PDB Chemical Component NQJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NQJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.420 |
1.452 |
| O5 |
S2 |
1.443 |
1.421 |
| O2 |
C2 |
1.221 |
1.209 |
| O4 |
S2 |
1.425 |
1.421 |
| S2 |
C16 |
1.660 |
1.762 |
| S2 |
N2 |
1.731 |
1.656 |
| O1 |
C2 |
1.435 |
1.343 |
| S1 |
C16 |
1.684 |
1.706 |
| S1 |
C12 |
1.669 |
1.759 |
| C2 |
C3 |
1.492 |
1.507 |
| C16 |
C14 |
1.381 |
1.338 |
| O3 |
C11 |
1.223 |
1.217 |
| C12 |
C11 |
1.502 |
1.466 |
| C12 |
C13 |
1.395 |
1.366 |
| C11 |
N1 |
1.332 |
1.347 |
| C14 |
C13 |
1.398 |
1.375 |
| C14 |
C15 |
1.515 |
1.508 |
| N1 |
C3 |
1.450 |
1.465 |
| N2 |
C17 |
1.464 |
1.398 |
| C3 |
C4 |
1.445 |
1.529 |
| F1 |
C23 |
1.316 |
1.399 |
| C10 |
C9 |
1.395 |
1.382 |
| C10 |
C5 |
1.397 |
1.383 |
| C4 |
C5 |
1.495 |
1.507 |
| C18 |
C17 |
1.400 |
1.388 |
| C18 |
C19 |
1.396 |
1.382 |
| C9 |
C8 |
1.392 |
1.382 |
| C17 |
C22 |
1.373 |
1.391 |
| C5 |
C6 |
1.396 |
1.383 |
| C23 |
C19 |
1.483 |
1.507 |
| C23 |
F3 |
1.313 |
1.400 |
| C23 |
F2 |
1.317 |
1.399 |
| C8 |
C7 |
1.395 |
1.382 |
| C19 |
C20 |
1.395 |
1.383 |
| C6 |
C7 |
1.393 |
1.383 |
| C22 |
CL |
1.693 |
1.736 |
| C22 |
C21 |
1.393 |
1.381 |
| C20 |
C21 |
1.390 |
1.383 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.090 |
| C3 |
H4 |
1.100 |
1.090 |
| C6 |
H5 |
1.080 |
1.079 |
| C7 |
H6 |
1.080 |
1.080 |
| C8 |
H7 |
1.080 |
1.080 |
| C9 |
H8 |
1.080 |
1.080 |
| C10 |
H9 |
1.080 |
1.080 |
| C18 |
H10 |
1.080 |
1.079 |
| C20 |
H11 |
1.080 |
1.080 |
| C21 |
H12 |
1.080 |
1.080 |
| N2 |
H13 |
1.000 |
0.970 |
| C15 |
H14 |
1.100 |
1.089 |
| C15 |
H15 |
1.100 |
1.090 |
| C15 |
H16 |
1.100 |
1.090 |
| C13 |
H17 |
1.080 |
1.080 |
| N1 |
H18 |
1.000 |
0.970 |
| C4 |
H19 |
1.100 |
1.091 |
| C4 |
H20 |
1.100 |
1.089 |
Bond Angles for NQJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
O1 |
C2 |
121.5 |
117.0 |
| O1 |
C1 |
H1 |
109.5 |
109.4 |
| O1 |
C1 |
H2 |
109.5 |
109.5 |
| O1 |
C1 |
H3 |
109.5 |
109.5 |
| S2 |
N2 |
H13 |
106.7 |
120.0 |
| C2 |
C3 |
C4 |
110.1 |
109.5 |
| C2 |
C3 |
H4 |
108.0 |
109.5 |
| C16 |
C14 |
C13 |
112.6 |
115.2 |
| C16 |
C14 |
C15 |
132.5 |
122.4 |
| O3 |
C11 |
N1 |
121.2 |
120.0 |
| C12 |
C11 |
N1 |
118.4 |
120.0 |
| C12 |
C13 |
H17 |
123.3 |
123.4 |
| C11 |
N1 |
H18 |
118.0 |
120.1 |
| C15 |
C14 |
C13 |
114.9 |
122.4 |
| C14 |
C13 |
H17 |
123.4 |
123.4 |
| C14 |
C15 |
H14 |
109.5 |
109.5 |
| C14 |
C15 |
H15 |
109.5 |
109.5 |
| C14 |
C15 |
H16 |
109.5 |
109.5 |
| N1 |
C3 |
C4 |
110.6 |
109.5 |
| N1 |
C3 |
H4 |
108.6 |
109.5 |
| C3 |
C4 |
C5 |
114.1 |
109.5 |
| C4 |
C3 |
H4 |
108.7 |
109.5 |
| C3 |
C4 |
H19 |
108.3 |
109.5 |
| C3 |
C4 |
H20 |
108.3 |
109.5 |
| F1 |
C23 |
F2 |
107.7 |
109.5 |
| C10 |
C9 |
H8 |
120.0 |
120.0 |
| C18 |
C17 |
C22 |
119.8 |
119.9 |
| C18 |
C19 |
C20 |
119.3 |
120.1 |
| C19 |
C18 |
H10 |
119.9 |
120.0 |
| C9 |
C8 |
H7 |
120.3 |
120.0 |
| C17 |
C22 |
CL |
120.4 |
120.1 |
| C17 |
C22 |
C21 |
120.5 |
119.9 |
| C5 |
C6 |
C7 |
120.1 |
120.0 |
| C5 |
C6 |
H5 |
120.0 |
120.0 |
| C8 |
C7 |
H6 |
119.7 |
120.0 |
| C19 |
C20 |
C21 |
120.1 |
120.1 |
| C19 |
C20 |
H11 |
120.0 |
119.9 |
| C7 |
C6 |
H5 |
119.9 |
120.0 |
| C6 |
C7 |
H6 |
119.7 |
120.0 |
| C22 |
C21 |
H12 |
120.0 |
119.9 |
| C21 |
C20 |
H11 |
119.9 |
120.0 |
| C20 |
C21 |
H12 |
120.0 |
120.0 |
| H1 |
C1 |
H2 |
109.4 |
109.5 |
| H1 |
C1 |
H3 |
109.5 |
109.5 |
| H2 |
C1 |
H3 |
109.5 |
109.5 |
| H14 |
C15 |
H15 |
109.5 |
109.5 |
| H14 |
C15 |
H16 |
109.4 |
109.4 |
| H15 |
C15 |
H16 |
109.5 |
109.4 |
| H19 |
C4 |
H20 |
109.4 |
109.4 |
Torsion Angles for NQJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
O1 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
O1 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
O1 |
H3 |
240.0 |
240.0 |
| O5 |
S2 |
N2 |
H13 |
302.2 |
353.8 |
| C1 |
O1 |
C2 |
O2 |
343.2 |
0.0 |
| O2 |
C2 |
C3 |
C4 |
281.2 |
240.0 |
| O2 |
C2 |
C3 |
H4 |
162.7 |
120.0 |
| O4 |
S2 |
N2 |
H13 |
176.9 |
126.8 |
| S2 |
C16 |
C14 |
C13 |
180.3 |
180.0 |
| S2 |
C16 |
C14 |
C15 |
0.1 |
0.2 |
| C2 |
O1 |
C1 |
H1 |
180.0 |
180.0 |
| C2 |
O1 |
C1 |
H2 |
300.0 |
300.0 |
| C2 |
O1 |
C1 |
H3 |
60.0 |
60.0 |
| O1 |
C2 |
C3 |
C4 |
102.4 |
60.0 |
| O1 |
C2 |
C3 |
H4 |
343.8 |
300.0 |
| S1 |
C12 |
C11 |
N1 |
180.7 |
360.0 |
| S1 |
C12 |
C13 |
H17 |
179.0 |
179.7 |
| C1 |
O1 |
C2 |
C3 |
162.1 |
180.0 |
| N1 |
C3 |
C2 |
C4 |
122.6 |
120.0 |
| N1 |
C3 |
C2 |
H4 |
241.2 |
240.0 |
| C2 |
C3 |
C4 |
C5 |
295.3 |
185.0 |
| C4 |
C3 |
C2 |
H4 |
118.6 |
120.0 |
| C2 |
C3 |
C4 |
H19 |
56.0 |
305.0 |
| C2 |
C3 |
C4 |
H20 |
174.6 |
65.0 |
| C15 |
C14 |
C16 |
C13 |
179.8 |
180.2 |
| C16 |
C14 |
C13 |
H17 |
180.4 |
180.2 |
| C16 |
C14 |
C15 |
H14 |
90.1 |
276.5 |
| C16 |
C14 |
C15 |
H15 |
210.2 |
36.6 |
| C16 |
C14 |
C15 |
H16 |
330.2 |
156.5 |
| C12 |
C11 |
O3 |
N1 |
181.5 |
180.0 |
| O3 |
C11 |
N1 |
H18 |
177.5 |
180.0 |
| O3 |
C11 |
C12 |
N1 |
178.5 |
180.0 |
| C12 |
C11 |
N1 |
H18 |
356.0 |
0.0 |
| C13 |
C12 |
C11 |
N1 |
359.0 |
179.6 |
| C14 |
C13 |
C12 |
H17 |
180.0 |
179.9 |
| C11 |
N1 |
C3 |
C4 |
188.3 |
205.0 |
| C11 |
N1 |
C3 |
H4 |
307.4 |
325.0 |
| C16 |
C14 |
C13 |
C15 |
179.8 |
180.2 |
| C12 |
C13 |
C14 |
H17 |
180.0 |
180.1 |
| C13 |
C14 |
C15 |
H14 |
269.9 |
96.8 |
| C13 |
C14 |
C15 |
H15 |
29.9 |
216.9 |
| C13 |
C14 |
C15 |
H16 |
149.9 |
336.8 |
| C16 |
C14 |
C15 |
C13 |
180.2 |
179.8 |
| C15 |
C14 |
C13 |
H17 |
0.6 |
360.0 |
| H14 |
C15 |
C14 |
H15 |
240.0 |
239.9 |
| H14 |
C15 |
C14 |
H16 |
120.0 |
120.0 |
| H15 |
C15 |
C14 |
H16 |
240.0 |
240.1 |
| C2 |
C3 |
N1 |
C4 |
237.7 |
240.0 |
| C2 |
C3 |
N1 |
H4 |
118.5 |
120.0 |
| N1 |
C3 |
C4 |
C5 |
172.6 |
65.0 |
| C4 |
C3 |
N1 |
H4 |
240.8 |
240.0 |
| N1 |
C3 |
C4 |
H19 |
293.3 |
185.0 |
| N1 |
C3 |
C4 |
H20 |
51.9 |
305.0 |
| C2 |
C3 |
C4 |
H4 |
241.8 |
240.0 |
| N1 |
C3 |
C4 |
H4 |
119.1 |
120.0 |
| H19 |
C4 |
C3 |
H20 |
241.4 |
240.0 |
| C10 |
C9 |
C8 |
H7 |
179.2 |
180.1 |
| C3 |
C4 |
C5 |
C10 |
111.2 |
269.8 |
| C10 |
C5 |
C6 |
H5 |
180.3 |
179.9 |
| C5 |
C4 |
C3 |
H4 |
53.5 |
305.0 |
| C3 |
C4 |
C5 |
H19 |
120.7 |
120.0 |
| C3 |
C4 |
C5 |
H20 |
239.3 |
239.9 |
| C4 |
C5 |
C6 |
H5 |
0.9 |
359.8 |
| C18 |
C17 |
C22 |
CL |
179.6 |
180.0 |
| C18 |
C17 |
C22 |
C21 |
359.1 |
0.0 |
| C19 |
C18 |
C17 |
C22 |
0.6 |
360.0 |
| C18 |
C19 |
C20 |
C21 |
359.7 |
359.9 |
| C18 |
C19 |
C20 |
H11 |
179.7 |
179.9 |
| C9 |
C8 |
C7 |
H6 |
180.3 |
180.0 |
| C17 |
C22 |
C21 |
H12 |
180.6 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
290.6 |
89.9 |
| C7 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H6 |
179.9 |
180.0 |
| C23 |
C19 |
C18 |
H10 |
359.4 |
359.9 |
| C23 |
C19 |
C20 |
H11 |
0.4 |
0.0 |
| C8 |
C7 |
C6 |
H5 |
179.9 |
180.0 |
| C6 |
C7 |
C8 |
H6 |
180.0 |
180.0 |
| C20 |
C19 |
C18 |
H10 |
180.1 |
180.0 |
| C21 |
C20 |
C19 |
H11 |
180.0 |
180.0 |
| C19 |
C20 |
C21 |
H12 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H5 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
H6 |
180.0 |
180.0 |
| C17 |
C22 |
CL |
C21 |
179.5 |
180.0 |
| CL |
C22 |
C21 |
H12 |
0.1 |
0.1 |
| C17 |
C22 |
C21 |
CL |
180.5 |
180.0 |
| C22 |
C21 |
C20 |
H11 |
180.0 |
180.1 |
| C20 |
C21 |
C22 |
H12 |
180.0 |
179.9 |
| C17 |
C22 |
C21 |
C20 |
0.6 |
359.9 |
| C19 |
C20 |
C21 |
H11 |
180.0 |
180.0 |
| C22 |
C21 |
C20 |
H12 |
180.0 |
180.1 |
| H1 |
C1 |
O1 |
C2 |
180.0 |
180.0 |
| O1 |
C1 |
H1 |
H2 |
120.0 |
120.0 |
| O1 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C1 |
H1 |
H3 |
120.0 |
120.1 |
| H2 |
C1 |
O1 |
C2 |
300.0 |
300.0 |
| O1 |
C1 |
H2 |
H1 |
240.0 |
240.1 |
| O1 |
C1 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C1 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C1 |
O1 |
C2 |
60.0 |
60.0 |
| O1 |
C1 |
H3 |
H1 |
120.1 |
120.0 |
| O1 |
C1 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
H3 |
H2 |
119.9 |
120.0 |
| C2 |
C3 |
H4 |
C4 |
119.5 |
120.0 |
| N1 |
C3 |
H4 |
C4 |
239.7 |
240.0 |
| H4 |
C3 |
C4 |
C5 |
53.5 |
305.0 |
| H4 |
C3 |
C4 |
H19 |
174.1 |
65.0 |
| H4 |
C3 |
C4 |
H20 |
292.8 |
185.0 |
| C5 |
C6 |
H5 |
C7 |
180.0 |
180.0 |
| H5 |
C6 |
C7 |
H6 |
359.9 |
0.0 |
| H6 |
C7 |
C6 |
H5 |
359.9 |
0.0 |
| H7 |
C8 |
C7 |
H6 |
0.3 |
360.0 |
| H8 |
C9 |
C8 |
H7 |
359.2 |
360.0 |
| H9 |
C10 |
C9 |
H8 |
1.0 |
0.1 |
| H10 |
C18 |
C17 |
C22 |
180.6 |
180.0 |
| H10 |
C18 |
C19 |
C20 |
180.1 |
180.0 |
| C19 |
C20 |
H11 |
C21 |
180.0 |
180.0 |
| H11 |
C20 |
C21 |
H12 |
0.0 |
359.9 |
| H12 |
C21 |
C20 |
H11 |
0.0 |
359.9 |
| H14 |
C15 |
C14 |
C13 |
269.9 |
96.8 |
| C14 |
C15 |
H14 |
H15 |
120.0 |
120.1 |
| C14 |
C15 |
H14 |
H16 |
240.0 |
240.0 |
| H15 |
C15 |
H14 |
H16 |
120.0 |
119.9 |
| H15 |
C15 |
C14 |
C13 |
29.9 |
216.9 |
| C14 |
C15 |
H15 |
H14 |
240.0 |
239.9 |
| C14 |
C15 |
H15 |
H16 |
120.0 |
119.9 |
| H14 |
C15 |
H15 |
H16 |
240.0 |
240.0 |
| H16 |
C15 |
C14 |
C13 |
149.9 |
336.8 |
| C14 |
C15 |
H16 |
H14 |
120.0 |
120.0 |
| C14 |
C15 |
H16 |
H15 |
240.0 |
240.0 |
| H14 |
C15 |
H16 |
H15 |
120.0 |
120.0 |
| H18 |
N1 |
C3 |
C4 |
8.3 |
25.0 |
| H18 |
N1 |
C3 |
H4 |
127.4 |
145.0 |
| C3 |
C4 |
H19 |
C5 |
235.8 |
240.0 |
| H19 |
C4 |
C3 |
H4 |
174.1 |
65.0 |
| C3 |
C4 |
H19 |
H20 |
117.9 |
120.0 |
| C3 |
C4 |
H20 |
C5 |
124.2 |
120.1 |
| H20 |
C4 |
C3 |
H4 |
292.8 |
185.0 |
| C3 |
C4 |
H20 |
H19 |
242.1 |
240.0 |