PDB Chemical Component NPW

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for NPW

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2 P 1.494 1.480
O3 P 1.539 1.610
P O2A 1.617 1.610
P O1 1.512 1.610
O1 HO1 0.950 0.968
O3 HO3 0.950 0.966
O5E PA 1.588 1.610
OA3 PA 1.608 1.610
PA OA2 1.446 1.480
PA OA1 1.471 1.610
OB1 PB 1.463 1.480
OB2 PB 1.496 1.610
PB OA3 1.597 1.610
PB O5B 1.612 1.610
N9A C1A 1.460 1.465
C1A C2A 1.528 1.549
C1A O4D 1.431 1.444
C1A H1A 1.100 1.090
N1C C1B 1.443 1.466
C2B C1B 1.533 1.544
C1B O4B 1.415 1.444
C1B H1B 1.100 1.090
C6C N1C 1.496 1.469
N1C C2C 1.306 1.367
N1D C6D 1.352 1.328
N1D C2D 1.341 1.321
O2A C2A 1.413 1.430
C2A C3A 1.519 1.548
C2A H2A 1.099 1.090
O2B C2B 1.405 1.429
C2B C3B 1.542 1.545
C2B H2B 1.100 1.090
O2B HO2B 0.950 0.967
C3C C2C 1.302 1.340
C2C H2C 1.080 1.080
C2D N3D 1.344 1.316
C2D H2D 1.080 1.080
C3A C4E 1.517 1.541
C3A O3A 1.443 1.429
C3A H3A 1.099 1.089
O3A HO3A 0.950 0.967
C3B C4B 1.536 1.545
C3B O3B 1.434 1.429
C3B H3B 1.100 1.090
O3B HO3B 0.950 0.966
C4C C3C 1.524 1.503
C3C C7C 1.434 1.415
N3D C4D 1.339 1.329
O4B C4B 1.457 1.445
C5B C4B 1.532 1.530
C4B H4B 1.100 1.090
C4C C5C 1.518 1.531
C4C H4C 1.100 1.090
C4C H4CA 1.100 1.090
C5A C4D 1.422 1.405
C4D N9A 1.314 1.373
O4D C4E 1.408 1.438
C4E C5E 1.530 1.530
C4E H4E 1.100 1.090
C6D C5A 1.434 1.405
C5A N7A 1.381 1.355
O5B C5B 1.429 1.430
C5B H5B 1.100 1.090
C5B H5BA 1.100 1.090
C5C C6C 1.554 1.532
C5C H5C 1.100 1.089
C5C H5CA 1.100 1.089
C5E O5E 1.423 1.429
C5E H5E 1.101 1.090
C5E H5EA 1.100 1.090
O6C C6C 1.425 1.429
C6C H6C 1.100 1.090
O6C HO6C 0.950 0.967
N6D C6D 1.323 1.385
N6D HN6D 1.000 0.970
N6D HN6A 1.000 0.970
N7A C8A 1.388 1.301
N7C C7C 1.325 1.348
C7C O7C 1.258 1.218
N7C HN7C 1.000 0.970
N7C HN7A 1.000 0.970
C8A N9A 1.422 1.363
C8A H8A 1.080 1.080
OA1 HOA1 0.950 0.967
OB2 HOB2 0.950 0.966

Bond Angles for NPW

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2 P O2A 107.0 109.4
O3 P O2A 100.0 109.5
O1 P O2A 105.5 109.5
P O2A C2A 121.8 123.0
P O1 HO1 109.5 114.0
O5E PA OA2 98.9 109.5
O5E PA OA1 112.5 109.5
OA1 PA OA2 121.2 109.4
PA OA1 HOA1 109.5 114.0
O5B PB OA3 106.2 109.4
PB O5B C5B 122.6 123.0
N9A C1A H1A 101.5 110.7
C2A C1A O4D 104.0 103.5
C2A C1A H1A 109.1 110.6
C1A C2A C3A 102.5 102.1
C1A C2A H2A 117.3 110.9
O4D C1A H1A 114.7 110.6
C1A O4D C4E 110.5 107.0
N1C C1B O4B 107.6 110.3
N1C C1B H1B 106.2 110.3
C2B C1B O4B 106.2 104.8
C2B C1B H1B 107.6 110.4
O4B C1B H1B 114.8 110.4
C1B O4B C4B 104.6 105.2
N1C C2C H2C 112.9 119.1
C2D N1D C6D 122.7 121.2
N1D C6D C5A 113.1 118.5
N1D C2D N3D 128.4 122.4
N1D C2D H2D 115.8 118.8
O2A C2A C3A 113.7 110.9
O2A C2A H2A 106.8 110.8
C3A C2A H2A 110.4 110.9
C2A C3A C4E 101.1 104.2
C2A C3A O3A 112.7 110.5
C2A C3A H3A 112.7 110.5
O2B C2B C3B 113.8 110.5
O2B C2B H2B 101.5 110.5
C3B C2B H2B 115.1 110.5
C2B C3B C4B 102.4 104.1
C2B C3B O3B 107.5 110.5
C2B C3B H3B 115.5 110.5
C3C C2C H2C 112.9 119.2
N3D C2D H2D 115.8 118.8
C2D N3D C4D 110.9 120.7
O3A C3A C4E 109.0 110.5
C4E C3A H3A 116.2 110.5
C3A C4E O4D 107.8 107.3
C3A C4E C5E 112.6 109.9
C3A C4E H4E 107.8 109.9
O3A C3A H3A 105.3 110.5
C3A O3A HO3A 109.5 114.0
O3B C3B C4B 110.5 110.5
C4B C3B H3B 112.7 110.5
C3B C4B H4B 107.2 110.4
O3B C3B H3B 108.1 110.5
C3B O3B HO3B 109.5 114.1
C4C C3C C7C 120.4 118.7
C3C C7C O7C 120.2 120.0
N3D C4D N9A 130.4 134.9
O4B C4B H4B 112.5 110.4
C5B C4B H4B 107.6 110.3
C5C C4C H4C 109.5 109.4
C5C C4C H4CA 109.5 109.3
C4C C5C C6C 111.5 108.7
C4C C5C H5C 108.8 109.6
C4C C5C H5CA 108.8 109.7
H4C C4C H4CA 109.4 109.2
C5A C4D N9A 104.0 106.0
C4D N9A C8A 111.0 107.4
O4D C4E C5E 107.1 109.9
O4D C4E H4E 113.2 109.9
C5E C4E H4E 108.5 110.0
C4E C5E O5E 108.2 109.4
C4E C5E H5E 109.9 109.5
C4E C5E H5EA 109.9 109.5
C6D C5A N7A 127.4 134.7
C5A N7A C8A 103.0 109.5
O5B C5B H5B 109.1 109.5
O5B C5B H5BA 109.1 109.5
H5B C5B H5BA 109.8 109.5
C6C C5C H5C 108.8 109.6
C6C C5C H5CA 108.8 109.5
C5C C6C H6C 108.6 109.8
H5C C5C H5CA 110.2 109.8
O5E C5E H5E 109.9 109.5
O5E C5E H5EA 109.9 109.5
H5E C5E H5EA 109.0 109.5
O6C C6C H6C 106.0 109.9
HN6D N6D HN6A 109.4 120.0
N7A C8A N9A 108.7 110.0
N7A C8A H8A 125.6 125.1
N7C C7C O7C 121.1 120.0
HN7C N7C HN7A 120.0 120.0
N9A C8A H8A 125.6 124.9

Torsion Angles for NPW

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O3 P O2 O2A 108.2 120.0
O1 P O2 O2A 241.8 240.0
O2 P O2A C2A 296.8 305.0
O2 P O1 HO1 360.0 179.9
O2 P O3 O2A 247.4 240.0
O1 P O3 O2A 112.1 120.0
O3 P O2A C2A 181.1 184.9
O3 P O1 HO1 132.2 300.0
O2A P O1 HO1 241.0 60.0
P O2A C2A C3A 282.3 232.7
P O2A C2A H2A 44.3 356.4
O2 P O1 O2A 119.0 119.9
O3 P O1 O2A 251.2 240.0
O1 P O2A C2A 62.4 65.0
HO1 O1 P O2A 241.0 60.0
HO3 O3 P O2A 112.7 179.9
OA1 PA O5E OA2 129.1 120.0
O5E PA OA1 HOA1 243.6 60.0
OA3 PA OA1 HOA1 129.8 300.0
O5E PA OA2 OA1 123.1 120.0
OA2 PA OA1 HOA1 360.0 180.0
O5E PA OA1 OA2 243.6 240.0
OA3 PB O5B C5B 47.4 185.0
PB O5B C5B H5B 11.0 60.0
PB O5B C5B H5BA 251.0 300.0
C2A C1A N9A H1A 118.4 123.0
N9A C1A C2A H2A 36.6 37.3
O4D C1A N9A H1A 237.5 237.0
P O2A C2A C1A 170.2 120.0
N9A C1A C2A H1A 245.8 237.0
O4D C1A C2A H1A 122.9 118.5
C2A C1A O4D C4E 340.7 319.9
O2A C2A C1A C3A 119.6 118.2
O2A C2A C1A H2A 240.7 236.4
C3A C2A C1A H2A 121.0 118.2
C1A C2A C3A C4E 323.9 339.1
C1A C2A C3A O3A 80.2 97.8
C1A C2A C3A H3A 199.2 220.4
N9A C1A O4D H1A 114.6 123.0
C2A C1A O4D H1A 240.9 241.5
O4D C1A C2A C3A 34.7 37.0
O4D C1A C2A H2A 273.7 278.8
C3A C4E O4D C1A 355.8 26.5
C1A O4D C4E C5E 117.1 145.9
C1A O4D C4E H4E 236.6 267.1
C2A C1A H1A O4D 116.2 114.1
H1A C1A C2A C3A 271.8 278.5
H1A C1A C2A H2A 150.8 160.3
H1A C1A O4D C4E 99.8 78.4
C2B C1B N1C O4B 242.1 244.5
C2B C1B N1C H1B 118.7 122.3
O4B C1B N1C H1B 236.6 237.8
N1C C1B O4B C4B 199.0 200.5
N1C C1B C2B O4B 118.7 118.9
N1C C1B C2B H1B 242.1 237.7
O4B C1B C2B H1B 123.4 118.9
C2B C1B O4B C4B 322.4 319.5
N1C C1B O4B H1B 117.9 122.2
C2B C1B O4B H1B 241.3 241.1
C1B O4B C4B H4B 255.4 281.7
N1C C1B H1B O4B 241.3 237.8
C2B C1B H1B O4B 117.9 115.4
H1B C1B O4B C4B 81.1 78.3
C6C N1C C1B H1B 186.7 355.5
C6C N1C C2C H2C 175.5 166.3
C2C N1C C1B O4B 246.9 53.6
C2C N1C C1B H1B 10.3 175.8
C3C C2C N1C H2C 180.0 180.0
C6D N1D C2D N3D 0.5 360.0
C6D N1D C2D H2D 180.5 180.0
N1D C6D C5A N7A 179.0 180.0
C2D N1D C6D C5A 358.9 0.0
N3D C2D N1D H2D 180.0 180.0
N1D C2D N3D C4D 1.7 0.0
O2A C2A C1A O4D 154.3 155.2
O2A C2A C1A H1A 31.5 36.7
C1A C2A O2A C3A 248.0 247.3
C1A C2A O2A H2A 126.0 123.6
C3A C2A O2A H2A 238.0 236.3
O2A C2A C3A C4E 209.6 220.9
O2A C2A C3A O3A 325.8 339.6
O2A C2A C3A H3A 84.9 102.2
C3A C2A C1A O4D 34.7 37.0
C3A C2A C1A H1A 271.8 278.5
C1A C2A C3A H2A 234.3 241.8
O2A C2A C3A H2A 120.0 123.6
O3A C3A C2A C4E 116.2 118.7
C4E C3A C2A H3A 124.7 118.7
C2A C3A C4E O4D 25.8 358.0
C2A C3A C4E C5E 267.9 238.5
C2A C3A C4E H4E 148.3 117.4
O3A C3A C2A H3A 241.0 237.4
C2A C3A O3A HO3A 180.0 180.0
H2A C2A C1A O4D 273.7 278.8
H2A C2A C1A H1A 150.8 160.3
C1A C2A H2A C3A 116.8 112.7
O2A C2A H2A C3A 235.9 236.3
H2A C2A C3A C4E 89.6 97.3
H2A C2A C3A O3A 205.8 216.0
H2A C2A C3A H3A 324.9 338.6
O2B C2B C1B O4B 165.8 142.7
O2B C2B C1B H1B 42.4 23.8
C3B C2B O2B H2B 235.8 237.3
O2B C2B C3B C4B 206.5 241.3
O2B C2B C3B O3B 322.9 0.0
O2B C2B C3B H3B 83.6 122.7
C3B C2B C1B O4B 45.6 24.0
C3B C2B C1B H1B 282.2 265.2
O2B C2B C3B H2B 116.5 122.7
O3B C3B C2B C4B 116.4 118.7
C4B C3B C2B H3B 122.9 118.6
C2B C3B C4B H4B 136.2 94.9
O3B C3B C2B H3B 239.3 237.3
C2B C3B O3B HO3B 180.0 61.5
H2B C2B C1B O4B 282.3 265.3
H2B C2B C1B H1B 158.9 146.5
O2B C2B H2B C3B 236.6 237.3
H2B C2B C3B C4B 90.0 118.6
H2B C2B C3B O3B 206.4 237.3
H2B C2B C3B H3B 327.1 0.0
HO2B O2B C2B C3B 290.8 294.7
HO2B O2B C2B H2B 55.0 57.4
N1C C2C C3C H2C 180.0 180.0
N3D C2D N1D C6D 0.5 360.0
N1D C2D N3D H2D 180.0 180.0
C2D N3D C4D N9A 181.2 180.0
H2D C2D N1D C6D 180.5 180.0
N1D C2D H2D N3D 180.0 180.0
H2D C2D N3D C4D 181.6 180.0
C1A O4D C4E C3A 355.8 26.5
C4E C3A C2A H2A 89.6 97.3
C2A C3A C4E O3A 119.0 118.7
C2A C3A C4E H3A 237.7 241.3
O3A C3A C4E H3A 118.7 122.6
C4E C3A O3A HO3A 291.4 294.8
O4D C4E C3A C5E 117.9 119.4
O4D C4E C3A H4E 237.5 240.6
C5E C4E C3A H4E 119.6 121.2
C3A C4E C5E O5E 191.9 185.0
C3A C4E C5E H5E 311.9 305.0
C3A C4E C5E H5EA 71.9 65.0
O3A C3A C2A H2A 205.8 216.0
C2A C3A O3A C4E 248.6 245.2
C2A C3A O3A H3A 123.2 122.6
C4E C3A O3A H3A 234.7 237.4
O3A C3A C4E O4D 266.8 239.3
O3A C3A C4E C5E 148.9 119.9
O3A C3A C4E H4E 29.3 358.7
H3A C3A C2A H2A 324.9 338.6
C2A C3A H3A C4E 116.0 114.8
C2A C3A H3A O3A 236.7 237.4
O3A C3A H3A C4E 239.3 237.4
H3A C3A C4E O4D 148.1 116.7
H3A C3A C4E C5E 30.2 357.2
H3A C3A C4E H4E 270.6 236.1
H3A C3A O3A HO3A 56.8 57.4
HO3A O3A C3A C4E 291.4 294.8
HO3A O3A C3A H3A 56.8 57.4
C1B O4B C4B C3B 13.8 40.5
C4B C3B C2B H2B 90.0 118.6
C2B C3B C4B O3B 114.2 118.7
C2B C3B C4B H3B 235.3 241.3
O3B C3B C4B H3B 121.0 122.7
C4B C3B O3B HO3B 290.9 176.1
O4B C4B C3B H4B 238.3 241.2
C5B C4B C3B H4B 118.6 122.2
O3B C3B C2B H2B 206.4 237.3
C2B C3B O3B C4B 249.0 245.3
C2B C3B O3B H3B 125.2 122.7
C4B C3B O3B H3B 236.2 237.4
O3B C3B C4B H4B 22.0 336.2
H3B C3B C2B H2B 327.1 0.0
C2B C3B H3B C4B 117.2 114.7
C2B C3B H3B O3B 239.7 237.3
O3B C3B H3B C4B 237.6 237.3
H3B C3B C4B H4B 260.9 213.5
H3B C3B O3B HO3B 54.7 298.8
HO3B O3B C3B C4B 290.9 176.1
HO3B O3B C3B H3B 54.7 298.8
C4C C3C C2C H2C 177.5 180.6
C4C C3C C7C O7C 180.8 180.0
C7C C3C C2C H2C 353.5 0.6
N7C C7C C3C O7C 177.3 180.0
C4D N3D C2D H2D 181.6 180.0
C5A C4D N3D N9A 175.6 180.0
N3D C4D N9A C8A 175.9 180.0
C4B O4B C1B H1B 81.1 78.3
O4B C4B C3B H3B 139.2 94.7
C3B C4B O4B H4B 118.4 118.8
C5B C4B O4B H4B 241.4 237.7
PB O5B C5B C4B 131.0 180.0
C5B C4B C3B H3B 19.5 335.8
C3B C4B C5B H4B 241.7 237.8
O4B C4B C5B H4B 121.7 122.3
H4B C4B C3B H3B 260.9 213.5
C5C C4C C3C C7C 161.8 160.2
H4C C4C C5C H4CA 120.0 119.6
C6C C5C C4C H5C 240.0 240.2
C6C C5C C4C H5CA 120.0 119.6
C4C C5C C6C H6C 180.5 179.0
H5C C5C C4C H5CA 240.0 239.4
H4C C4C C3C C7C 281.8 280.4
C5C C4C H4C H4CA 239.9 240.4
H4C C4C C5C C6C 292.1 289.0
H4C C4C C5C H5C 52.1 48.8
H4C C4C C5C H5CA 172.1 169.4
H4CA C4C C3C C7C 41.8 40.0
C5C C4C H4CA H4C 120.0 119.6
H4CA C4C C5C C6C 172.1 169.4
H4CA C4C C5C H5C 292.1 289.2
H4CA C4C C5C H5CA 52.1 49.8
N1D C6D C5A C4D 359.6 360.0
N3D C4D C5A N9A 183.5 180.0
C5A C4D N9A C8A 359.6 360.0
C4D N9A C1A H1A 327.1 322.0
N7A C8A N9A C4D 0.8 0.0
C4D N9A C8A H8A 180.8 180.0
C4E O4D C1A H1A 99.8 78.4
O4D C4E C3A H3A 148.1 116.7
C3A C4E O4D C5E 238.7 240.6
C3A C4E O4D H4E 119.1 119.4
C5E C4E O4D H4E 240.5 238.8
O4D C4E C5E O5E 73.7 67.2
O4D C4E C5E H5E 193.7 187.2
O4D C4E C5E H5EA 313.7 307.2
C5E C4E C3A H3A 30.2 357.2
C3A C4E C5E O4D 118.3 117.8
C3A C4E C5E H4E 240.8 238.9
O4D C4E C5E H4E 122.5 121.1
O5E C5E C4E H5E 240.0 240.0
O5E C5E C4E H5EA 120.0 120.0
H5E C5E C4E H5EA 240.0 240.0
H4E C4E C3A H3A 270.6 236.1
C3A C4E H4E O4D 240.9 242.2
C3A C4E H4E C5E 122.2 121.1
O4D C4E H4E C5E 241.3 238.9
H4E C4E C5E O5E 311.2 306.0
H4E C4E C5E H5E 71.2 66.1
H4E C4E C5E H5EA 191.2 186.1
C6D C5A C4D N9A 179.3 180.0
C6D C5A N7A C8A 181.2 180.0
N7A C5A C4D N9A 359.8 0.0
C5A N7A C8A N9A 359.2 0.0
C5A N7A C8A H8A 179.2 180.0
C5B O5B PB OA3 47.4 185.0
O5B C5B C4B H4B 165.7 307.2
H5B C5B O5B H5BA 120.0 120.0
H5B C5B C4B H4B 285.6 67.2
O5B C5B H5B H5BA 240.4 240.0
H5BA C5B C4B H4B 45.7 187.2
O5B C5B H5BA H5B 119.6 120.0
C6C C5C C4C H4C 292.1 289.0
C6C C5C C4C H4CA 172.1 169.4
C4C C5C C6C H5C 120.0 119.8
C4C C5C C6C H5CA 240.0 240.3
H5C C5C C6C H5CA 120.0 120.5
O6C C6C C5C H6C 242.5 239.1
H5C C5C C4C H4C 52.1 48.8
H5C C5C C4C H4CA 292.1 289.2
C4C C5C H5C C6C 238.4 240.8
C4C C5C H5C H5CA 119.2 120.5
C6C C5C H5C H5CA 240.8 239.7
H5C C5C C6C H6C 60.5 59.2
H5CA C5C C4C H4C 172.1 169.4
H5CA C5C C4C H4CA 52.1 49.8
C4C C5C H5CA C6C 121.7 119.2
C4C C5C H5CA H5C 240.8 239.5
C6C C5C H5CA H5C 119.2 120.3
H5CA C5C C6C H6C 300.5 298.8
C5E O5E PA OA2 194.8 305.0
C5E O5E PA OA1 323.9 65.0
O5E C5E C4E H4E 311.2 306.0
C4E C5E O5E H5E 120.0 120.0
C4E C5E O5E H5EA 240.0 240.0
H5E C5E O5E H5EA 120.0 120.0
H5E C5E C4E H4E 71.2 66.1
C4E C5E H5E O5E 241.0 240.0
C4E C5E H5E H5EA 120.5 120.0
O5E C5E H5E H5EA 239.5 240.0
H5EA C5E C4E H4E 191.2 186.1
C4E C5E H5EA O5E 119.0 119.9
C4E C5E H5EA H5E 239.5 240.0
O5E C5E H5EA H5E 120.5 120.1
O6C C6C C5C H5C 303.1 298.3
O6C C6C C5C H5CA 183.1 177.9
C5C C6C O6C H6C 119.0 120.8
H6C C6C C5C H5C 60.5 59.2
H6C C6C C5C H5CA 300.5 298.8
HO6C O6C C6C H6C 301.4 299.2
N6D C6D C5A N7A 358.5 0.0
C4D N9A C8A N7A 0.8 0.0
N9A C8A N7A H8A 180.0 180.0
C3C C7C N7C O7C 182.7 180.0
HN7C N7C C7C O7C 360.0 180.0
HN7A N7C C7C O7C 180.0 0.0
C8A N9A C1A H1A 149.7 142.0
N7A C8A N9A H8A 180.0 180.0
N7A C8A H8A N9A 180.0 180.0
HOA1 OA1 PA OA2 360.0 180.0