PDB Chemical Component NPQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for NPQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
C |
1.591 |
1.507 |
| O |
C |
1.206 |
1.208 |
| C |
OXT |
1.211 |
1.343 |
| CAN |
N |
1.347 |
1.348 |
| N |
CA |
1.447 |
1.465 |
| N |
HN |
1.000 |
0.969 |
| CB |
CA |
1.442 |
1.529 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.462 |
1.508 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CD1 |
CG |
1.382 |
1.393 |
| CG |
CD2 |
1.407 |
1.361 |
| CAA |
CAN |
1.585 |
1.506 |
| CAA |
HAA |
1.100 |
1.089 |
| CAA |
HAAA |
1.100 |
1.091 |
| CAA |
HAAB |
1.100 |
1.090 |
| OAB |
CAN |
1.235 |
1.214 |
| CAH |
CAE |
1.376 |
1.360 |
| CAE |
CAF |
1.416 |
1.394 |
| CAE |
HAE |
1.080 |
1.080 |
| CAF |
CAI |
1.433 |
1.361 |
| CAF |
HAF |
1.080 |
1.080 |
| CAH |
CAQ |
1.416 |
1.405 |
| CAH |
HAH |
1.080 |
1.080 |
| CAR |
CAI |
1.390 |
1.406 |
| CAI |
HAI |
1.081 |
1.080 |
| CAJ |
CD1 |
1.379 |
1.361 |
| CAJ |
CAQ |
1.340 |
1.405 |
| CAJ |
HAJ |
1.080 |
1.081 |
| CAQ |
CAR |
1.422 |
1.417 |
| CAR |
CD2 |
1.444 |
1.405 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| OXT |
HOXT |
0.950 |
0.967 |
Bond Angles for NPQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
119.0 |
120.0 |
| O |
C |
OXT |
122.0 |
120.0 |
| C |
OXT |
HOXT |
109.5 |
117.0 |
| CAN |
N |
HN |
115.1 |
120.0 |
| CA |
N |
HN |
115.2 |
120.0 |
| N |
CA |
HA |
106.6 |
109.5 |
| CB |
CA |
HA |
106.7 |
109.5 |
| CG |
CB |
HB |
106.5 |
109.4 |
| CG |
CB |
HBA |
106.5 |
109.5 |
| CB |
CG |
CD2 |
135.6 |
119.5 |
| HB |
CB |
HBA |
109.5 |
109.4 |
| CD1 |
CG |
CD2 |
115.0 |
121.0 |
| CG |
CD2 |
CAR |
117.6 |
119.6 |
| CG |
CD2 |
HD2 |
121.2 |
120.2 |
| CAN |
CAA |
HAA |
109.5 |
109.5 |
| CAN |
CAA |
HAAA |
109.5 |
109.5 |
| CAN |
CAA |
HAAB |
109.5 |
109.5 |
| CAA |
CAN |
OAB |
120.1 |
120.0 |
| HAA |
CAA |
HAAA |
109.5 |
109.5 |
| HAA |
CAA |
HAAB |
109.4 |
109.5 |
| HAAA |
CAA |
HAAB |
109.5 |
109.4 |
| CAH |
CAE |
HAE |
121.8 |
119.6 |
| CAF |
CAE |
HAE |
121.7 |
119.5 |
| CAE |
CAF |
CAI |
124.9 |
121.0 |
| CAE |
CAF |
HAF |
117.6 |
119.5 |
| CAI |
CAF |
HAF |
117.5 |
119.5 |
| CAF |
CAI |
HAI |
120.1 |
120.2 |
| CAQ |
CAH |
HAH |
121.3 |
120.2 |
| CAH |
CAQ |
CAJ |
114.9 |
121.3 |
| CAH |
CAQ |
CAR |
128.5 |
119.4 |
| CAR |
CAI |
HAI |
120.1 |
120.2 |
| CAQ |
CAJ |
CD1 |
119.8 |
119.6 |
| CD1 |
CAJ |
HAJ |
120.1 |
120.2 |
| CAJ |
CD1 |
HD1 |
116.4 |
119.4 |
| CAQ |
CAJ |
HAJ |
120.1 |
120.2 |
| CAJ |
CAQ |
CAR |
116.6 |
119.3 |
| CAQ |
CAR |
CD2 |
123.5 |
119.4 |
| CAR |
CD2 |
HD2 |
121.2 |
120.1 |
Torsion Angles for NPQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
185.4 |
179.8 |
| CA |
C |
OXT |
HOXT |
185.6 |
179.7 |
| CA |
C |
O |
OXT |
174.4 |
180.2 |
| O |
C |
OXT |
HOXT |
360.0 |
360.0 |
| CA |
N |
CAN |
HN |
180.0 |
180.1 |
| CAN |
N |
CA |
HA |
164.4 |
34.9 |
| N |
CA |
C |
OXT |
205.2 |
180.0 |
| CAN |
N |
CA |
HN |
180.0 |
179.9 |
| CB |
CA |
N |
HA |
118.3 |
120.1 |
| HN |
N |
CA |
HA |
344.4 |
215.0 |
| CB |
CA |
C |
OXT |
335.3 |
300.0 |
| CB |
CA |
N |
HN |
102.7 |
335.1 |
| N |
CA |
CB |
HA |
241.7 |
240.0 |
| HA |
CA |
C |
OXT |
90.2 |
60.0 |
| HA |
CA |
N |
HN |
344.4 |
215.0 |
| CG |
CB |
CA |
HA |
56.9 |
55.0 |
| HB |
CB |
CG |
HBA |
116.8 |
119.9 |
| CD1 |
CG |
CB |
CD2 |
187.8 |
180.3 |
| CB |
CG |
CD2 |
CAR |
183.6 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
3.5 |
360.0 |
| HB |
CB |
CA |
HA |
178.5 |
174.9 |
| CG |
CB |
HB |
HBA |
245.2 |
240.0 |
| HB |
CB |
CG |
CD2 |
177.8 |
330.0 |
| HBA |
CB |
CA |
HA |
295.3 |
295.0 |
| CG |
CB |
HBA |
HB |
114.8 |
119.9 |
| HBA |
CB |
CG |
CD2 |
61.0 |
210.0 |
| CD1 |
CG |
CB |
HB |
5.6 |
150.3 |
| CD1 |
CG |
CB |
HBA |
248.8 |
30.3 |
| CB |
CG |
CD1 |
CD2 |
174.0 |
179.7 |
| CD1 |
CG |
CD2 |
CAR |
355.5 |
359.8 |
| CD1 |
CG |
CD2 |
HD2 |
175.5 |
179.7 |
| CD2 |
CG |
CB |
HB |
177.8 |
330.0 |
| CD2 |
CG |
CB |
HBA |
61.0 |
210.0 |
| CAQ |
CAR |
CD2 |
CG |
2.9 |
360.0 |
| CAR |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CAA |
CAN |
N |
HN |
5.3 |
359.9 |
| HAA |
CAA |
CAN |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
CAN |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAN |
HAAB |
240.0 |
240.1 |
| CAN |
CAA |
HAA |
HAAA |
120.0 |
120.0 |
| CAN |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAA |
CAA |
CAN |
OAB |
360.0 |
90.0 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
119.9 |
| CAN |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
| CAN |
CAA |
HAAA |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAN |
OAB |
120.0 |
210.0 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
240.0 |
| CAN |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| CAN |
CAA |
HAAB |
HAAA |
240.0 |
240.0 |
| HAAB |
CAA |
CAN |
OAB |
240.0 |
329.9 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
120.0 |
| OAB |
CAN |
N |
HN |
189.1 |
180.0 |
| OAB |
CAN |
CAA |
HAA |
360.0 |
90.0 |
| OAB |
CAN |
CAA |
HAAA |
120.0 |
210.0 |
| OAB |
CAN |
CAA |
HAAB |
240.0 |
329.9 |
| CAF |
CAE |
CAH |
HAE |
180.0 |
179.5 |
| CAH |
CAE |
CAF |
CAI |
359.2 |
0.5 |
| CAH |
CAE |
CAF |
HAF |
179.2 |
180.5 |
| CAH |
CAE |
CAF |
HAE |
180.0 |
180.5 |
| CAI |
CAF |
CAE |
HAF |
180.0 |
180.0 |
| CAE |
CAF |
CAI |
HAI |
180.3 |
179.9 |
| HAE |
CAE |
CAF |
CAI |
179.3 |
180.0 |
| HAE |
CAE |
CAF |
HAF |
359.2 |
360.0 |
| CAI |
CAF |
CAE |
HAE |
179.3 |
180.0 |
| CAE |
CAF |
CAI |
HAF |
180.0 |
180.0 |
| CAR |
CAI |
CAF |
HAI |
180.0 |
179.9 |
| HAF |
CAF |
CAE |
HAE |
359.2 |
360.0 |
| CAE |
CAF |
HAF |
CAI |
180.0 |
180.0 |
| HAF |
CAF |
CAI |
HAI |
0.4 |
359.9 |
| CAQ |
CAH |
CAE |
HAE |
180.9 |
180.0 |
| CAH |
CAQ |
CAJ |
CD1 |
179.9 |
179.9 |
| CAH |
CAQ |
CAJ |
HAJ |
359.9 |
360.0 |
| CAJ |
CAQ |
CAH |
CAR |
179.8 |
179.8 |
| CAH |
CAQ |
CAR |
CD2 |
179.4 |
180.1 |
| HAH |
CAH |
CAE |
HAE |
0.9 |
360.0 |
| HAH |
CAH |
CAQ |
CAJ |
358.9 |
0.1 |
| HAH |
CAH |
CAQ |
CAR |
179.1 |
180.3 |
| CG |
CD2 |
CAR |
CAI |
181.8 |
180.0 |
| CAR |
CAI |
CAF |
HAF |
180.4 |
179.8 |
| CAF |
CAI |
CAR |
HAI |
180.0 |
180.1 |
| CAH |
CAQ |
CAR |
CAI |
0.4 |
0.1 |
| HAI |
CAI |
CAF |
HAF |
0.4 |
359.9 |
| CAJ |
CD1 |
CG |
CD2 |
4.3 |
0.2 |
| CAQ |
CAJ |
CD1 |
HAJ |
180.0 |
180.0 |
| CD1 |
CAJ |
CAQ |
CAR |
359.7 |
359.8 |
| CAJ |
CAQ |
CAH |
HAH |
358.9 |
0.1 |
| CAH |
CAQ |
CAJ |
CAR |
180.2 |
180.2 |
| CD1 |
CAJ |
CAQ |
HAJ |
180.0 |
180.0 |
| CAQ |
CAJ |
CD1 |
HD1 |
178.2 |
180.0 |
| CAJ |
CAQ |
CAR |
CD2 |
359.6 |
0.2 |
| CAQ |
CAJ |
HAJ |
CD1 |
180.0 |
180.0 |
| HAJ |
CAJ |
CD1 |
HD1 |
358.1 |
359.9 |
| HAJ |
CAJ |
CAQ |
CAR |
179.7 |
179.8 |
| CG |
CD2 |
CAR |
CAQ |
2.9 |
360.0 |
| CAR |
CAQ |
CAH |
HAH |
179.1 |
180.3 |
| CAH |
CAQ |
CAR |
CAJ |
179.8 |
179.8 |
| CAQ |
CAR |
CAI |
HAI |
179.9 |
179.8 |
| CAR |
CAQ |
CAJ |
CD1 |
359.7 |
359.8 |
| CAR |
CAQ |
CAJ |
HAJ |
179.7 |
179.8 |
| CAQ |
CAR |
CD2 |
HD2 |
183.0 |
180.1 |
| CG |
CD2 |
CAR |
HD2 |
180.0 |
179.9 |
| CD2 |
CAR |
CAI |
HAI |
0.9 |
359.8 |
| HD1 |
CD1 |
CG |
CD2 |
184.3 |
180.3 |
| HD1 |
CD1 |
CAJ |
HAJ |
358.1 |
359.9 |
| CG |
CD2 |
HD2 |
CAR |
180.0 |
180.1 |