.000 |
0.970 |
CZ |
NH1 |
1.348 |
1.375 |
CZ |
NH2 |
1.330 |
1.303 |
NH1 |
N1 |
1.450 |
1.401 |
NH1 |
HNH1 |
1.000 |
0.970 |
NH2 |
HNH2 |
1.000 |
0.970 |
C |
O |
1.240 |
1.342 |
C |
OXT |
1.245 |
1.209 |
OXT |
HXT |
0.950 |
|
N1 |
O2 |
1.211 |
1.219 |
N1 |
O3 |
1.234 |
1.218 |
Bond Angles for NRG
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
109.5 |
106.7 |
CA |
N |
H2 |
109.5 |
106.7 |
N |
CA |
CB |
109.1 |
109.5 |
N |
CA |
C |
111.5 |
109.5 |
N |
CA |
HA |
108.5 |
109.5 |
H |
N |
H2 |
109.5 |
106.7 |
CB |
CA |
C |
110.0 |
109.4 |
CB |
CA |
HA |
110.0 |
109.4 |
CA |
CB |
CG |
112.7 |
109.4 |
CA |
CB |
HCB1 |
108.4 |
109.5 |
CA |
CB |
HCB2 |
107.7 |
109.5 |
C |
CA |
HA |
107.7 |
109.5 |
CA |
C |
O |
117.5 |
120.0 |
CA |
C |
OXT |
118.0 |
120.0 |
CG |
CB |
HCB1 |
108.4 |
109.4 |
CG |
CB |
HCB2 |
107.7 |
109.5 |
CB |
CG |
CD |
110.0 |
109.5 |
CB |
CG |
HCG1 |
109.3 |
109.5 |
CB |
CG |
HCG2 |
109.2 |
109.5 |
HCB1 |
CB |
HCB2 |
112.0 |
109.5 |
CD |
CG |
HCG1 |
109.3 |
109.5 |
CD |
CG |
HCG2 |
109.2 |
109.4 |
CG |
CD |
NE |
113.5 |
109.5 |
CG |
CD |
HCD1 |
108.2 |
109.5 |
CG |
CD |
HCD2 |
107.2 |
109.5 |
HCG1 |
CG |
HCG2 |
109.9 |
109.5 |
NE |
CD |
HCD1 |
108.2 |
109.4 |
NE |
CD |
HCD2 |
107.3 |
109.4 |
CD |
NE |
CZ |
125.1 |
120.1 |
CD |
NE |
HNE |
117.5 |
120.0 |
HCD1 |
CD |
HCD2 |
112.6 |
109.4 |
CZ |
NE |
HNE |
117.5 |
120.0 |
NE |
CZ |
NH1 |
119.8 |
120.0 |
NE |
CZ |
NH2 |
118.5 |
120.0 |
NH1 |
CZ |
NH2 |
121.7 |
120.0 |
CZ |
NH1 |
N1 |
126.8 |
120.0 |
CZ |
NH1 |
HNH1 |
116.6 |
120.0 |
CZ |
NH2 |
HNH2 |
110.5 |
120.0 |
N1 |
NH1 |
HNH1 |
116.6 |
120.0 |
NH1 |
N1 |
O2 |
119.0 |
120.0 |
NH1 |
N1 |
O3 |
121.0 |
120.0 |
O |
C |
OXT |
124.5 |
120.0 |
C |
OXT |
HXT |
109.5 |
|
O2 |
N1 |
O3 |
119.8 |
120.0 |
Torsion Angles for NRG
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
240.0 |
246.2 |
CB |
CA |
N |
C |
238.3 |
240.1 |
CB |
CA |
N |
HA |
119.9 |
120.0 |
N |
CA |
CB |
CG |
304.7 |
295.0 |
N |
CA |
CB |
HCB1 |
64.7 |
54.9 |
N |
CA |
CB |
HCB2 |
186.1 |
175.0 |
C |
CA |
N |
HA |
241.6 |
239.9 |
N |
CA |
C |
O |
179.8 |
160.0 |
N |
CA |
C |
OXT |
359.5 |
340.1 |
CA |
N |
H |
H2 |
120.0 |
113.8 |
H |
N |
CA |
CB |
9.7 |
186.2 |
H |
N |
CA |
C |
131.4 |
306.2 |
H |
N |
CA |
HA |
249.8 |
66.2 |
CA |
N |
H2 |
H |
240.0 |
246.2 |
H2 |
N |
CA |
CB |
129.7 |
300.0 |
H2 |
N |
CA |
C |
251.4 |
59.9 |
H2 |
N |
CA |
HA |
9.8 |
180.0 |
CB |
CA |
N |
H |
9.7 |
186.2 |
CB |
CA |
N |
H2 |
129.7 |
300.0 |
N |
CA |
CB |
C |
122.6 |
120.0 |
N |
CA |
CB |
HA |
241.0 |
239.9 |
C |
CA |
CB |
HA |
118.4 |
120.0 |
CB |
CA |
C |
O |
301.0 |
280.0 |
CB |
CA |
C |
OXT |
120.8 |
100.0 |
CG |
CB |
CA |
HCB1 |
240.0 |
240.1 |
CG |
CB |
CA |
HCB2 |
118.6 |
120.0 |
CA |
CB |
CG |
CD |
160.4 |
180.0 |
CA |
CB |
CG |
HCG1 |
280.4 |
300.0 |
CA |
CB |
CG |
HCG2 |
40.7 |
60.0 |
HCB1 |
CB |
CA |
HCB2 |
238.6 |
239.9 |
C |
CA |
N |
H |
131.4 |
306.2 |
C |
CA |
N |
H2 |
251.4 |
59.9 |
N |
CA |
C |
CB |
238.8 |
240.0 |
N |
CA |
C |
HA |
118.9 |
120.1 |
CB |
CA |
C |
HA |
240.1 |
240.1 |
C |
CA |
CB |
CG |
182.1 |
175.0 |
C |
CA |
CB |
HCB1 |
302.1 |
294.9 |
C |
CA |
CB |
HCB2 |
63.5 |
55.0 |
O |
C |
CA |
OXT |
180.3 |
179.9 |
CA |
C |
OXT |
HXT |
180.3 |
|
HA |
CA |
N |
H |
249.8 |
66.2 |
HA |
CA |
N |
H2 |
9.8 |
180.0 |
N |
CA |
HA |
CB |
119.4 |
120.0 |
N |
CA |
HA |
C |
239.2 |
239.9 |
CB |
CA |
HA |
C |
119.8 |
119.9 |
HA |
CA |
CB |
CG |
63.7 |
55.0 |
HA |
CA |
CB |
HCB1 |
183.7 |
175.0 |
HA |
CA |
CB |
HCB2 |
305.1 |
295.1 |
HA |
CA |
C |
O |
60.9 |
39.9 |
HA |
CA |
C |
OXT |
240.6 |
220.0 |
CG |
CB |
CA |
C |
182.1 |
175.0 |
CG |
CB |
CA |
HA |
63.7 |
55.0 |
CA |
CB |
CG |
HCB1 |
120.0 |
120.0 |
CA |
CB |
CG |
HCB2 |
241.4 |
240.0 |
HCB1 |
CB |
CG |
HCB2 |
121.4 |
120.0 |
CD |
CG |
CB |
HCG1 |
240.0 |
240.0 |
CD |
CG |
CB |
HCG2 |
119.8 |
119.9 |
CB |
CG |
CD |
NE |
314.3 |
180.0 |
CB |
CG |
CD |
HCD1 |
74.3 |
300.0 |
CB |
CG |
CD |
HCD2 |
196.0 |
60.0 |
HCG1 |
CG |
CB |
HCG2 |
239.8 |
240.0 |
HCB1 |
CB |
CA |
C |
302.1 |
294.9 |
HCB1 |
CB |
CA |
HA |
183.7 |
175.0 |
CA |
CB |
HCB1 |
CG |
237.3 |
240.1 |
CA |
CB |
HCB1 |
HCB2 |
118.6 |
120.1 |
CG |
CB |
HCB1 |
HCB2 |
241.3 |
240.0 |
HCB1 |
CB |
CG |
CD |
40.5 |
60.0 |
HCB1 |
CB |
CG |
HCG1 |
160.5 |
180.0 |
HCB1 |
CB |
CG |
HCG2 |
280.7 |
300.0 |
HCB2 |
CB |
CA |
C |
63.5 |
55.0 |
HCB2 |
CB |
CA |
HA |
305.1 |
295.1 |
CA |
CB |
HCB2 |
CG |
121.8 |
120.0 |
CA |
CB |
HCB2 |
HCB1 |
240.9 |
239.9 |
CG |
CB |
HCB2 |
HCB1 |
119.1 |
120.0 |
HCB2 |
CB |
CG |
CD |
279.0 |
300.0 |
HCB2 |
CB |
CG |
HCG1 |
39.0 |
60.0 |
HCB2 |
CB |
CG |
HCG2 |
159.3 |
180.0 |
CD |
CG |
CB |
HCB1 |
40.5 |
60.0 |
CD |
CG |
CB |
HCB2 |
279.0 |
300.0 |
CB |
CG |
CD |
HCG1 |
120.0 |
120.0 |
CB |
CG |
CD |
HCG2 |
240.2 |
240.0 |
HCG1 |
CG |
CD |
HCG2 |
120.2 |
120.0 |
NE |
CD |
CG |
HCD1 |
240.0 |
240.0 |
NE |
CD |
CG |
HCD2 |
118.3 |
120.0 |
CG |
CD |
NE |
CZ |
156.6 |
180.0 |
CG |
CD |
NE |
HNE |
336.6 |
0.0 |
HCD1 |
CD |
CG |
HCD2 |
238.3 |
240.0 |
HCG1 |
CG |
CB |
HCB1 |
160.5 |
180.0 |
HCG1 |
CG |
CB |
HCB2 |
39.0 |
60.0 |
CB |
CG |
HCG1 |
CD |
239.6 |
240.0 |
CB |
CG |
HCG1 |
HCG2 |
119.8 |
120.0 |
CD |
CG |
HCG1 |
HCG2 |
240.2 |
240.1 |
HCG1 |
CG |
CD |
NE |
194.3 |
60.0 |
HCG1 |
CG |
CD |
HCD1 |
314.3 |
180.0 |
HCG1 |
CG |
CD |
HCD2 |
76.0 |
300.0 |
HCG2 |
CG |
CB |
HCB1 |
280.7 |
300.0 |
HCG2 |
CG |
CB |
HCB2 |
159.3 |
180.0 |
CB |
CG |
HCG2 |
CD |
120.3 |
120.0 |
CB |
CG |
HCG2 |
HCG1 |
240.1 |
239.9 |
CD |
CG |
HCG2 |
HCG1 |
119.8 |
120.0 |
HCG2 |
CG |
CD |
NE |
74.0 |
300.0 |
HCG2 |
CG |
CD |
HCD1 |
194.1 |
60.0 |
HCG2 |
CG |
CD |
HCD2 |
315.8 |
180.0 |
NE |
CD |
CG |
HCG1 |
194.3 |
60.0 |
NE |
CD |
CG |
HCG2 |
74.0 |
300.0 |
CG |
CD |
NE |
HCD1 |
120.0 |
120.1 |
CG |
CD |
NE |
HCD2 |
241.8 |
240.0 |
HCD1 |
CD |
NE |
HCD2 |
121.7 |
119.9 |
CZ |
NE |
CD |
HNE |
180.0 |
180.0 |
CD |
NE |
CZ |
NH1 |
357.1 |
180.0 |
CD |
NE |
CZ |
NH2 |
176.2 |
0.0 |
HCD1 |
CD |
CG |
HCG1 |
314.3 |
180.0 |
HCD1 |
CD |
CG |
HCG2 |
194.1 |
60.0 |
CG |
CD |
HCD1 |
NE |
236.7 |
239.9 |
CG |
CD |
HCD1 |
HCD2 |
118.3 |
120.0 |
NE |
CD |
HCD1 |
HCD2 |
241.6 |
240.1 |
HCD1 |
CD |
NE |
CZ |
36.6 |
59.9 |
HCD1 |
CD |
NE |
HNE |
216.6 |
240.0 |
HCD2 |
CD |
CG |
HCG1 |
76.0 |
300.0 |
HCD2 |
CD |
CG |
HCG2 |
315.8 |
180.0 |
CG |
CD |
HCD2 |
NE |
122.2 |
120.0 |
CG |
CD |
HCD2 |
HCD1 |
241.1 |
239.9 |
NE |
CD |
HCD2 |
HCD1 |
118.9 |
119.9 |
HCD2 |
CD |
NE |
CZ |
274.9 |
300.0 |
HCD2 |
CD |
NE |
HNE |
94.9 |
120.0 |
CZ |
NE |
CD |
HCD1 |
36.6 |
59.9 |
CZ |
NE |
CD |
HCD2 |
274.9 |
300.0 |
CD |
NE |
CZ |
HNE |
180.0 |
180.0 |
NH1 |
CZ |
NE |
NH2 |
180.9 |
180.0 |
NE |
CZ |
NH1 |
N1 |
188.5 |
186.1 |
NE |
CZ |
NH1 |
HNH1 |
8.5 |
6.1 |
NE |
CZ |
NH2 |
HNH2 |
0.4 |
186.6 |
HNE |
NE |
CD |
HCD1 |
216.6 |
240.0 |
HNE |
NE |
CD |
HCD2 |
94.9 |
120.0 |
CD |
NE |
HNE |
CZ |
180.0 |
180.0 |
HNE |
NE |
CZ |
NH1 |
177.1 |
360.0 |
HNE |
NE |
CZ |
NH2 |
356.2 |
180.0 |
NH1 |
CZ |
NE |
HNE |
177.1 |
360.0 |
NE |
CZ |
NH1 |
NH2 |
179.0 |
180.0 |
NH1 |
CZ |
NH2 |
HNH2 |
179.5 |
6.6 |
N1 |
NH1 |
CZ |
HNH1 |
180.0 |
179.9 |
CZ |
NH1 |
N1 |
O2 |
170.1 |
32.6 |
CZ |
NH1 |
N1 |
O3 |
355.0 |
212.6 |
NH2 |
CZ |
NE |
HNE |
356.2 |
180.0 |
NE |
CZ |
NH2 |
NH1 |
180.9 |
180.0 |
NH2 |
CZ |
NH1 |
N1 |
9.5 |
6.0 |
NH2 |
CZ |
NH1 |
HNH1 |
189.5 |
186.1 |
N1 |
NH1 |
CZ |
NH2 |
9.5 |
6.0 |
CZ |
NH1 |
N1 |
HNH1 |
180.0 |
180.1 |
O2 |
N1 |
NH1 |
O3 |
175.1 |
180.0 |
HNH1 |
NH1 |
CZ |
NH2 |
189.5 |
186.1 |
CZ |
NH1 |
HNH1 |
N1 |
180.0 |
179.9 |
HNH1 |
NH1 |
N1 |
O2 |
350.1 |
212.5 |
HNH1 |
NH1 |
N1 |
O3 |
175.0 |
32.5 |
O |
C |
CA |
HA |
60.9 |
39.9 |
CA |
C |
O |
OXT |
179.7 |
180.1 |
O |
C |
OXT |
HXT |
360.0 |
|
OXT |
C |
CA |
HA |
240.6 |
220.0 |
CA |
C |
OXT |
O |
180.3 |
179.9 |
O2 |
N1 |
NH1 |
HNH1 |
350.1 |
212.5 |
NH1 |
N1 |
O2 |
O3 |
184.8 |
180.0 |
O3 |
N1 |
NH1 |
HNH1 |
175.0 |
32.5 |
NH1 |
N1 |
O3 |
O2 |
175.1 |
180.0 |