Atom Nomenclature for NR3

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for NR3

Atom Name (V3) Atom Name (V2)
OAA OAA
OAB OAB
OAC OAC
OAD OAD
OAE OAE
OAF OAF
OAG OAG
OAH OAH
OAI OAI
OAJ OAJ
OAK OAK
CAL CAL
CAM CAM
CAN CAN
CAO CAO
OAP OAP
CAQ CAQ
CAR CAR
CAS CAS
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
SAY SAY
SAZ SAZ
HOAA HOAA
HOAB HOAB
HOAC HOAC
HOAD HOAD
HOAE HOAE
HOAF HOAF
HOAG HOAG
HOAH HOAH
HAL HAL
HALA HALA
HAM HAM
HAMA HAMA
HAN HAN
HANA HANA
HAO HAO
HAOA HAOA
HAQ HAQ
HAR HAR
HAS HAS
HAT HAT
HAU HAU
HAV HAV
HAW HAW
HAX HAX